Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0008976

Physical Location & Seq

Genomic Coordinates Forward (+)

8956852 .. 8960075

Gene Structure 3224 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ22764

Sequence Viewer

CDS Protein Promoter (2k)

Length: 858 bp

ATGAATGCCAGCAGGTTGCAATGGGCATCTTCCTCGCCTGCGCTGAGCACAGGGCTCGAAACGTCGTCGTCTTGTTCGAAGCTGGGTTTTGTGAACTTTCGCGGCGGCGGCGGTTGTGGAGATAGCTTGAAGACGAAGAAGGGTTTGTTTGTGATAAAGGCGATGGATGTGGAGGGTTCGAGAACCGTGAATTTGAATGGGCACGCTGGGGATTCAGATAAAAATGGGAGCTTGTTGTCTTCGATTGGAAATTCGACCAACATTCAGTGGCACCAGTGCTCGGTGAAGAAAGAAGATAGGGAAAATATGCTGAAACAAAAAGGGTGTGTTATATGGATCACTGGGCTTAGTGGATCAGGGAAGAGCACTGTGGCTTGTGCTTTGAGTGGGATCTTGTACCGCAGGGGAAAGCTGGCTTATGTTCTAGATGGGGACAATGTCAGGCATGGCTTGAATCGTGACCTTGGTTTTAAAGCAGAAGACCGTGCAGAGAACATAAGGAGGATTGGGGAGGTGGCAAAGCTGTTTGCCGATGCTGGAGTCATTTGTATTGCTAGCTTGATTTCTCCGTATAGAAGGGATCGTGATGCCTGTCGTGCATTATTGCCTGCTGGAGAGTTTATTGAGGTGTTCATGGACATTCCACTCCATGTTTGTGAGGCCAGAGACCCCAAGGGACTATATAAGCTTGCACGTGCAGGGAAGATCAAAGGTTTCACTGGGATTGATGATCCATATGAGTCGCCACTAAATTGTGAGATAGCATTAAGGCATACAGGAGGAGAATGTGCGTCCCCATGCGAGATGGCCGAAGAAGTGATTTCTTACTTAGAAGAGAAGGGGTTCCTCCAGGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004020 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0042802 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00230 ko00920 ko01100 ko01120 map00230 map00920 map01100 map01120

Pfam Domains

Protein Families

APS_kinase

Protein Analysis

285

Amino Acids

30.74

Weight (kDa)

8.25

Isoelectric Point (pI)

38.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
APS_kinase	PF01583	107 - 256	2.8e-70	Adenylylsulphate kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008976)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G14750
fragaria_vesca	FvH4_2g04460
malus_domestica	MD05G1100600.v1.1 MD10G1105800.v1.1
prunus_persica	Prupe.8G145000_v2.0.a1 Prupe.8G145000_v2.0.a1
pyrus_communis	pycom05g09920 pycom10g09120
rosa_chinensis	RchiOBHm_Chr6g0253831
rosa_laevigata	RLG00000014962
rosa_multiflora	Rmu_co7978700.1_g000001
rosa_roxburghii	Rroxscaffold_7G00211480
rosa_rugosa	Rorug05G0548000 Rorug05G0548100 Rorug07G0194700
rosa_samantha	Rh4AG288600 Rh5AG196500 Rh6AG063600 Rh6BG057100 Rh6CG057100 Rh6DG054300
rosa_wichuraiana	Rw6G005640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	3
AccB1I	GGYRCC	1 cut(s)	270
AccII	CGCG	1 cut(s)	102
AciI	CCGC	5 cut(s)	102, 105, 108, 111, 400
AclWI	GGATC	5 cut(s)	344, 361, 398, 588, 725
AcoI	YGGCCR	1 cut(s)	807
AcsI	RAATTY	2 cut(s)	190, 250
AcvI	CACGTG	1 cut(s)	695
AfaI	GTAC	1 cut(s)	398
AfiI	CCNNNNNNNGG	1 cut(s)	280
AgsI	TTSAA	3 cut(s)	130, 196, 454
AjnI	CCWGG	1 cut(s)	849
AluBI	AGCT	7 cut(s)	82, 126, 231, 412, 523, 558, 688
AluI	AGCT	7 cut(s)	82, 126, 231, 412, 523, 558, 688
Alw21I	GWGCWC	3 cut(s)	50, 281, 368
Alw26I	GTCTC	1 cut(s)	660
AlwI	GGATC	5 cut(s)	344, 361, 398, 588, 725
AoxI	GGCC	2 cut(s)	660, 807
ApoI	RAATTY	2 cut(s)	190, 250
Asp700I	GAANNNNTTC	1 cut(s)	842
AspLEI	GCGC	1 cut(s)	43
AsuHPI	GGTGA	1 cut(s)	295
AsuII	TTCGAA	1 cut(s)	77
AsuNHI	GCTAGC	1 cut(s)	554
BaeGI	GKGCMC	1 cut(s)	204
BanI	GGYRCC	1 cut(s)	270
BanII	GRGCYC	1 cut(s)	57
BbrPI	CACGTG	1 cut(s)	695
BbsI	GAAGAC	3 cut(s)	137, 231, 486
Bbv12I	GWGCWC	3 cut(s)	50, 281, 368
BccI	CCATC	3 cut(s)	157, 422, 799
BcgI	CGANNNNNNTGC	4 cut(s)	15, 37, 49, 71
BciT130I	CCWGG	1 cut(s)	851
BcoDI	GTCTC	1 cut(s)	660
BfaI	CTAG	2 cut(s)	425, 555
BfuAI	ACCTGC	1 cut(s)	3
BisI	GCNGC	3 cut(s)	103, 106, 109
BlpI	GCTNAGC	1 cut(s)	44
BlsI	GCNGC	3 cut(s)	104, 107, 110
Bme1390I	CCNGG	1 cut(s)	851
BmiI	GGNNCC	2 cut(s)	272, 845
BmrFI	CCNGG	1 cut(s)	851
BmrI	ACTGGG	2 cut(s)	351, 729
BmsI	GCATC	3 cut(s)	35, 523, 577
BmtI	GCTAGC	1 cut(s)	558
BmuI	ACTGGG	2 cut(s)	351, 729
BpiI	GAAGAC	3 cut(s)	137, 231, 486
BpmI	CTGGAG	3 cut(s)	558, 633, 833
Bpu1102I	GCTNAGC	1 cut(s)	44
Bpu14I	TTCGAA	1 cut(s)	77
BsaAI	YACGTR	1 cut(s)	695
BsaI	GGTCTC	1 cut(s)	660
BsaJI	CCNNGG	2 cut(s)	463, 672
Bsc4I	CCNNNNNNNGG	1 cut(s)	280
Bse1I	ACTGG	3 cut(s)	274, 346, 724
Bse3DI	GCAATG	1 cut(s)	26
BseBI	CCWGG	1 cut(s)	851
BseDI	CCNNGG	2 cut(s)	463, 672
BseGI	GGATG	1 cut(s)	172
BseLI	CCNNNNNNNGG	1 cut(s)	280
BseMI	GCAATG	1 cut(s)	26
BseMII	CTCAG	1 cut(s)	35
BseNI	ACTGG	3 cut(s)	274, 346, 724
BseRI	GAGGAG	1 cut(s)	795
BseSI	GKGCMC	1 cut(s)	204
BseYI	CCCAGC	2 cut(s)	82, 206
BsgI	GTGCAG	2 cut(s)	507, 717
Bsh1236I	CGCG	1 cut(s)	102
BshFI	GGCC	2 cut(s)	662, 809
BshNI	GGYRCC	1 cut(s)	270
BsiHKAI	GWGCWC	3 cut(s)	50, 281, 368
BslFI	GGGAC	3 cut(s)	446, 690, 778
BslI	CCNNNNNNNGG	1 cut(s)	280
BsmAI	GTCTC	1 cut(s)	660
BsmFI	GGGAC	3 cut(s)	446, 690, 778
BsmI	GAATGC	1 cut(s)	10
BsnI	GGCC	2 cut(s)	662, 809
Bso31I	GGTCTC	1 cut(s)	660
Bsp119I	TTCGAA	1 cut(s)	77
Bsp1286I	GDGCHC	5 cut(s)	50, 57, 204, 281, 368
Bsp143I	GATC	6 cut(s)	336, 353, 390, 580, 705, 730
Bsp1720I	GCTNAGC	1 cut(s)	44
BspACI	CCGC	5 cut(s)	102, 105, 108, 111, 400
BspANI	GGCC	2 cut(s)	662, 809
BspCNI	CTCAG	1 cut(s)	36
BspFNI	CGCG	1 cut(s)	102
BspLI	GGNNCC	2 cut(s)	272, 845
BspMI	ACCTGC	1 cut(s)	3
BspOI	GCTAGC	1 cut(s)	558
BspPI	GGATC	5 cut(s)	344, 361, 398, 588, 725
BspQI	GCTCTTC	1 cut(s)	356
BspT104I	TTCGAA	1 cut(s)	77
BspT107I	GGYRCC	1 cut(s)	270
BspTNI	GGTCTC	1 cut(s)	660
BsrDI	GCAATG	1 cut(s)	26
BsrI	ACTGG	3 cut(s)	274, 346, 724
BssECI	CCNNGG	2 cut(s)	463, 672
BssMI	GATC	6 cut(s)	336, 353, 390, 580, 705, 730
BssT1I	CCWWGG	2 cut(s)	463, 672
Bst2UI	CCWGG	1 cut(s)	851
Bst4CI	ACNGT	3 cut(s)	187, 370, 485
Bst6I	CTCTTC	2 cut(s)	356, 828
BstBAI	YACGTR	1 cut(s)	695
BstBI	TTCGAA	1 cut(s)	77
BstC8I	GCNNGC	7 cut(s)	10, 39, 204, 414, 556, 609, 690
BstDEI	CTNAG	3 cut(s)	44, 347, 829
BstF5I	GGATG	1 cut(s)	172
BstFNI	CGCG	1 cut(s)	102
BstHHI	GCGC	1 cut(s)	43
BstKTI	GATC	6 cut(s)	339, 356, 393, 583, 708, 733
BstMAI	GTCTC	1 cut(s)	660
BstMBI	GATC	6 cut(s)	336, 353, 390, 580, 705, 730
BstMWI	GCNNNNNNNGC	2 cut(s)	108, 596
BstNI	CCWGG	1 cut(s)	851
BstSCI	CCNGG	1 cut(s)	849
BstSLI	GKGCMC	1 cut(s)	204
BstUI	CGCG	1 cut(s)	102
BstV2I	GAAGAC	3 cut(s)	137, 231, 486
BstX2I	RGATCY	1 cut(s)	390
BstYI	RGATCY	1 cut(s)	390
BsuRI	GGCC	2 cut(s)	662, 809
BtgZI	GCGATG	1 cut(s)	176
BtsCI	GGATG	1 cut(s)	172
BtsIMutI	CAGTG	5 cut(s)	272, 281, 339, 366, 717
BveI	ACCTGC	1 cut(s)	3
Cac8I	GCNNGC	7 cut(s)	10, 39, 204, 414, 556, 609, 690
CfoI	GCGC	1 cut(s)	43
CseI	GACGC	1 cut(s)	780
Csp6I	GTAC	1 cut(s)	397
CviAII	CATG	4 cut(s)	446, 634, 650, 798
CviQI	GTAC	1 cut(s)	397
DdeI	CTNAG	3 cut(s)	44, 347, 829
DpnI	GATC	6 cut(s)	338, 355, 392, 582, 707, 732
DpnII	GATC	6 cut(s)	336, 353, 390, 580, 705, 730
DraI	TTTAAA	1 cut(s)	472
EaeI	YGGCCR	1 cut(s)	807
Eam1104I	CTCTTC	2 cut(s)	356, 828
EarI	CTCTTC	2 cut(s)	356, 828
Eco130I	CCWWGG	2 cut(s)	463, 672
Eco24I	GRGCYC	1 cut(s)	57
Eco31I	GGTCTC	1 cut(s)	660
Eco72I	CACGTG	1 cut(s)	695
EcoRII	CCWGG	1 cut(s)	849
EcoT14I	CCWWGG	2 cut(s)	463, 672
EcoT38I	GRGCYC	1 cut(s)	57
ErhI	CCWWGG	2 cut(s)	463, 672
FaeI	CATG	4 cut(s)	449, 637, 653, 801
FaqI	GGGAC	3 cut(s)	446, 690, 778
FatI	CATG	4 cut(s)	445, 633, 649, 797
FauNDI	CATATG	1 cut(s)	736
Fnu4HI	GCNGC	3 cut(s)	103, 106, 109
FokI	GGATG	1 cut(s)	179
FriOI	GRGCYC	1 cut(s)	57
Fsp4HI	GCNGC	3 cut(s)	103, 106, 109
FspBI	CTAG	2 cut(s)	425, 555
GlaI	GCGC	1 cut(s)	42
GluI	GCNGC	3 cut(s)	103, 106, 109
GsaI	CCCAGC	2 cut(s)	86, 210
GsuI	CTGGAG	3 cut(s)	558, 633, 833
HaeIII	GGCC	2 cut(s)	662, 809
HgaI	GACGC	1 cut(s)	780
HhaI	GCGC	1 cut(s)	43
Hin1II	CATG	4 cut(s)	449, 637, 653, 801
Hin6I	GCGC	1 cut(s)	41
HinP1I	GCGC	1 cut(s)	41
HindIII	AAGCTT	1 cut(s)	686
HinfI	GANTC	4 cut(s)	212, 454, 540, 740
HphI	GGTGA	1 cut(s)	295
Hpy166II	GTNNAC	1 cut(s)	94
Hpy188I	TCNGA	1 cut(s)	217
Hpy188III	TCNNGA	4 cut(s)	180, 425, 458, 584
Hpy8I	GTNNAC	1 cut(s)	94
Hpy99I	CGWCG	2 cut(s)	67, 70
HpyAV	CCTTC	3 cut(s)	133, 570, 832
HpyCH4III	ACNGT	3 cut(s)	187, 370, 485
HpyCH4IV	ACGT	2 cut(s)	62, 694
HpyCH4V	TGCA	5 cut(s)	19, 488, 599, 692, 698
HpyF10VI	GCNNNNNNNGC	2 cut(s)	108, 596
HpyF3I	CTNAG	3 cut(s)	44, 347, 829
HpySE526I	ACGT	2 cut(s)	62, 694
Hsp92II	CATG	4 cut(s)	449, 637, 653, 801
HspAI	GCGC	1 cut(s)	41
Kzo9I	GATC	6 cut(s)	336, 353, 390, 580, 705, 730
LguI	GCTCTTC	1 cut(s)	356
LmnI	GCTCC	1 cut(s)	228
LweI	GCATC	3 cut(s)	35, 523, 577
MaeI	CTAG	2 cut(s)	425, 555
MaeII	ACGT	2 cut(s)	62, 694
MaeIII	GTNAC	1 cut(s)	458
MalI	GATC	6 cut(s)	338, 355, 392, 582, 707, 732
MboI	GATC	6 cut(s)	336, 353, 390, 580, 705, 730
MflI	RGATCY	1 cut(s)	390
MhlI	GDGCHC	5 cut(s)	50, 57, 204, 281, 368
MluCI	AATT	3 cut(s)	190, 250, 751
MlyI	GAGTC	2 cut(s)	549, 749
MnlI	CCTC	8 cut(s)	43, 166, 495, 505, 619, 652, 773, 857
MroXI	GAANNNNTTC	1 cut(s)	842
MseI	TTAA	3 cut(s)	471, 767, 856
MslI	CAYNNNNRTG	1 cut(s)	654
MspR9I	CCNGG	1 cut(s)	851
Mva1269I	GAATGC	1 cut(s)	10
MvaI	CCWGG	1 cut(s)	851
MvnI	CGCG	1 cut(s)	102
MwoI	GCNNNNNNNGC	2 cut(s)	108, 596
NdeI	CATATG	1 cut(s)	736
NdeII	GATC	6 cut(s)	336, 353, 390, 580, 705, 730
NheI	GCTAGC	1 cut(s)	554
NlaIII	CATG	4 cut(s)	449, 637, 653, 801
NlaIV	GGNNCC	2 cut(s)	272, 845
NmuCI	GTSAC	1 cut(s)	458
NspV	TTCGAA	1 cut(s)	77
PciSI	GCTCTTC	1 cut(s)	356
PcsI	WCGNNNNNNNCGW	1 cut(s)	74
PctI	GAATGC	1 cut(s)	10
PdmI	GAANNNNTTC	1 cut(s)	842
PfeI	GAWTC	2 cut(s)	212, 454
PflFI	GACNNNGTC	1 cut(s)	437
PkrI	GCNGC	3 cut(s)	104, 107, 110
PleI	GAGTC	2 cut(s)	548, 748
PmaCI	CACGTG	1 cut(s)	695
PmlI	CACGTG	1 cut(s)	695
PpsI	GAGTC	2 cut(s)	548, 748
Ppu21I	YACGTR	1 cut(s)	695
Psp6I	CCWGG	1 cut(s)	849
PspCI	CACGTG	1 cut(s)	695
PspFI	CCCAGC	2 cut(s)	82, 206
PspGI	CCWGG	1 cut(s)	849
PspN4I	GGNNCC	2 cut(s)	272, 845
PsuI	RGATCY	1 cut(s)	390
PsyI	GACNNNGTC	1 cut(s)	437
RsaI	GTAC	1 cut(s)	398
RsaNI	GTAC	1 cut(s)	397
RseI	CAYNNNNRTG	1 cut(s)	654
SapI	GCTCTTC	1 cut(s)	356
SaqAI	TTAA	3 cut(s)	471, 767, 856
SatI	GCNGC	3 cut(s)	103, 106, 109
Sau3AI	GATC	6 cut(s)	336, 353, 390, 580, 705, 730
SchI	GAGTC	2 cut(s)	549, 749
ScrFI	CCNGG	1 cut(s)	851
SduI	GDGCHC	5 cut(s)	50, 57, 204, 281, 368
SfaNI	GCATC	3 cut(s)	35, 523, 577
SfuI	TTCGAA	1 cut(s)	77
SmiMI	CAYNNNNRTG	1 cut(s)	654
Sse9I	AATT	3 cut(s)	190, 250, 751
SsiI	CCGC	5 cut(s)	102, 105, 108, 111, 400
SspMI	CTAG	2 cut(s)	425, 555
StyD4I	CCNGG	1 cut(s)	849
StyI	CCWWGG	2 cut(s)	463, 672
TaaI	ACNGT	3 cut(s)	187, 370, 485
TaiI	ACGT	2 cut(s)	65, 697
TaqI	TCGA	5 cut(s)	57, 77, 179, 242, 254
TasI	AATT	3 cut(s)	190, 250, 751
TauI	GCSGC	3 cut(s)	105, 108, 111
TfiI	GAWTC	2 cut(s)	212, 454
Tru1I	TTAA	3 cut(s)	471, 767, 856
Tru9I	TTAA	3 cut(s)	471, 767, 856
TscAI	CASTG	5 cut(s)	272, 281, 346, 373, 724
TseFI	GTSAC	1 cut(s)	458
Tsp45I	GTSAC	1 cut(s)	458
TspDTI	ATGAA	2 cut(s)	17, 622
TspGWI	ACGGA	1 cut(s)	558
TspRI	CASTG	5 cut(s)	272, 281, 346, 373, 724
Tth111I	GACNNNGTC	1 cut(s)	437
XapI	RAATTY	2 cut(s)	190, 250
XbaI	TCTAGA	1 cut(s)	424
XmnI	GAANNNNTTC	1 cut(s)	842
XspI	CTAG	2 cut(s)	425, 555

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.