Rroxscaffold_7G00210150

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0006910
Physical Location & Seq
Forward (+)
60414593 .. 60417164
2572 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00210150.1

Sequence Viewer

Length: 561 bp
ATGACATTTGCACTAGTAGCTGTCTTAGCGCTGTTGCTTTCCTCAGCAGATTACAGTGCTCATGCTTCTATCAGTGACCAGGGTTCCTTGGTATATTGGGGACTCGATCGTGCTGTTGATTGCGTTAGAGCATATGTGCGTCAGCATGTTAGGTGTCGTGTACATTCAGGTTTGAACCCCGTTCTCTCATGGCTATCTCCACAGGTCATTAGATGGCTACCTGACGGGATCATACCTTCCGAGCAGATCTCTCGCCTACCTTTGGACTACATTGCTTCTCTTCCTATCGAGTACCTCGCAGAGCAGCCAGTTGAGATCATTGCACGACTACCACTTGAGCTCATATCTCGTCCGCCTACCCCGGTCATCTCGAGCTTCTTGTATCTTCTATTCGGCAGCTCCATCTTAGCCTCCCGAGATGGCTCAGCGTCGGGGTTCATGCTTGACAGAGGCTGTTATCTACGGTATCATATTCAGTTGTTTCCCATCTTCCTTCTTGGGCTGCTGCTCCATTTACAGCGTGGCTACTACGATTTTCTCTTTGCTTCGCTTCTATCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

186

Amino Acids

20.84

Weight (kDa)

6.49

Isoelectric Point (pI)

45.01

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 353
AclWI GGATC 1 cut(s) 236
AfaI GTAC 2 cut(s) 162, 293
AfeI AGCGCT 1 cut(s) 30
AfiI CCNNNNNNNGG 1 cut(s) 262
AgsI TTSAA 1 cut(s) 175
AhlI ACTAGT 1 cut(s) 13
AjnI CCWGG 1 cut(s) 78
AluBI AGCT 4 cut(s) 20, 340, 375, 399
AluI AGCT 4 cut(s) 20, 340, 375, 399
Alw21I GWGCWC 2 cut(s) 61, 342
AlwI GGATC 1 cut(s) 236
AlwNI CAGNNNCTG 1 cut(s) 453
Ama87I CYCGRG 2 cut(s) 370, 414
Aor51HI AGCGCT 1 cut(s) 30
ApeKI GCWGC 4 cut(s) 304, 396, 502, 505
AspLEI GCGC 1 cut(s) 31
AsuC2I CCSGG 1 cut(s) 362
AvaI CYCGRG 2 cut(s) 370, 414
BanII GRGCYC 1 cut(s) 342
Bbv12I GWGCWC 2 cut(s) 61, 342
BbvCI CCTCAGC 1 cut(s) 43
BbvI GCAGC 4 cut(s) 316, 408, 489, 492
BccI CCATC 4 cut(s) 207, 410, 413, 494
BcgI CGANNNNNNTGC 2 cut(s) 233, 267
BciT130I CCWGG 1 cut(s) 80
BcnI CCSGG 1 cut(s) 362
BcuI ACTAGT 1 cut(s) 13
BfaI CTAG 1 cut(s) 14
BfoI RGCGCY 1 cut(s) 32
BglII AGATCT 1 cut(s) 246
BisI GCNGC 4 cut(s) 305, 397, 503, 506
BlpI GCTNAGC 1 cut(s) 424
BlsI GCNGC 4 cut(s) 306, 398, 504, 507
Bme1390I CCNGG 2 cut(s) 80, 362
BmeT110I CYCGRG 2 cut(s) 370, 414
BmiI GGNNCC 1 cut(s) 85
BmrFI CCNGG 2 cut(s) 80, 362
BplI GAGNNNNNCTC 2 cut(s) 233, 265
Bpu10I CCTNAGC 1 cut(s) 43
Bpu1102I GCTNAGC 1 cut(s) 424
BpuEI CTTGAG 1 cut(s) 356
BpuMI CCSGG 1 cut(s) 362
BsaJI CCNNGG 3 cut(s) 79, 87, 360
Bsc4I CCNNNNNNNGG 1 cut(s) 262
Bse1I ACTGG 1 cut(s) 308
Bse3DI GCAATG 2 cut(s) 270, 318
BseBI CCWGG 1 cut(s) 80
BseDI CCNNGG 3 cut(s) 79, 87, 360
BseLI CCNNNNNNNGG 1 cut(s) 262
BseMI GCAATG 2 cut(s) 270, 318
BseMII CTCAG 2 cut(s) 57, 438
BseNI ACTGG 1 cut(s) 308
BseXI GCAGC 4 cut(s) 316, 408, 489, 492
Bsh1285I CGRYCG 1 cut(s) 109
BsiEI CGRYCG 1 cut(s) 109
BsiHKAI GWGCWC 2 cut(s) 61, 342
BsiHKCI CYCGRG 2 cut(s) 370, 414
BsiSI CCGG 1 cut(s) 362
BslFI GGGAC 1 cut(s) 114
BslI CCNNNNNNNGG 1 cut(s) 262
BsmFI GGGAC 1 cut(s) 114
BsoBI CYCGRG 2 cut(s) 370, 414
Bsp1286I GDGCHC 2 cut(s) 61, 342
Bsp1407I TGTACA 1 cut(s) 160
Bsp143I GATC 4 cut(s) 106, 228, 246, 315
Bsp1720I GCTNAGC 1 cut(s) 424
BspACI CCGC 1 cut(s) 353
BspCNI CTCAG 2 cut(s) 56, 437
BspHI TCATGA 1 cut(s) 557
BspLI GGNNCC 1 cut(s) 85
BspPI GGATC 1 cut(s) 236
BsrDI GCAATG 2 cut(s) 270, 318
BsrGI TGTACA 1 cut(s) 160
BsrI ACTGG 1 cut(s) 308
BssECI CCNNGG 3 cut(s) 79, 87, 360
BssMI GATC 4 cut(s) 106, 228, 246, 315
BssT1I CCWWGG 1 cut(s) 87
Bst2UI CCWGG 1 cut(s) 80
Bst4CI ACNGT 2 cut(s) 56, 465
Bst6I CTCTTC 1 cut(s) 285
BstAUI TGTACA 1 cut(s) 160
BstDEI CTNAG 4 cut(s) 25, 43, 406, 424
BstH2I RGCGCY 1 cut(s) 32
BstHHI GCGC 1 cut(s) 31
BstKTI GATC 4 cut(s) 109, 231, 249, 318
BstMBI GATC 4 cut(s) 106, 228, 246, 315
BstMCI CGRYCG 1 cut(s) 109
BstMWI GCNNNNNNNGC 2 cut(s) 17, 26
BstNI CCWGG 1 cut(s) 80
BstNSI RCATGY 1 cut(s) 149
BstSCI CCNGG 2 cut(s) 78, 360
BstV1I GCAGC 4 cut(s) 316, 408, 489, 492
BstX2I RGATCY 1 cut(s) 246
BstYI RGATCY 1 cut(s) 246
BtsIMutI CAGTG 2 cut(s) 61, 79
CaiI CAGNNNCTG 1 cut(s) 453
CciI TCATGA 1 cut(s) 557
CfoI GCGC 1 cut(s) 31
CseI GACGC 2 cut(s) 128, 417
Csp6I GTAC 2 cut(s) 161, 292
CviAII CATG 5 cut(s) 62, 146, 189, 439, 558
CviQI GTAC 2 cut(s) 161, 292
DdeI CTNAG 4 cut(s) 25, 43, 406, 424
DpnI GATC 4 cut(s) 108, 230, 248, 317
DpnII GATC 4 cut(s) 106, 228, 246, 315
Eam1104I CTCTTC 1 cut(s) 285
EarI CTCTTC 1 cut(s) 285
EciI GGCGGA 1 cut(s) 342
Ecl136II GAGCTC 1 cut(s) 340
Eco130I CCWWGG 1 cut(s) 87
Eco24I GRGCYC 1 cut(s) 342
Eco47III AGCGCT 1 cut(s) 30
Eco53kI GAGCTC 1 cut(s) 340
Eco88I CYCGRG 2 cut(s) 370, 414
EcoICRI GAGCTC 1 cut(s) 340
EcoRII CCWGG 1 cut(s) 78
EcoT14I CCWWGG 1 cut(s) 87
EcoT38I GRGCYC 1 cut(s) 342
ErhI CCWWGG 1 cut(s) 87
FaeI CATG 5 cut(s) 65, 149, 192, 442, 561
FaqI GGGAC 1 cut(s) 114
FatI CATG 5 cut(s) 61, 145, 188, 438, 557
FauNDI CATATG 1 cut(s) 133
Fnu4HI GCNGC 4 cut(s) 305, 397, 503, 506
FriOI GRGCYC 1 cut(s) 342
Fsp4HI GCNGC 4 cut(s) 305, 397, 503, 506
FspBI CTAG 1 cut(s) 14
GlaI GCGC 1 cut(s) 30
GluI GCNGC 4 cut(s) 305, 397, 503, 506
HaeII RGCGCY 1 cut(s) 32
HapII CCGG 1 cut(s) 362
HgaI GACGC 2 cut(s) 128, 417
HhaI GCGC 1 cut(s) 31
Hin1II CATG 5 cut(s) 65, 149, 192, 442, 561
Hin6I GCGC 1 cut(s) 29
HinP1I GCGC 1 cut(s) 29
HinfI GANTC 1 cut(s) 102
HpaII CCGG 1 cut(s) 362
Hpy166II GTNNAC 1 cut(s) 161
Hpy188I TCNGA 1 cut(s) 241
Hpy188III TCNNGA 3 cut(s) 370, 414, 558
Hpy8I GTNNAC 1 cut(s) 161
Hpy99I CGWCG 1 cut(s) 433
HpyAV CCTTC 2 cut(s) 246, 503
HpyCH4III ACNGT 2 cut(s) 56, 465
HpyCH4V TGCA 2 cut(s) 11, 323
HpyF10VI GCNNNNNNNGC 2 cut(s) 17, 26
HpyF3I CTNAG 4 cut(s) 25, 43, 406, 424
Hsp92II CATG 5 cut(s) 65, 149, 192, 442, 561
HspAI GCGC 1 cut(s) 29
Kzo9I GATC 4 cut(s) 106, 228, 246, 315
LmnI GCTCC 2 cut(s) 404, 513
LpnPI CCDG 7 cut(s) 65, 92, 153, 188, 234, 321, 375
Lsp1109I GCAGC 4 cut(s) 316, 408, 489, 492
MaeI CTAG 1 cut(s) 14
MaeIII GTNAC 1 cut(s) 74
MalI GATC 4 cut(s) 108, 230, 248, 317
MboI GATC 4 cut(s) 106, 228, 246, 315
MboII GAAGA 3 cut(s) 272, 377, 481
MflI RGATCY 1 cut(s) 246
MhlI GDGCHC 2 cut(s) 61, 342
MlyI GAGTC 1 cut(s) 96
MnlI CCTC 4 cut(s) 52, 305, 421, 443
MspI CCGG 1 cut(s) 362
MspR9I CCNGG 2 cut(s) 80, 362
MvaI CCWGG 1 cut(s) 80
MwoI GCNNNNNNNGC 2 cut(s) 17, 26
NciI CCSGG 1 cut(s) 362
NdeI CATATG 1 cut(s) 133
NdeII GATC 4 cut(s) 106, 228, 246, 315
NlaIII CATG 5 cut(s) 65, 149, 192, 442, 561
NlaIV GGNNCC 1 cut(s) 85
NmuCI GTSAC 1 cut(s) 74
NspI RCATGY 1 cut(s) 149
PaeR7I CTCGAG 1 cut(s) 370
PagI TCATGA 1 cut(s) 557
PkrI GCNGC 4 cut(s) 306, 398, 504, 507
Ple19I CGATCG 1 cut(s) 109
PleI GAGTC 1 cut(s) 96
PpsI GAGTC 1 cut(s) 96
Psp124BI GAGCTC 1 cut(s) 342
Psp6I CCWGG 1 cut(s) 78
PspGI CCWGG 1 cut(s) 78
PspN4I GGNNCC 1 cut(s) 85
PstNI CAGNNNCTG 1 cut(s) 453
PsuI RGATCY 1 cut(s) 246
PvuI CGATCG 1 cut(s) 109
RsaI GTAC 2 cut(s) 162, 293
RsaNI GTAC 2 cut(s) 161, 292
SacI GAGCTC 1 cut(s) 342
SatI GCNGC 4 cut(s) 305, 397, 503, 506
Sau3AI GATC 4 cut(s) 106, 228, 246, 315
SchI GAGTC 1 cut(s) 96
ScrFI CCNGG 2 cut(s) 80, 362
SduI GDGCHC 2 cut(s) 61, 342
Sfr274I CTCGAG 1 cut(s) 370
SlaI CTCGAG 1 cut(s) 370
SmlI CTYRAG 2 cut(s) 335, 370
SmoI CTYRAG 2 cut(s) 335, 370
SpeI ACTAGT 1 cut(s) 13
SsiI CCGC 1 cut(s) 353
SspMI CTAG 1 cut(s) 14
SstI GAGCTC 1 cut(s) 342
StyD4I CCNGG 2 cut(s) 78, 360
StyI CCWWGG 1 cut(s) 87
TaaI ACNGT 2 cut(s) 56, 465
TaqI TCGA 3 cut(s) 105, 288, 371
TatI WGTACW 1 cut(s) 160
TscAI CASTG 2 cut(s) 61, 79
TseFI GTSAC 1 cut(s) 74
TseI GCWGC 4 cut(s) 304, 396, 502, 505
Tsp45I GTSAC 1 cut(s) 74
TspDTI ATGAA 1 cut(s) 427
TspRI CASTG 2 cut(s) 61, 79
XceI RCATGY 1 cut(s) 149
XcmI CCANNNNNNNNNTGG 1 cut(s) 518
XhoI CTCGAG 1 cut(s) 370
XspI CTAG 1 cut(s) 14
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.