Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0006910

Physical Location & Seq

Genomic Coordinates Reverse (-)

4271361 .. 4274835

Gene Structure 3475 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g05190.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1326 bp

ATGTCTAGTATTCATGTTCCCCTTAATGCCGATACTAGCACAGGCACTTGTGCTACTCCGACTAGTCCTTGTGTTCCCACTGCTACTCATGCAAGGCTGACCTTTGCTGATAATCCTGCAACTGCCAATGCAGATGGGACAAGTGATGCTTCCCATCAAGATGGTGATGCCATTGGAACTGGTTCTTCTAGTATCACTATTCCAAATACAATAGATACCAGTGCAGATGAGATTCTTGAGGGAAGTGTTGGTACTGTTCCAGCTTATTCTGGTAGTAATGCAGATGAGACTCTTCAGGCTAGTGAAACTAGTGGAACTGGTAGTTCTACTAGCACTCTTCCAGCTTATCCTGATACTAATGCAGATGGGACACTTCAGGCTAGTGAAACTAATGGAACTGGTATTACCAATAGCACTGTTCCAGCTAATGATGATACTAATGGAGATGGGACTTTCCAGGGAAGTGAAGCTATTGCAACTGCCACTCATGCTACTCCCACTATTACATCTGCTGAACCTGCTGCTACTTATCCAAGGATGTACCAGCAGTTTCTTGATGATACTACTAGTACTGTTCGAGCTGATACTACTAGTACTGTTCGAGCGGATACTACTTCTGCAGACACATCTGGTACAGCTGCTAGTGGTAGTAGGGCCTCTTTTCCTCGTGTGACACGCTCTTGGAGGACAGTTGCGCTGGTTGCTCTGTTGGCGTTGCTTTTCTTCTCTTCAGATCACGGAGGTTTAGATACTGTCGTTGACGAGGGGATAGCTTCAGCAGGAGTTGACTATGCTGTTGCATACGCGCGTCAGCAAGCCAGGGGTTATCTACATTTCATTGTAGACCCCATTCTCTCGTGGCTTCCTCTGCGGTTTGTCAGACAGTTGCCTACTGGCTTCCTTCCTCCTGGGCAGATTTCTCGTGTCCCTATTCAGGAGATCGCCGCTCTTCCTATTGCTTACATAGCAGAGCAGCCACTTGAGATTATTGCACAGCTACCTTCTGAGTCAGTAGCTCGATTGCCTACTGCACTGATTGCTCAGCTTCCTGTATCTTCTATCCGCCAGCTCCATCTTAGCCCCACCAGATGGCTCGGCGTACGAGCTCACATTTGGCAGAGCTTGTTATCGTCAGTATCACTTTCAGCGGTGTCTTACCTCCCAGCTTGGGTTCCTGCCCCATTTACCACATTGGTATTGAGATTCTCACTTAGTGCTGGTTCGGTATGGTTTTTCAGCTTCATCATTGAGCAGCTTTTGTGTCACATCACTGGGTTGCTGAGGCGATTGCATATACGTTTTCGGCGCCACGACAGGGGGCCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

442

Amino Acids

46.51

Weight (kDa)

5.11

Isoelectric Point (pI)

41.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006910)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g05190 FvH4_2g05191
rosa_chinensis	RchiOBHm_Chr1g0337181 RchiOBHm_Chr2g0121011
rosa_laevigata	RLG00000014847 RLG00000014850 RLG00000023918 RLG00000036182 RLG00000036367
rosa_multiflora	Rmu_sc0000903.1_g000029 Rmu_sc0002973.1_g000006 Rmu_sc0004590.1_g000006 Rmu_sc0004976.1_g000015 Rmu_sc0005657.1_g000072 Rmu_sc0008105.1_g000001 Rmu_sc0009887.1_g000001 Rmu_sc0015317.1_g000001 Rmu_sc0027068.1_g000002 Rmu_sc0030281.1_g000001 Rmu_ssc0000259.1_g000046
rosa_roxburghii	Rroxscaffold_5G00333420 Rroxscaffold_7G00210090 Rroxscaffold_7G00210150
rosa_samantha	Rh3CG243900
rosa_wichuraiana	Rw6G006560 Rw6G006570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	526
AccB1I	GGYRCC	1 cut(s)	1305
AccB7I	CCANNNNNTGG	1 cut(s)	1089
AccBSI	CCGCTC	2 cut(s)	605, 947
AccI	GTMKAC	1 cut(s)	843
AccII	CGCG	2 cut(s)	806, 808
AciI	CCGC	5 cut(s)	605, 871, 945, 1063, 1148
AcuI	CTGAAG	4 cut(s)	278, 359, 714, 759
AcyI	GRCGYC	1 cut(s)	1306
AdeI	CACNNNGTG	1 cut(s)	1214
AfaI	GTAC	6 cut(s)	253, 542, 571, 595, 634, 1101
AfiI	CCNNNNNNNGG	4 cut(s)	934, 1089, 1168, 1315
AhlI	ACTAGT	4 cut(s)	62, 308, 566, 590
AjnI	CCWGG	3 cut(s)	456, 818, 907
Alw21I	GWGCWC	1 cut(s)	1108
Alw26I	GTCTC	1 cut(s)	281
AoxI	GGCC	2 cut(s)	654, 1319
ApeKI	GCWGC	4 cut(s)	521, 638, 973, 1252
Asp700I	GAANNNNTTC	1 cut(s)	181
AspLEI	GCGC	3 cut(s)	697, 808, 1308
AspS9I	GGNCC	2 cut(s)	654, 1319
AsuHPI	GGTGA	1 cut(s)	176
BaeI	ACNNNNGTAYC	2 cut(s)	741, 774
BanI	GGYRCC	1 cut(s)	1305
BanII	GRGCYC	1 cut(s)	1108
BarI	GAAGNNNNNNTAC	2 cut(s)	235, 267
BauI	CACGAG	3 cut(s)	666, 856, 921
Bbv12I	GWGCWC	1 cut(s)	1108
BbvCI	CCTCAGC	1 cut(s)	1280
BbvI	GCAGC	4 cut(s)	508, 625, 985, 1264
BccI	CCATC	7 cut(s)	128, 155, 162, 359, 440, 1080, 1083
BcgI	CGANNNNNNTGC	2 cut(s)	902, 936
BciT130I	CCWGG	3 cut(s)	458, 820, 909
BciVI	GTATCC	1 cut(s)	601
BcoDI	GTCTC	1 cut(s)	281
BcuI	ACTAGT	4 cut(s)	62, 308, 566, 590
BfmI	CTRYAG	1 cut(s)	618
BfoI	RGCGCY	1 cut(s)	1309
BfuAI	ACCTGC	1 cut(s)	526
BfuI	GTATCC	1 cut(s)	601
BisI	GCNGC	5 cut(s)	522, 639, 945, 974, 1253
BlpI	GCTNAGC	1 cut(s)	1041
BlsI	GCNGC	5 cut(s)	523, 640, 946, 975, 1254
BmcAI	AGTACT	2 cut(s)	571, 595
Bme1390I	CCNGG	3 cut(s)	458, 820, 909
BmgT120I	GGNCC	2 cut(s)	654, 1319
BmiI	GGNNCC	3 cut(s)	1173, 1307, 1320
BmrFI	CCNGG	3 cut(s)	458, 820, 909
BmrI	ACTGGG	1 cut(s)	1281
BmsI	GCATC	2 cut(s)	136, 157
BmuI	ACTGGG	1 cut(s)	1281
Bpu10I	CCTNAGC	1 cut(s)	1280
Bpu1102I	GCTNAGC	1 cut(s)	1041
BpuEI	CTTGAG	2 cut(s)	257, 1001
BsaHI	GRCGYC	1 cut(s)	1306
BsaJI	CCNNGG	4 cut(s)	457, 533, 819, 908
Bsc4I	CCNNNNNNNGG	4 cut(s)	934, 1089, 1168, 1315
Bse1I	ACTGG	6 cut(s)	184, 219, 322, 403, 898, 1276
BseBI	CCWGG	3 cut(s)	458, 820, 909
BseDI	CCNNGG	4 cut(s)	457, 533, 819, 908
BseGI	GGATG	1 cut(s)	543
BseLI	CCNNNNNNNGG	4 cut(s)	934, 1089, 1168, 1315
BseMII	CTCAG	3 cut(s)	996, 1055, 1271
BseNI	ACTGG	6 cut(s)	184, 219, 322, 403, 898, 1276
BseXI	GCAGC	4 cut(s)	508, 625, 985, 1264
BseYI	CCCAGC	1 cut(s)	1162
BsgI	GTGCAG	2 cut(s)	243, 1014
Bsh1236I	CGCG	2 cut(s)	806, 808
BshFI	GGCC	2 cut(s)	656, 1321
BshNI	GGYRCC	1 cut(s)	1305
BsiHKAI	GWGCWC	1 cut(s)	1108
BsiWI	CGTACG	1 cut(s)	1099
BslFI	GGGAC	4 cut(s)	151, 382, 463, 911
BslI	CCNNNNNNNGG	4 cut(s)	934, 1089, 1168, 1315
BsmAI	GTCTC	1 cut(s)	281
BsmFI	GGGAC	4 cut(s)	151, 382, 463, 911
BsnI	GGCC	2 cut(s)	656, 1321
Bsp1286I	GDGCHC	1 cut(s)	1108
Bsp143I	GATC	2 cut(s)	733, 939
Bsp1720I	GCTNAGC	1 cut(s)	1041
BspACI	CCGC	5 cut(s)	605, 871, 945, 1063, 1148
BspANI	GGCC	2 cut(s)	656, 1321
BspCNI	CTCAG	3 cut(s)	997, 1054, 1272
BspFNI	CGCG	2 cut(s)	806, 808
BspLI	GGNNCC	3 cut(s)	1173, 1307, 1320
BspMAI	CTGCAG	1 cut(s)	622
BspMI	ACCTGC	1 cut(s)	526
BspQI	GCTCTTC	1 cut(s)	954
BspT107I	GGYRCC	1 cut(s)	1305
BsrBI	CCGCTC	2 cut(s)	605, 947
BsrI	ACTGG	6 cut(s)	184, 219, 322, 403, 898, 1276
BssECI	CCNNGG	4 cut(s)	457, 533, 819, 908
BssMI	GATC	2 cut(s)	733, 939
BssNI	GRCGYC	1 cut(s)	1306
BssSI	CACGAG	3 cut(s)	666, 856, 921
BssT1I	CCWWGG	1 cut(s)	533
Bst2BI	CACGAG	3 cut(s)	666, 856, 921
Bst2UI	CCWGG	3 cut(s)	458, 820, 909
Bst4CI	ACNGT	7 cut(s)	256, 418, 574, 598, 691, 754, 885
Bst6I	CTCTTC	4 cut(s)	297, 342, 733, 954
BstACI	GRCGYC	1 cut(s)	1306
BstAPI	GCANNNNNTGC	1 cut(s)	1037
BstC8I	GCNNGC	2 cut(s)	816, 1067
BstDEI	CTNAG	5 cut(s)	1005, 1041, 1076, 1211, 1280
BstF5I	GGATG	1 cut(s)	543
BstFNI	CGCG	2 cut(s)	806, 808
BstH2I	RGCGCY	1 cut(s)	1309
BstHHI	GCGC	3 cut(s)	697, 808, 1308
BstKTI	GATC	2 cut(s)	736, 942
BstMAI	GTCTC	1 cut(s)	281
BstMBI	GATC	2 cut(s)	733, 939
BstMWI	GCNNNNNNNGC	8 cut(s)	89, 488, 518, 701, 710, 868, 965, 1037
BstNI	CCWGG	3 cut(s)	458, 820, 909
BstSCI	CCNGG	3 cut(s)	456, 818, 907
BstSFI	CTRYAG	1 cut(s)	618
BstUI	CGCG	2 cut(s)	806, 808
BstV1I	GCAGC	4 cut(s)	508, 625, 985, 1264
BstXI	CCANNNNNNTGG	1 cut(s)	161
BsuI	GTATCC	1 cut(s)	601
BsuRI	GGCC	2 cut(s)	656, 1321
BtsCI	GGATG	1 cut(s)	543
BtsI	GCAGTG	1 cut(s)	78
BtsIMutI	CAGTG	5 cut(s)	78, 226, 414, 1031, 1269
BveI	ACCTGC	1 cut(s)	526
Cac8I	GCNNGC	2 cut(s)	816, 1067
CfoI	GCGC	3 cut(s)	697, 808, 1308
Cfr13I	GGNCC	2 cut(s)	654, 1319
CseI	GACGC	1 cut(s)	797
Csp6I	GTAC	6 cut(s)	252, 541, 570, 594, 633, 1100
CviAII	CATG	4 cut(s)	14, 89, 488, 1323
CviQI	GTAC	6 cut(s)	252, 541, 570, 594, 633, 1100
DdeI	CTNAG	5 cut(s)	1005, 1041, 1076, 1211, 1280
DinI	GGCGCC	1 cut(s)	1307
DpnI	GATC	2 cut(s)	735, 941
DpnII	GATC	2 cut(s)	733, 939
DraIII	CACNNNGTG	1 cut(s)	1214
Eam1104I	CTCTTC	4 cut(s)	297, 342, 733, 954
EarI	CTCTTC	4 cut(s)	297, 342, 733, 954
EciI	GGCGGA	1 cut(s)	1052
Ecl136II	GAGCTC	1 cut(s)	1106
Eco130I	CCWWGG	1 cut(s)	533
Eco24I	GRGCYC	1 cut(s)	1108
Eco53kI	GAGCTC	1 cut(s)	1106
Eco57I	CTGAAG	4 cut(s)	278, 359, 714, 759
EcoICRI	GAGCTC	1 cut(s)	1106
EcoO109I	RGGNCCY	1 cut(s)	654
EcoRII	CCWGG	3 cut(s)	456, 818, 907
EcoT14I	CCWWGG	1 cut(s)	533
EcoT38I	GRGCYC	1 cut(s)	1108
EgeI	GGCGCC	1 cut(s)	1307
EheI	GGCGCC	1 cut(s)	1307
ErhI	CCWWGG	1 cut(s)	533
FaeI	CATG	4 cut(s)	17, 92, 491, 1326
FalI	AAGNNNNNCTT	2 cut(s)	133, 165
FaqI	GGGAC	4 cut(s)	151, 382, 463, 911
FatI	CATG	4 cut(s)	13, 88, 487, 1322
FblI	GTMKAC	1 cut(s)	843
Fnu4HI	GCNGC	5 cut(s)	522, 639, 945, 974, 1253
FokI	GGATG	1 cut(s)	550
FriOI	GRGCYC	1 cut(s)	1108
Fsp4HI	GCNGC	5 cut(s)	522, 639, 945, 974, 1253
GlaI	GCGC	3 cut(s)	696, 807, 1307
GluI	GCNGC	5 cut(s)	522, 639, 945, 974, 1253
GsaI	CCCAGC	1 cut(s)	1166
HaeII	RGCGCY	1 cut(s)	1309
HaeIII	GGCC	2 cut(s)	656, 1321
HgaI	GACGC	1 cut(s)	797
HhaI	GCGC	3 cut(s)	697, 808, 1308
Hin1I	GRCGYC	1 cut(s)	1306
Hin1II	CATG	4 cut(s)	17, 92, 491, 1326
Hin6I	GCGC	3 cut(s)	695, 806, 1306
HinP1I	GCGC	3 cut(s)	695, 806, 1306
HincII	GTYRAC	2 cut(s)	760, 787
HindII	GTYRAC	2 cut(s)	760, 787
HinfI	GANTC	4 cut(s)	232, 289, 1007, 1203
HphI	GGTGA	1 cut(s)	176
Hpy166II	GTNNAC	3 cut(s)	760, 787, 844
Hpy188I	TCNGA	4 cut(s)	60, 733, 881, 1006
Hpy188III	TCNNGA	5 cut(s)	158, 236, 350, 554, 935
Hpy8I	GTNNAC	3 cut(s)	760, 787, 844
HpyAV	CCTTC	2 cut(s)	911, 1011
HpyCH4III	ACNGT	7 cut(s)	256, 418, 574, 598, 691, 754, 885
HpyCH4IV	ACGT	1 cut(s)	1297
HpyF10VI	GCNNNNNNNGC	8 cut(s)	89, 488, 518, 701, 710, 868, 965, 1037
HpyF3I	CTNAG	5 cut(s)	1005, 1041, 1076, 1211, 1280
HpySE526I	ACGT	1 cut(s)	1297
Hsp92I	GRCGYC	1 cut(s)	1306
Hsp92II	CATG	4 cut(s)	17, 92, 491, 1326
HspAI	GCGC	3 cut(s)	695, 806, 1306
KasI	GGCGCC	1 cut(s)	1305
Kzo9I	GATC	2 cut(s)	733, 939
LguI	GCTCTTC	1 cut(s)	954
LmnI	GCTCC	1 cut(s)	1074
Lsp1109I	GCAGC	4 cut(s)	508, 625, 985, 1264
LweI	GCATC	2 cut(s)	136, 157
MaeII	ACGT	1 cut(s)	1297
MaeIII	GTNAC	2 cut(s)	670, 1262
MalI	GATC	2 cut(s)	735, 941
MbiI	CCGCTC	2 cut(s)	605, 947
MboI	GATC	2 cut(s)	733, 939
MboII	GAAGA	7 cut(s)	177, 284, 329, 715, 720, 941, 1047
MhlI	GDGCHC	1 cut(s)	1108
Mly113I	GGCGCC	1 cut(s)	1306
MlyI	GAGTC	2 cut(s)	283, 1016
MmeI	TCCRAC	1 cut(s)	83
MroXI	GAANNNNTTC	1 cut(s)	181
MseI	TTAA	1 cut(s)	24
MslI	CAYNNNNRTG	1 cut(s)	159
MspA1I	CMGCKG	2 cut(s)	638, 1148
MspR9I	CCNGG	3 cut(s)	458, 820, 909
MvaI	CCWGG	3 cut(s)	458, 820, 909
MvnI	CGCG	2 cut(s)	806, 808
MwoI	GCNNNNNNNGC	8 cut(s)	89, 488, 518, 701, 710, 868, 965, 1037
NarI	GGCGCC	1 cut(s)	1306
NdeII	GATC	2 cut(s)	733, 939
NlaIII	CATG	4 cut(s)	17, 92, 491, 1326
NlaIV	GGNNCC	3 cut(s)	1173, 1307, 1320
NmeAIII	GCCGAG	1 cut(s)	1074
NmuCI	GTSAC	2 cut(s)	670, 1262
PciSI	GCTCTTC	1 cut(s)	954
PdmI	GAANNNNTTC	1 cut(s)	181
PfeI	GAWTC	2 cut(s)	232, 1203
Pfl23II	CGTACG	1 cut(s)	1099
PflMI	CCANNNNNTGG	1 cut(s)	1089
PkrI	GCNGC	5 cut(s)	523, 640, 946, 975, 1254
PleI	GAGTC	2 cut(s)	283, 1015
PluTI	GGCGCC	1 cut(s)	1309
PpsI	GAGTC	2 cut(s)	283, 1015
Psp124BI	GAGCTC	1 cut(s)	1108
Psp6I	CCWGG	3 cut(s)	456, 818, 907
PspFI	CCCAGC	1 cut(s)	1162
PspGI	CCWGG	3 cut(s)	456, 818, 907
PspLI	CGTACG	1 cut(s)	1099
PspN4I	GGNNCC	3 cut(s)	1173, 1307, 1320
PspPI	GGNCC	2 cut(s)	654, 1319
PsrI	GAACNNNNNNTAC	2 cut(s)	388, 420
PstI	CTGCAG	1 cut(s)	622
PvuII	CAGCTG	1 cut(s)	638
RsaI	GTAC	6 cut(s)	253, 542, 571, 595, 634, 1101
RsaNI	GTAC	6 cut(s)	252, 541, 570, 594, 633, 1100
RseI	CAYNNNNRTG	1 cut(s)	159
SacI	GAGCTC	1 cut(s)	1108
SapI	GCTCTTC	1 cut(s)	954
SaqAI	TTAA	1 cut(s)	24
SatI	GCNGC	5 cut(s)	522, 639, 945, 974, 1253
Sau3AI	GATC	2 cut(s)	733, 939
Sau96I	GGNCC	2 cut(s)	654, 1319
ScaI	AGTACT	2 cut(s)	571, 595
SchI	GAGTC	2 cut(s)	283, 1016
ScrFI	CCNGG	3 cut(s)	458, 820, 909
SduI	GDGCHC	1 cut(s)	1108
SfaNI	GCATC	2 cut(s)	136, 157
SfcI	CTRYAG	1 cut(s)	618
SfoI	GGCGCC	1 cut(s)	1307
SmiMI	CAYNNNNRTG	1 cut(s)	159
SmlI	CTYRAG	2 cut(s)	236, 980
SmoI	CTYRAG	2 cut(s)	236, 980
SpeI	ACTAGT	4 cut(s)	62, 308, 566, 590
SsiI	CCGC	5 cut(s)	605, 871, 945, 1063, 1148
SspDI	GGCGCC	1 cut(s)	1305
SstI	GAGCTC	1 cut(s)	1108
StyD4I	CCNGG	3 cut(s)	456, 818, 907
StyI	CCWWGG	1 cut(s)	533
TaaI	ACNGT	7 cut(s)	256, 418, 574, 598, 691, 754, 885
TaiI	ACGT	1 cut(s)	1300
TaqI	TCGA	3 cut(s)	577, 601, 1018
TatI	WGTACW	2 cut(s)	569, 593
TauI	GCSGC	1 cut(s)	947
TfiI	GAWTC	2 cut(s)	232, 1203
Tru1I	TTAA	1 cut(s)	24
Tru9I	TTAA	1 cut(s)	24
TscAI	CASTG	5 cut(s)	85, 226, 421, 1038, 1276
TseFI	GTSAC	2 cut(s)	670, 1262
TseI	GCWGC	4 cut(s)	521, 638, 973, 1252
Tsp45I	GTSAC	2 cut(s)	670, 1262
TspDTI	ATGAA	2 cut(s)	826, 1231
TspGWI	ACGGA	1 cut(s)	753
TspRI	CASTG	5 cut(s)	85, 226, 421, 1038, 1276
Van91I	CCANNNNNTGG	1 cut(s)	1089
XmiI	GTMKAC	1 cut(s)	843
XmnI	GAANNNNTTC	1 cut(s)	181
ZrmI	AGTACT	2 cut(s)	571, 595

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.