Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0008976

Physical Location & Seq

Genomic Coordinates Forward (+)

9047763 .. 9051381

Gene Structure 3619 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G005640.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 861 bp

ATGAATGCCAGCCGGTTGCAATGGGCATCTTCCTCGCCTGCGCTGAGCACAGGGCTCGAAACGTCGTCGTCTTGTTCGAAGCTGGGTTTTGTGAACTTTCGCGGCGGCGGCGGCGGTTGTGGAGATAGCTTGAAGACGAAGAAGGGTTTGTTTGTGATAAAGGCGATGGATGTGGAGGGTTCGAGAACCGTGAATTTGAATGGGCACGCTGGGGATTCAGATAAAAATGGGAGCTTGTTGTCTTCGATTGGAAATTCGACCAACATTCAGTGGCACCAGTGCTCGGTGAAGAAAGAAGATAGGGAAAATATGCTGAAACAAAAAGGGTGTGTTATATGGATCACTGGGCTTAGTGGATCAGGGAAGAGCACCGTGGCTTGTGCTTTGAGTGGGATCTTGTACCGCAGGGGAAAGCTGGCTTATGTTCTAGATGGGGACAATGTCAGGCATGGCTTGAATCGTGACCTTGGTTTTAAAGCAGAAGACCGTGCAGAGAACATAAGGAGGATTGGGGAGGTGGCGAAGCTGTTTGCCGATGCTGGAGTCATTTGTATTGCTAGCTTGATTTCTCCGTATAGAAGGGATCGTGATGCCTGTCGTGCATTATTGCCTGCTGGAGAGTTTATTGAGGTGTTCATGGACATTCCACTCCATGTTTGTGAGGCCAGAGACCCCAAGGGACTATATAAGCTTGCACGTGCAGGGAAGATCAAAGGTTTCACTGGGATTGATGATCCATATGAGTCGCCACTAAATTGTGAGATAGCATTAAGGCATACAGGAGGAGAATGTGCGTCCCCATGCGAGATGGCCGAAGAAGTGATTTCTTACTTAGAAGAGAAGGGGTTCCTCCAGGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004020 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0042802 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00230 ko00920 ko01100 ko01120 map00230 map00920 map01100 map01120

Pfam Domains

Protein Families

APS_kinase

Protein Analysis

286

Amino Acids

30.8

Weight (kDa)

8.25

Isoelectric Point (pI)

38.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
APS_kinase	PF01583	108 - 257	2.8e-70	Adenylylsulphate kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008976)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G14750
fragaria_vesca	FvH4_2g04460
malus_domestica	MD05G1100600.v1.1 MD10G1105800.v1.1
prunus_persica	Prupe.8G145000_v2.0.a1 Prupe.8G145000_v2.0.a1
pyrus_communis	pycom05g09920 pycom10g09120
rosa_chinensis	RchiOBHm_Chr6g0253831
rosa_laevigata	RLG00000014962
rosa_multiflora	Rmu_co7978700.1_g000001
rosa_roxburghii	Rroxscaffold_7G00211480
rosa_rugosa	Rorug05G0548000 Rorug05G0548100 Rorug07G0194700
rosa_samantha	Rh4AG288600 Rh5AG196500 Rh6AG063600 Rh6BG057100 Rh6CG057100 Rh6DG054300
rosa_wichuraiana	Rw6G005640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	273
AccII	CGCG	1 cut(s)	102
AciI	CCGC	6 cut(s)	102, 105, 108, 111, 114, 403
AclWI	GGATC	5 cut(s)	347, 364, 401, 591, 728
AcoI	YGGCCR	1 cut(s)	810
AcsI	RAATTY	2 cut(s)	193, 253
AcvI	CACGTG	1 cut(s)	698
AfaI	GTAC	1 cut(s)	401
AfiI	CCNNNNNNNGG	1 cut(s)	283
AgsI	TTSAA	3 cut(s)	133, 199, 457
AjnI	CCWGG	1 cut(s)	852
AluBI	AGCT	7 cut(s)	82, 129, 234, 415, 526, 561, 691
AluI	AGCT	7 cut(s)	82, 129, 234, 415, 526, 561, 691
Alw21I	GWGCWC	3 cut(s)	50, 284, 371
Alw26I	GTCTC	1 cut(s)	663
AlwI	GGATC	5 cut(s)	347, 364, 401, 591, 728
AoxI	GGCC	2 cut(s)	663, 810
ApoI	RAATTY	2 cut(s)	193, 253
Asp700I	GAANNNNTTC	1 cut(s)	845
AspLEI	GCGC	1 cut(s)	43
AsuHPI	GGTGA	1 cut(s)	298
AsuII	TTCGAA	1 cut(s)	77
AsuNHI	GCTAGC	1 cut(s)	557
BaeGI	GKGCMC	1 cut(s)	207
BanI	GGYRCC	1 cut(s)	273
BanII	GRGCYC	1 cut(s)	57
BbrPI	CACGTG	1 cut(s)	698
BbsI	GAAGAC	3 cut(s)	140, 234, 489
Bbv12I	GWGCWC	3 cut(s)	50, 284, 371
BccI	CCATC	3 cut(s)	160, 425, 802
BcgI	CGANNNNNNTGC	4 cut(s)	15, 37, 49, 71
BciT130I	CCWGG	1 cut(s)	854
BcoDI	GTCTC	1 cut(s)	663
BfaI	CTAG	2 cut(s)	428, 558
BisI	GCNGC	4 cut(s)	103, 106, 109, 112
BlpI	GCTNAGC	1 cut(s)	44
BlsI	GCNGC	4 cut(s)	104, 107, 110, 113
Bme1390I	CCNGG	1 cut(s)	854
BmiI	GGNNCC	2 cut(s)	275, 848
BmrFI	CCNGG	1 cut(s)	854
BmrI	ACTGGG	2 cut(s)	354, 732
BmsI	GCATC	3 cut(s)	35, 526, 580
BmtI	GCTAGC	1 cut(s)	561
BmuI	ACTGGG	2 cut(s)	354, 732
BpiI	GAAGAC	3 cut(s)	140, 234, 489
BpmI	CTGGAG	3 cut(s)	561, 636, 836
Bpu1102I	GCTNAGC	1 cut(s)	44
Bpu14I	TTCGAA	1 cut(s)	77
BsaAI	YACGTR	1 cut(s)	698
BsaI	GGTCTC	1 cut(s)	663
BsaJI	CCNNGG	3 cut(s)	372, 466, 675
Bsc4I	CCNNNNNNNGG	1 cut(s)	283
Bse118I	RCCGGY	1 cut(s)	12
Bse1I	ACTGG	3 cut(s)	277, 349, 727
Bse3DI	GCAATG	1 cut(s)	26
BseBI	CCWGG	1 cut(s)	854
BseDI	CCNNGG	3 cut(s)	372, 466, 675
BseGI	GGATG	1 cut(s)	175
BseLI	CCNNNNNNNGG	1 cut(s)	283
BseMI	GCAATG	1 cut(s)	26
BseMII	CTCAG	1 cut(s)	35
BseNI	ACTGG	3 cut(s)	277, 349, 727
BseRI	GAGGAG	1 cut(s)	798
BseSI	GKGCMC	1 cut(s)	207
BseYI	CCCAGC	2 cut(s)	82, 209
BsgI	GTGCAG	2 cut(s)	510, 720
Bsh1236I	CGCG	1 cut(s)	102
BshFI	GGCC	2 cut(s)	665, 812
BshNI	GGYRCC	1 cut(s)	273
BsiHKAI	GWGCWC	3 cut(s)	50, 284, 371
BsiSI	CCGG	1 cut(s)	13
BslFI	GGGAC	3 cut(s)	449, 693, 781
BslI	CCNNNNNNNGG	1 cut(s)	283
BsmAI	GTCTC	1 cut(s)	663
BsmFI	GGGAC	3 cut(s)	449, 693, 781
BsmI	GAATGC	1 cut(s)	10
BsnI	GGCC	2 cut(s)	665, 812
Bso31I	GGTCTC	1 cut(s)	663
Bsp119I	TTCGAA	1 cut(s)	77
Bsp1286I	GDGCHC	5 cut(s)	50, 57, 207, 284, 371
Bsp143I	GATC	6 cut(s)	339, 356, 393, 583, 708, 733
Bsp1720I	GCTNAGC	1 cut(s)	44
BspACI	CCGC	6 cut(s)	102, 105, 108, 111, 114, 403
BspANI	GGCC	2 cut(s)	665, 812
BspCNI	CTCAG	1 cut(s)	36
BspFNI	CGCG	1 cut(s)	102
BspLI	GGNNCC	2 cut(s)	275, 848
BspOI	GCTAGC	1 cut(s)	561
BspPI	GGATC	5 cut(s)	347, 364, 401, 591, 728
BspQI	GCTCTTC	1 cut(s)	359
BspT104I	TTCGAA	1 cut(s)	77
BspT107I	GGYRCC	1 cut(s)	273
BspTNI	GGTCTC	1 cut(s)	663
BsrDI	GCAATG	1 cut(s)	26
BsrFI	RCCGGY	1 cut(s)	12
BsrI	ACTGG	3 cut(s)	277, 349, 727
BssAI	RCCGGY	1 cut(s)	12
BssECI	CCNNGG	3 cut(s)	372, 466, 675
BssMI	GATC	6 cut(s)	339, 356, 393, 583, 708, 733
BssT1I	CCWWGG	2 cut(s)	466, 675
Bst2UI	CCWGG	1 cut(s)	854
Bst4CI	ACNGT	3 cut(s)	190, 373, 488
Bst6I	CTCTTC	2 cut(s)	359, 831
BstBAI	YACGTR	1 cut(s)	698
BstBI	TTCGAA	1 cut(s)	77
BstC8I	GCNNGC	7 cut(s)	10, 39, 207, 417, 559, 612, 693
BstDEI	CTNAG	3 cut(s)	44, 350, 832
BstDSI	CCRYGG	1 cut(s)	372
BstF5I	GGATG	1 cut(s)	175
BstFNI	CGCG	1 cut(s)	102
BstHHI	GCGC	1 cut(s)	43
BstKTI	GATC	6 cut(s)	342, 359, 396, 586, 711, 736
BstMAI	GTCTC	1 cut(s)	663
BstMBI	GATC	6 cut(s)	339, 356, 393, 583, 708, 733
BstMWI	GCNNNNNNNGC	3 cut(s)	108, 111, 599
BstNI	CCWGG	1 cut(s)	854
BstSCI	CCNGG	1 cut(s)	852
BstSLI	GKGCMC	1 cut(s)	207
BstUI	CGCG	1 cut(s)	102
BstV2I	GAAGAC	3 cut(s)	140, 234, 489
BstX2I	RGATCY	1 cut(s)	393
BstYI	RGATCY	1 cut(s)	393
BsuRI	GGCC	2 cut(s)	665, 812
BtgI	CCRYGG	1 cut(s)	372
BtgZI	GCGATG	1 cut(s)	179
BtsCI	GGATG	1 cut(s)	175
BtsIMutI	CAGTG	4 cut(s)	275, 284, 342, 720
Cac8I	GCNNGC	7 cut(s)	10, 39, 207, 417, 559, 612, 693
CfoI	GCGC	1 cut(s)	43
Cfr10I	RCCGGY	1 cut(s)	12
CseI	GACGC	1 cut(s)	783
Csp6I	GTAC	1 cut(s)	400
CviAII	CATG	4 cut(s)	449, 637, 653, 801
CviQI	GTAC	1 cut(s)	400
DdeI	CTNAG	3 cut(s)	44, 350, 832
DpnI	GATC	6 cut(s)	341, 358, 395, 585, 710, 735
DpnII	GATC	6 cut(s)	339, 356, 393, 583, 708, 733
DraI	TTTAAA	1 cut(s)	475
EaeI	YGGCCR	1 cut(s)	810
Eam1104I	CTCTTC	2 cut(s)	359, 831
EarI	CTCTTC	2 cut(s)	359, 831
Eco130I	CCWWGG	2 cut(s)	466, 675
Eco24I	GRGCYC	1 cut(s)	57
Eco31I	GGTCTC	1 cut(s)	663
Eco72I	CACGTG	1 cut(s)	698
EcoRII	CCWGG	1 cut(s)	852
EcoT14I	CCWWGG	2 cut(s)	466, 675
EcoT38I	GRGCYC	1 cut(s)	57
ErhI	CCWWGG	2 cut(s)	466, 675
FaeI	CATG	4 cut(s)	452, 640, 656, 804
FaqI	GGGAC	3 cut(s)	449, 693, 781
FatI	CATG	4 cut(s)	448, 636, 652, 800
FauNDI	CATATG	1 cut(s)	739
Fnu4HI	GCNGC	4 cut(s)	103, 106, 109, 112
FokI	GGATG	1 cut(s)	182
FriOI	GRGCYC	1 cut(s)	57
Fsp4HI	GCNGC	4 cut(s)	103, 106, 109, 112
FspBI	CTAG	2 cut(s)	428, 558
GlaI	GCGC	1 cut(s)	42
GluI	GCNGC	4 cut(s)	103, 106, 109, 112
GsaI	CCCAGC	2 cut(s)	86, 213
GsuI	CTGGAG	3 cut(s)	561, 636, 836
HaeIII	GGCC	2 cut(s)	665, 812
HapII	CCGG	1 cut(s)	13
HgaI	GACGC	1 cut(s)	783
HhaI	GCGC	1 cut(s)	43
Hin1II	CATG	4 cut(s)	452, 640, 656, 804
Hin6I	GCGC	1 cut(s)	41
HinP1I	GCGC	1 cut(s)	41
HindIII	AAGCTT	1 cut(s)	689
HinfI	GANTC	4 cut(s)	215, 457, 543, 743
HpaII	CCGG	1 cut(s)	13
HphI	GGTGA	1 cut(s)	298
Hpy166II	GTNNAC	1 cut(s)	94
Hpy188I	TCNGA	1 cut(s)	220
Hpy188III	TCNNGA	4 cut(s)	183, 428, 461, 587
Hpy8I	GTNNAC	1 cut(s)	94
Hpy99I	CGWCG	2 cut(s)	67, 70
HpyAV	CCTTC	3 cut(s)	136, 573, 835
HpyCH4III	ACNGT	3 cut(s)	190, 373, 488
HpyCH4IV	ACGT	2 cut(s)	62, 697
HpyCH4V	TGCA	5 cut(s)	19, 491, 602, 695, 701
HpyF10VI	GCNNNNNNNGC	3 cut(s)	108, 111, 599
HpyF3I	CTNAG	3 cut(s)	44, 350, 832
HpySE526I	ACGT	2 cut(s)	62, 697
Hsp92II	CATG	4 cut(s)	452, 640, 656, 804
HspAI	GCGC	1 cut(s)	41
Kzo9I	GATC	6 cut(s)	339, 356, 393, 583, 708, 733
LguI	GCTCTTC	1 cut(s)	359
LmnI	GCTCC	1 cut(s)	231
LweI	GCATC	3 cut(s)	35, 526, 580
MaeI	CTAG	2 cut(s)	428, 558
MaeII	ACGT	2 cut(s)	62, 697
MaeIII	GTNAC	1 cut(s)	461
MalI	GATC	6 cut(s)	341, 358, 395, 585, 710, 735
MboI	GATC	6 cut(s)	339, 356, 393, 583, 708, 733
MflI	RGATCY	1 cut(s)	393
MhlI	GDGCHC	5 cut(s)	50, 57, 207, 284, 371
MluCI	AATT	3 cut(s)	193, 253, 754
MlyI	GAGTC	2 cut(s)	552, 752
MnlI	CCTC	8 cut(s)	43, 169, 498, 508, 622, 655, 776, 860
MroXI	GAANNNNTTC	1 cut(s)	845
MseI	TTAA	3 cut(s)	474, 770, 859
MslI	CAYNNNNRTG	1 cut(s)	657
MspI	CCGG	1 cut(s)	13
MspR9I	CCNGG	1 cut(s)	854
Mva1269I	GAATGC	1 cut(s)	10
MvaI	CCWGG	1 cut(s)	854
MvnI	CGCG	1 cut(s)	102
MwoI	GCNNNNNNNGC	3 cut(s)	108, 111, 599
NdeI	CATATG	1 cut(s)	739
NdeII	GATC	6 cut(s)	339, 356, 393, 583, 708, 733
NheI	GCTAGC	1 cut(s)	557
NlaIII	CATG	4 cut(s)	452, 640, 656, 804
NlaIV	GGNNCC	2 cut(s)	275, 848
NmuCI	GTSAC	1 cut(s)	461
NspV	TTCGAA	1 cut(s)	77
PciSI	GCTCTTC	1 cut(s)	359
PcsI	WCGNNNNNNNCGW	1 cut(s)	74
PctI	GAATGC	1 cut(s)	10
PdmI	GAANNNNTTC	1 cut(s)	845
PfeI	GAWTC	2 cut(s)	215, 457
PflFI	GACNNNGTC	1 cut(s)	440
PkrI	GCNGC	4 cut(s)	104, 107, 110, 113
PleI	GAGTC	2 cut(s)	551, 751
PmaCI	CACGTG	1 cut(s)	698
PmlI	CACGTG	1 cut(s)	698
PpsI	GAGTC	2 cut(s)	551, 751
Ppu21I	YACGTR	1 cut(s)	698
Psp6I	CCWGG	1 cut(s)	852
PspCI	CACGTG	1 cut(s)	698
PspFI	CCCAGC	2 cut(s)	82, 209
PspGI	CCWGG	1 cut(s)	852
PspN4I	GGNNCC	2 cut(s)	275, 848
PsuI	RGATCY	1 cut(s)	393
PsyI	GACNNNGTC	1 cut(s)	440
RsaI	GTAC	1 cut(s)	401
RsaNI	GTAC	1 cut(s)	400
RseI	CAYNNNNRTG	1 cut(s)	657
SapI	GCTCTTC	1 cut(s)	359
SaqAI	TTAA	3 cut(s)	474, 770, 859
SatI	GCNGC	4 cut(s)	103, 106, 109, 112
Sau3AI	GATC	6 cut(s)	339, 356, 393, 583, 708, 733
SchI	GAGTC	2 cut(s)	552, 752
ScrFI	CCNGG	1 cut(s)	854
SduI	GDGCHC	5 cut(s)	50, 57, 207, 284, 371
SfaNI	GCATC	3 cut(s)	35, 526, 580
SfuI	TTCGAA	1 cut(s)	77
SmiMI	CAYNNNNRTG	1 cut(s)	657
Sse9I	AATT	3 cut(s)	193, 253, 754
SsiI	CCGC	6 cut(s)	102, 105, 108, 111, 114, 403
SspMI	CTAG	2 cut(s)	428, 558
StyD4I	CCNGG	1 cut(s)	852
StyI	CCWWGG	2 cut(s)	466, 675
TaaI	ACNGT	3 cut(s)	190, 373, 488
TaiI	ACGT	2 cut(s)	65, 700
TaqI	TCGA	5 cut(s)	57, 77, 182, 245, 257
TasI	AATT	3 cut(s)	193, 253, 754
TauI	GCSGC	4 cut(s)	105, 108, 111, 114
TfiI	GAWTC	2 cut(s)	215, 457
Tru1I	TTAA	3 cut(s)	474, 770, 859
Tru9I	TTAA	3 cut(s)	474, 770, 859
TscAI	CASTG	4 cut(s)	275, 284, 349, 727
TseFI	GTSAC	1 cut(s)	461
Tsp45I	GTSAC	1 cut(s)	461
TspDTI	ATGAA	2 cut(s)	17, 625
TspGWI	ACGGA	1 cut(s)	561
TspRI	CASTG	4 cut(s)	275, 284, 349, 727
Tth111I	GACNNNGTC	1 cut(s)	440
XapI	RAATTY	2 cut(s)	193, 253
XbaI	TCTAGA	1 cut(s)	427
XmnI	GAANNNNTTC	1 cut(s)	845
XspI	CTAG	2 cut(s)	428, 558

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.