Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co7978700.1

Orthogroup ID

OG0008976

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 415

Gene Structure 415 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co7978700.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 202 bp

atgctgaaacaaaaagggtgtgttatatggatcactgggcttagtggatcagggaagagcactgtggcttgtgctttgagtgggatcttgtaccgcaggggaaagctggcttatgttctagatggggacaatgtcaggcatggcttgaatcgtgaccttggttttaaagcagaagaccgtgcagagaacataaggaggattg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004020 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0042802 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00230 ko00920 ko01100 ko01120 map00230 map00920 map01100 map01120

Pfam Domains

Protein Families

APS_kinase

Protein Analysis

67

Amino Acids

7.36

Weight (kDa)

9.92

Isoelectric Point (pI)

33.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008976)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G14750
fragaria_vesca	FvH4_2g04460
malus_domestica	MD05G1100600.v1.1 MD10G1105800.v1.1
prunus_persica	Prupe.8G145000_v2.0.a1 Prupe.8G145000_v2.0.a1
pyrus_communis	pycom05g09920 pycom10g09120
rosa_chinensis	RchiOBHm_Chr6g0253831
rosa_laevigata	RLG00000014962
rosa_multiflora	Rmu_co7978700.1_g000001
rosa_roxburghii	Rroxscaffold_7G00211480
rosa_rugosa	Rorug05G0548000 Rorug05G0548100 Rorug07G0194700
rosa_samantha	Rh4AG288600 Rh5AG196500 Rh6AG063600 Rh6BG057100 Rh6CG057100 Rh6DG054300
rosa_wichuraiana	Rw6G005640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	94
AclWI	GGATC	3 cut(s)	38, 55, 92
AfaI	GTAC	1 cut(s)	92
AgsI	TTSAA	1 cut(s)	148
AluBI	AGCT	1 cut(s)	106
AluI	AGCT	1 cut(s)	106
Alw21I	GWGCWC	1 cut(s)	62
AlwI	GGATC	3 cut(s)	38, 55, 92
BbsI	GAAGAC	1 cut(s)	180
Bbv12I	GWGCWC	1 cut(s)	62
BccI	CCATC	1 cut(s)	116
BfaI	CTAG	1 cut(s)	119
BmrI	ACTGGG	1 cut(s)	45
BmuI	ACTGGG	1 cut(s)	45
BpiI	GAAGAC	1 cut(s)	180
BsaJI	CCNNGG	1 cut(s)	157
Bse1I	ACTGG	1 cut(s)	40
BseDI	CCNNGG	1 cut(s)	157
BseNI	ACTGG	1 cut(s)	40
BsgI	GTGCAG	1 cut(s)	201
BsiHKAI	GWGCWC	1 cut(s)	62
BslFI	GGGAC	1 cut(s)	140
BsmFI	GGGAC	1 cut(s)	140
Bsp1286I	GDGCHC	1 cut(s)	62
Bsp143I	GATC	3 cut(s)	30, 47, 84
BspACI	CCGC	1 cut(s)	94
BspPI	GGATC	3 cut(s)	38, 55, 92
BspQI	GCTCTTC	1 cut(s)	50
BsrI	ACTGG	1 cut(s)	40
BssECI	CCNNGG	1 cut(s)	157
BssMI	GATC	3 cut(s)	30, 47, 84
BssT1I	CCWWGG	1 cut(s)	157
Bst4CI	ACNGT	2 cut(s)	64, 179
Bst6I	CTCTTC	1 cut(s)	50
BstC8I	GCNNGC	1 cut(s)	108
BstDEI	CTNAG	1 cut(s)	41
BstKTI	GATC	3 cut(s)	33, 50, 87
BstMBI	GATC	3 cut(s)	30, 47, 84
BstV2I	GAAGAC	1 cut(s)	180
BstX2I	RGATCY	1 cut(s)	84
BstYI	RGATCY	1 cut(s)	84
BtsIMutI	CAGTG	2 cut(s)	33, 60
Cac8I	GCNNGC	1 cut(s)	108
Csp6I	GTAC	1 cut(s)	91
CviAII	CATG	1 cut(s)	140
CviJI	RGCY	5 cut(s)	40, 68, 106, 110, 144
CviKI_1	RGCY	5 cut(s)	40, 68, 106, 110, 144
CviQI	GTAC	1 cut(s)	91
DdeI	CTNAG	1 cut(s)	41
DpnI	GATC	3 cut(s)	32, 49, 86
DpnII	GATC	3 cut(s)	30, 47, 84
DraI	TTTAAA	1 cut(s)	166
Eam1104I	CTCTTC	1 cut(s)	50
EarI	CTCTTC	1 cut(s)	50
Eco130I	CCWWGG	1 cut(s)	157
EcoT14I	CCWWGG	1 cut(s)	157
ErhI	CCWWGG	1 cut(s)	157
FaeI	CATG	1 cut(s)	143
FaiI	YATR	5 cut(s)	26, 28, 114, 141, 191
FaqI	GGGAC	1 cut(s)	140
FatI	CATG	1 cut(s)	139
FspBI	CTAG	1 cut(s)	119
Hin1II	CATG	1 cut(s)	143
HinfI	GANTC	1 cut(s)	148
Hpy188III	TCNNGA	2 cut(s)	119, 152
HpyCH4III	ACNGT	2 cut(s)	64, 179
HpyCH4V	TGCA	1 cut(s)	182
HpyF3I	CTNAG	1 cut(s)	41
Hsp92II	CATG	1 cut(s)	143
Kzo9I	GATC	3 cut(s)	30, 47, 84
LguI	GCTCTTC	1 cut(s)	50
LpnPI	CCDG	5 cut(s)	21, 36, 82, 92, 121
MaeI	CTAG	1 cut(s)	119
MaeIII	GTNAC	1 cut(s)	152
MalI	GATC	3 cut(s)	32, 49, 86
MboI	GATC	3 cut(s)	30, 47, 84
MboII	GAAGA	2 cut(s)	67, 185
MflI	RGATCY	1 cut(s)	84
MhlI	GDGCHC	1 cut(s)	62
MnlI	CCTC	1 cut(s)	189
MseI	TTAA	1 cut(s)	165
NdeII	GATC	3 cut(s)	30, 47, 84
NlaIII	CATG	1 cut(s)	143
NmuCI	GTSAC	1 cut(s)	152
PciSI	GCTCTTC	1 cut(s)	50
PfeI	GAWTC	1 cut(s)	148
PflFI	GACNNNGTC	1 cut(s)	131
PsuI	RGATCY	1 cut(s)	84
PsyI	GACNNNGTC	1 cut(s)	131
RsaI	GTAC	1 cut(s)	92
RsaNI	GTAC	1 cut(s)	91
SapI	GCTCTTC	1 cut(s)	50
SaqAI	TTAA	1 cut(s)	165
Sau3AI	GATC	3 cut(s)	30, 47, 84
SduI	GDGCHC	1 cut(s)	62
SetI	ASST	2 cut(s)	108, 159
SsiI	CCGC	1 cut(s)	94
SspMI	CTAG	1 cut(s)	119
StyI	CCWWGG	1 cut(s)	157
TaaI	ACNGT	2 cut(s)	64, 179
TfiI	GAWTC	1 cut(s)	148
Tru1I	TTAA	1 cut(s)	165
Tru9I	TTAA	1 cut(s)	165
TscAI	CASTG	2 cut(s)	40, 67
TseFI	GTSAC	1 cut(s)	152
Tsp45I	GTSAC	1 cut(s)	152
TspRI	CASTG	2 cut(s)	40, 67
Tth111I	GACNNNGTC	1 cut(s)	131
XbaI	TCTAGA	1 cut(s)	118
XspI	CTAG	1 cut(s)	119

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.