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| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_2g05190 FvH4_2g05191 |
| rosa_chinensis | RchiOBHm_Chr1g0337181 RchiOBHm_Chr2g0121011 |
| rosa_laevigata | RLG00000014847 RLG00000014850 RLG00000023918 RLG00000036182 RLG00000036367 |
| rosa_multiflora | Rmu_sc0000903.1_g000029 Rmu_sc0002973.1_g000006 Rmu_sc0004590.1_g000006 Rmu_sc0004976.1_g000015 Rmu_sc0005657.1_g000072 Rmu_sc0008105.1_g000001 Rmu_sc0009887.1_g000001 Rmu_sc0015317.1_g000001 Rmu_sc0027068.1_g000002 Rmu_sc0030281.1_g000001 Rmu_ssc0000259.1_g000046 |
| rosa_roxburghii | Rroxscaffold_5G00333420 Rroxscaffold_7G00210090 Rroxscaffold_7G00210150 |
| rosa_samantha | Rh3CG243900 |
| rosa_wichuraiana | Rw6G006560 Rw6G006570 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 1750 |
| AccB1I | GGYRCC | 3 cut(s) | 77, 365, 575 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1596 |
| AccII | CGCG | 2 cut(s) | 1287, 1378 |
| AciI | CCGC | 7 cut(s) | 69, 97, 567, 750, 1016, 1376, 1378 |
| AclWI | GGATC | 3 cut(s) | 317, 815, 1412 |
| AcoI | YGGCCR | 2 cut(s) | 225, 723 |
| AcsI | RAATTY | 1 cut(s) | 22 |
| AcuI | CTGAAG | 1 cut(s) | 1092 |
| AcvI | CACGTG | 1 cut(s) | 170 |
| AcyI | GRCGYC | 1 cut(s) | 1330 |
| AdeI | CACNNNGTG | 3 cut(s) | 173, 671, 1094 |
| AfaI | GTAC | 5 cut(s) | 275, 773, 947, 991, 1469 |
| AgsI | TTSAA | 6 cut(s) | 267, 299, 509, 765, 797, 1351 |
| AhlI | ACTAGT | 3 cut(s) | 1028, 1133, 1189 |
| AjnI | CCWGG | 2 cut(s) | 385, 1254 |
| AleI | CACNNNNGTG | 1 cut(s) | 600 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 544, 576 |
| AluBI | AGCT | 6 cut(s) | 251, 644, 1196, 1516, 1552, 1576 |
| AluI | AGCT | 6 cut(s) | 251, 644, 1196, 1516, 1552, 1576 |
| Alw21I | GWGCWC | 3 cut(s) | 877, 1237, 1518 |
| AlwI | GGATC | 3 cut(s) | 317, 815, 1412 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1630 |
| AoxI | GGCC | 6 cut(s) | 123, 225, 408, 621, 723, 1149 |
| ApaI | GGGCCC | 1 cut(s) | 1153 |
| ApeKI | GCWGC | 8 cut(s) | 146, 149, 251, 644, 647, 1013, 1480, 1573 |
| ApoI | RAATTY | 1 cut(s) | 22 |
| AseI | ATTAAT | 1 cut(s) | 41 |
| AspLEI | GCGC | 1 cut(s) | 1289 |
| AspS9I | GGNCC | 2 cut(s) | 1149, 1150 |
| AsuC2I | CCSGG | 2 cut(s) | 487, 1402 |
| BaeGI | GKGCMC | 1 cut(s) | 1153 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 960, 993 |
| BanI | GGYRCC | 3 cut(s) | 77, 365, 575 |
| BanII | GRGCYC | 3 cut(s) | 1153, 1518, 1681 |
| BauI | CACGAG | 3 cut(s) | 870, 1044, 1591 |
| BbrPI | CACGTG | 1 cut(s) | 170 |
| BbsI | GAAGAC | 1 cut(s) | 1554 |
| Bbv12I | GWGCWC | 3 cut(s) | 877, 1237, 1518 |
| BbvI | GCAGC | 8 cut(s) | 133, 136, 238, 631, 634, 1025, 1492, 1585 |
| BccI | CCATC | 5 cut(s) | 122, 620, 980, 1587, 1590 |
| BceAI | ACGGC | 1 cut(s) | 1710 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 1409, 1443 |
| BciT130I | CCWGG | 2 cut(s) | 387, 1256 |
| BcnI | CCSGG | 2 cut(s) | 487, 1402 |
| BcuI | ACTAGT | 3 cut(s) | 1028, 1133, 1189 |
| BfmI | CTRYAG | 1 cut(s) | 1638 |
| BfuAI | ACCTGC | 1 cut(s) | 1750 |
| BglII | AGATCT | 1 cut(s) | 1422 |
| BlpI | GCTNAGC | 1 cut(s) | 1601 |
| Bme1390I | CCNGG | 4 cut(s) | 387, 487, 1256, 1402 |
| BmgT120I | GGNCC | 2 cut(s) | 1149, 1150 |
| BmiI | GGNNCC | 6 cut(s) | 79, 367, 577, 1150, 1151, 1680 |
| BmrFI | CCNGG | 4 cut(s) | 387, 487, 1256, 1402 |
| BmrI | ACTGGG | 1 cut(s) | 1532 |
| BmsI | GCATC | 5 cut(s) | 166, 424, 527, 664, 1087 |
| BmuI | ACTGGG | 1 cut(s) | 1532 |
| BpiI | GAAGAC | 1 cut(s) | 1554 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 1409, 1441 |
| BpmI | CTGGAG | 1 cut(s) | 336 |
| Bpu10I | CCTNAGC | 2 cut(s) | 1416, 1512 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 1601 |
| BpuEI | CTTGAG | 3 cut(s) | 231, 729, 1107 |
| BpuMI | CCSGG | 2 cut(s) | 487, 1402 |
| BsaAI | YACGTR | 1 cut(s) | 170 |
| BsaHI | GRCGYC | 1 cut(s) | 1330 |
| BsaJI | CCNNGG | 7 cut(s) | 222, 385, 485, 720, 1218, 1255, 1376 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 1066, 1096 |
| Bse118I | RCCGGY | 1 cut(s) | 356 |
| Bse1I | ACTGG | 4 cut(s) | 915, 1116, 1484, 1538 |
| Bse3DI | GCAATG | 1 cut(s) | 1446 |
| BseBI | CCWGG | 2 cut(s) | 387, 1256 |
| BseDI | CCNNGG | 7 cut(s) | 222, 385, 485, 720, 1218, 1255, 1376 |
| BseGI | GGATG | 1 cut(s) | 532 |
| BseMI | GCAATG | 1 cut(s) | 1446 |
| BseMII | CTCAG | 7 cut(s) | 111, 396, 609, 1407, 1503, 1539, 1615 |
| BseNI | ACTGG | 4 cut(s) | 915, 1116, 1484, 1538 |
| BseSI | GKGCMC | 1 cut(s) | 1153 |
| BseXI | GCAGC | 8 cut(s) | 133, 136, 238, 631, 634, 1025, 1492, 1585 |
| BsgI | GTGCAG | 1 cut(s) | 1071 |
| Bsh1236I | CGCG | 2 cut(s) | 1287, 1378 |
| Bsh1285I | CGRYCG | 1 cut(s) | 1285 |
| BshFI | GGCC | 6 cut(s) | 125, 227, 410, 623, 725, 1151 |
| BshNI | GGYRCC | 3 cut(s) | 77, 365, 575 |
| BsiEI | CGRYCG | 1 cut(s) | 1285 |
| BsiHKAI | GWGCWC | 3 cut(s) | 877, 1237, 1518 |
| BsiSI | CCGG | 3 cut(s) | 357, 487, 1401 |
| BslFI | GGGAC | 1 cut(s) | 1290 |
| BsmFI | GGGAC | 1 cut(s) | 1290 |
| BsmI | GAATGC | 1 cut(s) | 1339 |
| BsnI | GGCC | 6 cut(s) | 125, 227, 410, 623, 725, 1151 |
| Bsp120I | GGGCCC | 1 cut(s) | 1149 |
| Bsp1286I | GDGCHC | 5 cut(s) | 877, 1153, 1237, 1518, 1681 |
| Bsp1407I | TGTACA | 1 cut(s) | 945 |
| Bsp143I | GATC | 6 cut(s) | 322, 529, 820, 1282, 1404, 1422 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 1601 |
| BspACI | CCGC | 7 cut(s) | 69, 97, 567, 750, 1016, 1376, 1378 |
| BspANI | GGCC | 6 cut(s) | 125, 227, 410, 623, 725, 1151 |
| BspCNI | CTCAG | 7 cut(s) | 112, 397, 610, 1408, 1504, 1540, 1614 |
| BspFNI | CGCG | 2 cut(s) | 1287, 1378 |
| BspHI | TCATGA | 1 cut(s) | 1734 |
| BspLI | GGNNCC | 6 cut(s) | 79, 367, 577, 1150, 1151, 1680 |
| BspMI | ACCTGC | 1 cut(s) | 1750 |
| BspPI | GGATC | 3 cut(s) | 317, 815, 1412 |
| BspT107I | GGYRCC | 3 cut(s) | 77, 365, 575 |
| BsrDI | GCAATG | 1 cut(s) | 1446 |
| BsrFI | RCCGGY | 1 cut(s) | 356 |
| BsrGI | TGTACA | 1 cut(s) | 945 |
| BsrI | ACTGG | 4 cut(s) | 915, 1116, 1484, 1538 |
| BssAI | RCCGGY | 1 cut(s) | 356 |
| BssECI | CCNNGG | 7 cut(s) | 222, 385, 485, 720, 1218, 1255, 1376 |
| BssMI | GATC | 6 cut(s) | 322, 529, 820, 1282, 1404, 1422 |
| BssNI | GRCGYC | 1 cut(s) | 1330 |
| BssSI | CACGAG | 3 cut(s) | 870, 1044, 1591 |
| Bst2BI | CACGAG | 3 cut(s) | 870, 1044, 1591 |
| Bst2UI | CCWGG | 2 cut(s) | 387, 1256 |
| Bst4CI | ACNGT | 5 cut(s) | 541, 599, 1209, 1232, 1642 |
| Bst6I | CTCTTC | 2 cut(s) | 1044, 1461 |
| BstACI | GRCGYC | 1 cut(s) | 1330 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1085 |
| BstAUI | TGTACA | 1 cut(s) | 945 |
| BstBAI | YACGTR | 1 cut(s) | 170 |
| BstC8I | GCNNGC | 4 cut(s) | 160, 358, 445, 658 |
| BstDEI | CTNAG | 9 cut(s) | 120, 405, 618, 1201, 1416, 1512, 1548, 1583, 1601 |
| BstDSI | CCRYGG | 1 cut(s) | 1376 |
| BstF5I | GGATG | 1 cut(s) | 532 |
| BstFNI | CGCG | 2 cut(s) | 1287, 1378 |
| BstHHI | GCGC | 1 cut(s) | 1289 |
| BstKTI | GATC | 6 cut(s) | 325, 532, 823, 1285, 1407, 1425 |
| BstMBI | GATC | 6 cut(s) | 322, 529, 820, 1282, 1404, 1422 |
| BstMCI | CGRYCG | 1 cut(s) | 1285 |
| BstNI | CCWGG | 2 cut(s) | 387, 1256 |
| BstSCI | CCNGG | 4 cut(s) | 385, 485, 1254, 1400 |
| BstSFI | CTRYAG | 1 cut(s) | 1638 |
| BstSLI | GKGCMC | 1 cut(s) | 1153 |
| BstUI | CGCG | 2 cut(s) | 1287, 1378 |
| BstV1I | GCAGC | 8 cut(s) | 133, 136, 238, 631, 634, 1025, 1492, 1585 |
| BstV2I | GAAGAC | 1 cut(s) | 1554 |
| BstX2I | RGATCY | 1 cut(s) | 1422 |
| BstYI | RGATCY | 1 cut(s) | 1422 |
| BsuRI | GGCC | 6 cut(s) | 125, 227, 410, 623, 725, 1151 |
| BtgI | CCRYGG | 1 cut(s) | 1376 |
| BtsCI | GGATG | 1 cut(s) | 532 |
| BtsI | GCAGTG | 6 cut(s) | 81, 106, 369, 579, 909, 1074 |
| BveI | ACCTGC | 1 cut(s) | 1750 |
| Cac8I | GCNNGC | 4 cut(s) | 160, 358, 445, 658 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1630 |
| CciI | TCATGA | 1 cut(s) | 1734 |
| CfoI | GCGC | 1 cut(s) | 1289 |
| Cfr10I | RCCGGY | 1 cut(s) | 356 |
| Cfr13I | GGNCC | 2 cut(s) | 1149, 1150 |
| Cfr42I | CCGCGG | 1 cut(s) | 1379 |
| CseI | GACGC | 2 cut(s) | 1304, 1319 |
| Csp6I | GTAC | 5 cut(s) | 274, 772, 946, 990, 1468 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 1120, 1155 |
| CviAII | CATG | 9 cut(s) | 455, 461, 668, 1177, 1238, 1365, 1616, 1735, 1773 |
| CviQI | GTAC | 5 cut(s) | 274, 772, 946, 990, 1468 |
| DdeI | CTNAG | 9 cut(s) | 120, 405, 618, 1201, 1416, 1512, 1548, 1583, 1601 |
| DpnI | GATC | 6 cut(s) | 324, 531, 822, 1284, 1406, 1424 |
| DpnII | GATC | 6 cut(s) | 322, 529, 820, 1282, 1404, 1422 |
| DraI | TTTAAA | 1 cut(s) | 21 |
| DraIII | CACNNNGTG | 3 cut(s) | 173, 671, 1094 |
| EaeI | YGGCCR | 2 cut(s) | 225, 723 |
| Eam1104I | CTCTTC | 2 cut(s) | 1044, 1461 |
| EarI | CTCTTC | 2 cut(s) | 1044, 1461 |
| Ecl136II | GAGCTC | 1 cut(s) | 1516 |
| Eco24I | GRGCYC | 3 cut(s) | 1153, 1518, 1681 |
| Eco53kI | GAGCTC | 1 cut(s) | 1516 |
| Eco57I | CTGAAG | 1 cut(s) | 1092 |
| Eco72I | CACGTG | 1 cut(s) | 170 |
| EcoICRI | GAGCTC | 1 cut(s) | 1516 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1149 |
| EcoRII | CCWGG | 2 cut(s) | 385, 1254 |
| EcoT22I | ATGCAT | 1 cut(s) | 520 |
| EcoT38I | GRGCYC | 3 cut(s) | 1153, 1518, 1681 |
| FaeI | CATG | 9 cut(s) | 458, 464, 671, 1180, 1241, 1368, 1619, 1738, 1776 |
| FaqI | GGGAC | 1 cut(s) | 1290 |
| FatI | CATG | 9 cut(s) | 454, 460, 667, 1176, 1237, 1364, 1615, 1734, 1772 |
| FauI | CCCGC | 3 cut(s) | 104, 1009, 1371 |
| FauNDI | CATATG | 1 cut(s) | 1309 |
| FokI | GGATG | 1 cut(s) | 519 |
| FriOI | GRGCYC | 3 cut(s) | 1153, 1518, 1681 |
| GlaI | GCGC | 1 cut(s) | 1288 |
| GsuI | CTGGAG | 1 cut(s) | 336 |
| HaeIII | GGCC | 6 cut(s) | 125, 227, 410, 623, 725, 1151 |
| HapII | CCGG | 3 cut(s) | 357, 487, 1401 |
| HgaI | GACGC | 2 cut(s) | 1304, 1319 |
| HhaI | GCGC | 1 cut(s) | 1289 |
| Hin1I | GRCGYC | 1 cut(s) | 1330 |
| Hin1II | CATG | 9 cut(s) | 458, 464, 671, 1180, 1241, 1368, 1619, 1738, 1776 |
| Hin6I | GCGC | 1 cut(s) | 1287 |
| HinP1I | GCGC | 1 cut(s) | 1287 |
| HinfI | GANTC | 7 cut(s) | 212, 401, 497, 710, 1001, 1278, 1746 |
| HpaII | CCGG | 3 cut(s) | 357, 487, 1401 |
| Hpy188I | TCNGA | 5 cut(s) | 121, 406, 619, 1304, 1549 |
| Hpy188III | TCNNGA | 4 cut(s) | 959, 998, 1415, 1735 |
| Hpy99I | CGWCG | 1 cut(s) | 1335 |
| HpyAV | CCTTC | 9 cut(s) | 173, 293, 389, 458, 503, 671, 791, 1676, 1680 |
| HpyCH4III | ACNGT | 5 cut(s) | 541, 599, 1209, 1232, 1642 |
| HpyCH4IV | ACGT | 4 cut(s) | 169, 276, 774, 1181 |
| HpyF3I | CTNAG | 9 cut(s) | 120, 405, 618, 1201, 1416, 1512, 1548, 1583, 1601 |
| HpySE526I | ACGT | 4 cut(s) | 169, 276, 774, 1181 |
| Hsp92I | GRCGYC | 1 cut(s) | 1330 |
| Hsp92II | CATG | 9 cut(s) | 458, 464, 671, 1180, 1241, 1368, 1619, 1738, 1776 |
| HspAI | GCGC | 1 cut(s) | 1287 |
| KroI | GCCGGC | 1 cut(s) | 356 |
| KroNI | GCCGGC | 1 cut(s) | 358 |
| KspI | CCGCGG | 1 cut(s) | 1379 |
| Kzo9I | GATC | 6 cut(s) | 322, 529, 820, 1282, 1404, 1422 |
| LmnI | GCTCC | 4 cut(s) | 880, 1581, 1684, 1690 |
| Lsp1109I | GCAGC | 8 cut(s) | 133, 136, 238, 631, 634, 1025, 1492, 1585 |
| LweI | GCATC | 5 cut(s) | 166, 424, 527, 664, 1087 |
| MaeII | ACGT | 4 cut(s) | 169, 276, 774, 1181 |
| MaeIII | GTNAC | 5 cut(s) | 800, 919, 1052, 1072, 1250 |
| MalI | GATC | 6 cut(s) | 324, 531, 822, 1284, 1406, 1424 |
| MboI | GATC | 6 cut(s) | 322, 529, 820, 1282, 1404, 1422 |
| MboII | GAAGA | 6 cut(s) | 336, 824, 996, 1031, 1448, 1554 |
| MfeI | CAATTG | 1 cut(s) | 972 |
| MflI | RGATCY | 1 cut(s) | 1422 |
| MhlI | GDGCHC | 5 cut(s) | 877, 1153, 1237, 1518, 1681 |
| MluCI | AATT | 4 cut(s) | 15, 22, 340, 972 |
| MlyI | GAGTC | 2 cut(s) | 395, 1272 |
| MmeI | TCCRAC | 1 cut(s) | 958 |
| Mph1103I | ATGCAT | 1 cut(s) | 520 |
| MroNI | GCCGGC | 1 cut(s) | 356 |
| MseI | TTAA | 2 cut(s) | 20, 41 |
| MslI | CAYNNNNRTG | 5 cut(s) | 207, 459, 465, 600, 672 |
| MspA1I | CMGCKG | 2 cut(s) | 1016, 1378 |
| MspI | CCGG | 3 cut(s) | 357, 487, 1401 |
| MspR9I | CCNGG | 4 cut(s) | 387, 487, 1256, 1402 |
| MunI | CAATTG | 1 cut(s) | 972 |
| Mva1269I | GAATGC | 1 cut(s) | 1339 |
| MvaI | CCWGG | 2 cut(s) | 387, 1256 |
| MvnI | CGCG | 2 cut(s) | 1287, 1378 |
| NaeI | GCCGGC | 1 cut(s) | 358 |
| NciI | CCSGG | 2 cut(s) | 487, 1402 |
| NdeI | CATATG | 1 cut(s) | 1309 |
| NdeII | GATC | 6 cut(s) | 322, 529, 820, 1282, 1404, 1422 |
| NgoMIV | GCCGGC | 1 cut(s) | 356 |
| NlaIII | CATG | 9 cut(s) | 458, 464, 671, 1180, 1241, 1368, 1619, 1738, 1776 |
| NlaIV | GGNNCC | 6 cut(s) | 79, 367, 577, 1150, 1151, 1680 |
| NmeAIII | GCCGAG | 3 cut(s) | 203, 701, 1199 |
| NmuCI | GTSAC | 5 cut(s) | 800, 919, 1052, 1072, 1250 |
| NsiI | ATGCAT | 1 cut(s) | 520 |
| OliI | CACNNNNGTG | 1 cut(s) | 600 |
| PagI | TCATGA | 1 cut(s) | 1734 |
| PctI | GAATGC | 1 cut(s) | 1339 |
| PdiI | GCCGGC | 1 cut(s) | 358 |
| PfeI | GAWTC | 5 cut(s) | 212, 497, 710, 1001, 1746 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1596 |
| Ple19I | CGATCG | 1 cut(s) | 1285 |
| PleI | GAGTC | 2 cut(s) | 395, 1272 |
| PmaCI | CACGTG | 1 cut(s) | 170 |
| PmlI | CACGTG | 1 cut(s) | 170 |
| PpsI | GAGTC | 2 cut(s) | 395, 1272 |
| Ppu21I | YACGTR | 1 cut(s) | 170 |
| PshBI | ATTAAT | 1 cut(s) | 41 |
| Psp124BI | GAGCTC | 1 cut(s) | 1518 |
| Psp6I | CCWGG | 2 cut(s) | 385, 1254 |
| PspCI | CACGTG | 1 cut(s) | 170 |
| PspGI | CCWGG | 2 cut(s) | 385, 1254 |
| PspN4I | GGNNCC | 6 cut(s) | 79, 367, 577, 1150, 1151, 1680 |
| PspOMI | GGGCCC | 1 cut(s) | 1149 |
| PspPI | GGNCC | 2 cut(s) | 1149, 1150 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1630 |
| PsuI | RGATCY | 1 cut(s) | 1422 |
| PvuI | CGATCG | 1 cut(s) | 1285 |
| RsaI | GTAC | 5 cut(s) | 275, 773, 947, 991, 1469 |
| RsaNI | GTAC | 5 cut(s) | 274, 772, 946, 990, 1468 |
| RseI | CAYNNNNRTG | 5 cut(s) | 207, 459, 465, 600, 672 |
| SacI | GAGCTC | 1 cut(s) | 1518 |
| SacII | CCGCGG | 1 cut(s) | 1379 |
| SaqAI | TTAA | 2 cut(s) | 20, 41 |
| Sau3AI | GATC | 6 cut(s) | 322, 529, 820, 1282, 1404, 1422 |
| Sau96I | GGNCC | 2 cut(s) | 1149, 1150 |
| SchI | GAGTC | 2 cut(s) | 395, 1272 |
| ScrFI | CCNGG | 4 cut(s) | 387, 487, 1256, 1402 |
| SduI | GDGCHC | 5 cut(s) | 877, 1153, 1237, 1518, 1681 |
| SfaNI | GCATC | 5 cut(s) | 166, 424, 527, 664, 1087 |
| SfcI | CTRYAG | 1 cut(s) | 1638 |
| Sfr303I | CCGCGG | 1 cut(s) | 1379 |
| SgrBI | CCGCGG | 1 cut(s) | 1379 |
| SmiMI | CAYNNNNRTG | 5 cut(s) | 207, 459, 465, 600, 672 |
| SmlI | CTYRAG | 3 cut(s) | 246, 744, 1122 |
| SmoI | CTYRAG | 3 cut(s) | 246, 744, 1122 |
| SpeI | ACTAGT | 3 cut(s) | 1028, 1133, 1189 |
| Sse9I | AATT | 4 cut(s) | 15, 22, 340, 972 |
| SsiI | CCGC | 7 cut(s) | 69, 97, 567, 750, 1016, 1376, 1378 |
| SstI | GAGCTC | 1 cut(s) | 1518 |
| StyD4I | CCNGG | 4 cut(s) | 385, 485, 1254, 1400 |
| TaaI | ACNGT | 5 cut(s) | 541, 599, 1209, 1232, 1642 |
| TaiI | ACGT | 4 cut(s) | 172, 279, 777, 1184 |
| TaqI | TCGA | 2 cut(s) | 1281, 1464 |
| TasI | AATT | 4 cut(s) | 15, 22, 340, 972 |
| TatI | WGTACW | 1 cut(s) | 945 |
| TauI | GCSGC | 3 cut(s) | 71, 569, 752 |
| TfiI | GAWTC | 5 cut(s) | 212, 497, 710, 1001, 1746 |
| Tru1I | TTAA | 2 cut(s) | 20, 41 |
| Tru9I | TTAA | 2 cut(s) | 20, 41 |
| TseFI | GTSAC | 5 cut(s) | 800, 919, 1052, 1072, 1250 |
| TseI | GCWGC | 8 cut(s) | 146, 149, 251, 644, 647, 1013, 1480, 1573 |
| Tsp45I | GTSAC | 5 cut(s) | 800, 919, 1052, 1072, 1250 |
| TspDTI | ATGAA | 8 cut(s) | 27, 72, 123, 408, 621, 1251, 1604, 1738 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1596 |
| VspI | ATTAAT | 1 cut(s) | 41 |
| XapI | RAATTY | 1 cut(s) | 22 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1695 |
| Zsp2I | ATGCAT | 1 cut(s) | 520 |