Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0006910

Physical Location & Seq

Genomic Coordinates Reverse (-)

834722 .. 835036

Gene Structure 315 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00333420.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 315 bp

ATGTTCCTCCTCCTCCCGTTTCTCCGGATAGCCTTCGTGACGCCATCCTCGGTTGCCGACCGGAGGATTGCATGCCTCACTACCGACATGGACGACATGCACTCTCTTTTGGTTCGTACTCATCATGCCCCGACCAACCTCACCAAGGAGATTCGGAACATGCAGCGCCACCCTCCCGGGTTTGACGCTCTGGTCCATCCACGACAGTCCGGAGGAAGTTGCACCGCAGAGAGCTCGAATTCAATGGATAGCGAGGAGTTTGGGGACACCGTAACCAAGCTTATGGAGGAGTTTGTTGGGCCCTCCCATTCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

104

Amino Acids

11.57

Weight (kDa)

5.79

Isoelectric Point (pI)

65.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006910)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g05190 FvH4_2g05191
rosa_chinensis	RchiOBHm_Chr1g0337181 RchiOBHm_Chr2g0121011
rosa_laevigata	RLG00000014847 RLG00000014850 RLG00000023918 RLG00000036182 RLG00000036367
rosa_multiflora	Rmu_sc0000903.1_g000029 Rmu_sc0002973.1_g000006 Rmu_sc0004590.1_g000006 Rmu_sc0004976.1_g000015 Rmu_sc0005657.1_g000072 Rmu_sc0008105.1_g000001 Rmu_sc0009887.1_g000001 Rmu_sc0015317.1_g000001 Rmu_sc0027068.1_g000002 Rmu_sc0030281.1_g000001 Rmu_ssc0000259.1_g000046
rosa_roxburghii	Rroxscaffold_5G00333420 Rroxscaffold_7G00210090 Rroxscaffold_7G00210150
rosa_samantha	Rh3CG243900
rosa_wichuraiana	Rw6G006560 Rw6G006570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	191
AccIII	TCCGGA	2 cut(s)	24, 209
AciI	CCGC	1 cut(s)	225
AcsI	RAATTY	1 cut(s)	238
AcyI	GRCGYC	1 cut(s)	41
AfaI	GTAC	1 cut(s)	118
AfiI	CCNNNNNNNGG	2 cut(s)	63, 145
AgsI	TTSAA	1 cut(s)	243
AluBI	AGCT	2 cut(s)	234, 280
AluI	AGCT	2 cut(s)	234, 280
Alw21I	GWGCWC	1 cut(s)	236
Ama87I	CYCGRG	1 cut(s)	176
Aor13HI	TCCGGA	2 cut(s)	24, 209
AoxI	GGCC	1 cut(s)	299
ApaI	GGGCCC	1 cut(s)	303
ApeKI	GCWGC	1 cut(s)	163
ApoI	RAATTY	1 cut(s)	238
AspLEI	GCGC	1 cut(s)	168
AspS9I	GGNCC	3 cut(s)	193, 299, 300
AsuC2I	CCSGG	2 cut(s)	177, 178
AsuHPI	GGTGA	1 cut(s)	133
AvaI	CYCGRG	1 cut(s)	176
AvaII	GGWCC	1 cut(s)	193
BaeGI	GKGCMC	1 cut(s)	303
BanII	GRGCYC	2 cut(s)	236, 303
Bbv12I	GWGCWC	1 cut(s)	236
BbvI	GCAGC	1 cut(s)	175
BccI	CCATC	2 cut(s)	52, 204
BcgI	CGANNNNNNTGC	2 cut(s)	216, 250
BcnI	CCSGG	2 cut(s)	177, 178
BfoI	RGCGCY	1 cut(s)	169
BisI	GCNGC	1 cut(s)	164
BlsI	GCNGC	1 cut(s)	165
Bme1390I	CCNGG	2 cut(s)	177, 178
Bme18I	GGWCC	1 cut(s)	193
BmeT110I	CYCGRG	1 cut(s)	176
BmgT120I	GGNCC	3 cut(s)	193, 299, 300
BmiI	GGNNCC	1 cut(s)	301
BmrFI	CCNGG	2 cut(s)	177, 178
BpuMI	CCSGG	2 cut(s)	177, 178
BsaHI	GRCGYC	1 cut(s)	41
BsaJI	CCNNGG	3 cut(s)	48, 144, 176
BsaWI	WCCGGW	3 cut(s)	24, 60, 209
Bsc4I	CCNNNNNNNGG	2 cut(s)	63, 145
BseAI	TCCGGA	2 cut(s)	24, 209
BseDI	CCNNGG	3 cut(s)	48, 144, 176
BseGI	GGATG	2 cut(s)	44, 196
BseLI	CCNNNNNNNGG	2 cut(s)	63, 145
BseRI	GAGGAG	2 cut(s)	269, 302
BseSI	GKGCMC	1 cut(s)	303
BseXI	GCAGC	1 cut(s)	175
Bsh1285I	CGRYCG	1 cut(s)	61
BshFI	GGCC	1 cut(s)	301
BsiEI	CGRYCG	1 cut(s)	61
BsiHKAI	GWGCWC	1 cut(s)	236
BsiHKCI	CYCGRG	1 cut(s)	176
BsiSI	CCGG	4 cut(s)	25, 61, 177, 210
BslFI	GGGAC	1 cut(s)	278
BslI	CCNNNNNNNGG	2 cut(s)	63, 145
BsmFI	GGGAC	1 cut(s)	278
BsnI	GGCC	1 cut(s)	301
BsoBI	CYCGRG	1 cut(s)	176
Bsp120I	GGGCCC	1 cut(s)	299
Bsp1286I	GDGCHC	2 cut(s)	236, 303
Bsp13I	TCCGGA	2 cut(s)	24, 209
BspACI	CCGC	1 cut(s)	225
BspANI	GGCC	1 cut(s)	301
BspEI	TCCGGA	2 cut(s)	24, 209
BspLI	GGNNCC	1 cut(s)	301
BssECI	CCNNGG	3 cut(s)	48, 144, 176
BssNI	GRCGYC	1 cut(s)	41
BssT1I	CCWWGG	1 cut(s)	144
Bst4CI	ACNGT	2 cut(s)	207, 271
BstACI	GRCGYC	1 cut(s)	41
BstC8I	GCNNGC	1 cut(s)	73
BstENI	CCTNNNNNAGG	1 cut(s)	143
BstF5I	GGATG	2 cut(s)	44, 196
BstH2I	RGCGCY	1 cut(s)	169
BstHHI	GCGC	1 cut(s)	168
BstMCI	CGRYCG	1 cut(s)	61
BstNSI	RCATGY	3 cut(s)	75, 100, 163
BstSCI	CCNGG	2 cut(s)	175, 176
BstSLI	GKGCMC	1 cut(s)	303
BstV1I	GCAGC	1 cut(s)	175
BstXI	CCANNNNNNTGG	1 cut(s)	283
BsuRI	GGCC	1 cut(s)	301
BtsCI	GGATG	2 cut(s)	44, 196
Cac8I	GCNNGC	1 cut(s)	73
CfoI	GCGC	1 cut(s)	168
Cfr13I	GGNCC	3 cut(s)	193, 299, 300
Cfr9I	CCCGGG	1 cut(s)	176
CseI	GACGC	2 cut(s)	49, 194
Csp6I	GTAC	1 cut(s)	117
CviAII	CATG	5 cut(s)	72, 88, 97, 125, 160
CviJI	RGCY	4 cut(s)	32, 234, 280, 301
CviKI_1	RGCY	4 cut(s)	32, 234, 280, 301
CviQI	GTAC	1 cut(s)	117
DrdI	GACNNNNNNGTC	1 cut(s)	191
DseDI	GACNNNNNNGTC	1 cut(s)	191
Ecl136II	GAGCTC	1 cut(s)	234
Eco130I	CCWWGG	1 cut(s)	144
Eco24I	GRGCYC	2 cut(s)	236, 303
Eco47I	GGWCC	1 cut(s)	193
Eco53kI	GAGCTC	1 cut(s)	234
Eco88I	CYCGRG	1 cut(s)	176
EcoICRI	GAGCTC	1 cut(s)	234
EcoNI	CCTNNNNNAGG	1 cut(s)	143
EcoO109I	RGGNCCY	1 cut(s)	300
EcoRI	GAATTC	1 cut(s)	238
EcoT14I	CCWWGG	1 cut(s)	144
EcoT38I	GRGCYC	2 cut(s)	236, 303
ErhI	CCWWGG	1 cut(s)	144
FaeI	CATG	5 cut(s)	75, 91, 100, 128, 163
FaiI	YATR	7 cut(s)	73, 89, 98, 126, 161, 284, 313
FaqI	GGGAC	1 cut(s)	278
FatI	CATG	5 cut(s)	71, 87, 96, 124, 159
Fnu4HI	GCNGC	1 cut(s)	164
FokI	GGATG	2 cut(s)	31, 183
FriOI	GRGCYC	2 cut(s)	236, 303
Fsp4HI	GCNGC	1 cut(s)	164
GlaI	GCGC	1 cut(s)	167
GluI	GCNGC	1 cut(s)	164
HaeII	RGCGCY	1 cut(s)	169
HaeIII	GGCC	1 cut(s)	301
HapII	CCGG	4 cut(s)	25, 61, 177, 210
HgaI	GACGC	2 cut(s)	49, 194
HhaI	GCGC	1 cut(s)	168
Hin1I	GRCGYC	1 cut(s)	41
Hin1II	CATG	5 cut(s)	75, 91, 100, 128, 163
Hin6I	GCGC	1 cut(s)	166
HinP1I	GCGC	1 cut(s)	166
HindIII	AAGCTT	1 cut(s)	278
HinfI	GANTC	1 cut(s)	151
HpaII	CCGG	4 cut(s)	25, 61, 177, 210
HphI	GGTGA	1 cut(s)	133
Hpy188I	TCNGA	1 cut(s)	156
Hpy188III	TCNNGA	3 cut(s)	25, 37, 210
HpyAV	CCTTC	1 cut(s)	43
HpyCH4III	ACNGT	2 cut(s)	207, 271
HpyCH4V	TGCA	4 cut(s)	71, 100, 163, 222
Hsp92I	GRCGYC	1 cut(s)	41
Hsp92II	CATG	5 cut(s)	75, 91, 100, 128, 163
HspAI	GCGC	1 cut(s)	166
Kpn2I	TCCGGA	2 cut(s)	24, 209
LpnPI	CCDG	5 cut(s)	38, 74, 176, 190, 223
Lsp1109I	GCAGC	1 cut(s)	175
MaeIII	GTNAC	2 cut(s)	37, 271
MhlI	GDGCHC	2 cut(s)	236, 303
MluCI	AATT	1 cut(s)	238
MroI	TCCGGA	2 cut(s)	24, 209
MspI	CCGG	4 cut(s)	25, 61, 177, 210
MspR9I	CCNGG	2 cut(s)	177, 178
NciI	CCSGG	2 cut(s)	177, 178
NlaIII	CATG	5 cut(s)	75, 91, 100, 128, 163
NlaIV	GGNNCC	1 cut(s)	301
NmuCI	GTSAC	1 cut(s)	37
NspI	RCATGY	3 cut(s)	75, 100, 163
PaeI	GCATGC	1 cut(s)	75
PfeI	GAWTC	1 cut(s)	151
PkrI	GCNGC	1 cut(s)	165
Psp124BI	GAGCTC	1 cut(s)	236
PspN4I	GGNNCC	1 cut(s)	301
PspOMI	GGGCCC	1 cut(s)	299
PspPI	GGNCC	3 cut(s)	193, 299, 300
RsaI	GTAC	1 cut(s)	118
RsaNI	GTAC	1 cut(s)	117
SacI	GAGCTC	1 cut(s)	236
SatI	GCNGC	1 cut(s)	164
Sau96I	GGNCC	3 cut(s)	193, 299, 300
ScrFI	CCNGG	2 cut(s)	177, 178
SduI	GDGCHC	2 cut(s)	236, 303
SetI	ASST	3 cut(s)	141, 236, 282
SinI	GGWCC	1 cut(s)	193
SmaI	CCCGGG	1 cut(s)	178
SphI	GCATGC	1 cut(s)	75
Sse9I	AATT	1 cut(s)	238
SsiI	CCGC	1 cut(s)	225
SstI	GAGCTC	1 cut(s)	236
StyD4I	CCNGG	2 cut(s)	175, 176
StyI	CCWWGG	1 cut(s)	144
TaaI	ACNGT	2 cut(s)	207, 271
TaqI	TCGA	1 cut(s)	236
TasI	AATT	1 cut(s)	238
TfiI	GAWTC	1 cut(s)	151
TseFI	GTSAC	1 cut(s)	37
TseI	GCWGC	1 cut(s)	163
Tsp45I	GTSAC	1 cut(s)	37
TspDTI	ATGAA	1 cut(s)	300
TspMI	CCCGGG	1 cut(s)	176
VpaK11BI	GGWCC	1 cut(s)	193
XagI	CCTNNNNNAGG	1 cut(s)	143
XapI	RAATTY	1 cut(s)	238
XceI	RCATGY	3 cut(s)	75, 100, 163
XmaI	CCCGGG	1 cut(s)	176

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.