Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0015317.1

Orthogroup ID

OG0006910

Physical Location & Seq

Genomic Coordinates Reverse (-)

211 .. 702

Gene Structure 492 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0015317.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 492 bp

atggatcgctcacagcaaacaactcgccttggcggacatcgccgcctgcctcctccagaagaaggccgtcaggccgctgccagagccggaattctccatcccggcatgcaccgtgcacgcagtcggagccctcctcctcgcccatctccttccagttcatcttctaccgctcctcctcctgtctctctggaaagtctccgtgaccagattatggtggttgagtggcgcattgcttgcctcacgacggacatggacgacatgcattctcttctggttcgcactcgtcatgccctgaccactctcacacaggagatccggaacctgcagcgccaccctcccgggtttgacgctcccggtccttcccatgccatgcaggagcctgtcgcaccagaggaaagctcggattccatggatgaagaggaatttctggacaccgtcaccaagctttgtgaggaatttgacgtgccctcccattcaaagggggagaagtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

163

Amino Acids

18.1

Weight (kDa)

5.89

Isoelectric Point (pI)

94.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006910)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g05190 FvH4_2g05191
rosa_chinensis	RchiOBHm_Chr1g0337181 RchiOBHm_Chr2g0121011
rosa_laevigata	RLG00000014847 RLG00000014850 RLG00000023918 RLG00000036182 RLG00000036367
rosa_multiflora	Rmu_sc0000903.1_g000029 Rmu_sc0002973.1_g000006 Rmu_sc0004590.1_g000006 Rmu_sc0004976.1_g000015 Rmu_sc0005657.1_g000072 Rmu_sc0008105.1_g000001 Rmu_sc0009887.1_g000001 Rmu_sc0015317.1_g000001 Rmu_sc0027068.1_g000002 Rmu_sc0030281.1_g000001 Rmu_ssc0000259.1_g000046
rosa_roxburghii	Rroxscaffold_5G00333420 Rroxscaffold_7G00210090 Rroxscaffold_7G00210150
rosa_samantha	Rh3CG243900
rosa_wichuraiana	Rw6G006560 Rw6G006570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	330
AccB7I	CCANNNNNTGG	1 cut(s)	211
AccBSI	CCGCTC	1 cut(s)	170
AccIII	TCCGGA	1 cut(s)	315
AciI	CCGC	4 cut(s)	33, 43, 75, 168
AclWI	GGATC	2 cut(s)	12, 307
AcsI	RAATTY	3 cut(s)	90, 422, 455
AfiI	CCNNNNNNNGG	4 cut(s)	62, 211, 244, 478
AgsI	TTSAA	1 cut(s)	477
AjiI	CACGTC	1 cut(s)	463
AluBI	AGCT	2 cut(s)	399, 445
AluI	AGCT	2 cut(s)	399, 445
Alw21I	GWGCWC	1 cut(s)	118
Alw26I	GTCTC	2 cut(s)	187, 200
Alw44I	GTGCAC	1 cut(s)	114
AlwI	GGATC	2 cut(s)	12, 307
Ama87I	CYCGRG	1 cut(s)	338
Aor13HI	TCCGGA	1 cut(s)	315
AoxI	GGCC	2 cut(s)	64, 72
ApaLI	GTGCAC	1 cut(s)	114
ApeKI	GCWGC	2 cut(s)	77, 325
ApoI	RAATTY	3 cut(s)	90, 422, 455
AspLEI	GCGC	2 cut(s)	228, 330
AspS9I	GGNCC	1 cut(s)	356
AsuC2I	CCSGG	4 cut(s)	102, 339, 340, 354
AsuHPI	GGTGA	1 cut(s)	430
AvaI	CYCGRG	1 cut(s)	338
AvaII	GGWCC	1 cut(s)	356
BaeGI	GKGCMC	2 cut(s)	118, 468
BanII	GRGCYC	1 cut(s)	131
Bbv12I	GWGCWC	1 cut(s)	118
BbvI	GCAGC	2 cut(s)	64, 337
BccI	CCATC	2 cut(s)	105, 151
BceAI	ACGGC	1 cut(s)	51
BcgI	CGANNNNNNTGC	2 cut(s)	5, 39
BcnI	CCSGG	4 cut(s)	102, 339, 340, 354
BcoDI	GTCTC	2 cut(s)	187, 200
BfmI	CTRYAG	1 cut(s)	323
BfoI	RGCGCY	1 cut(s)	331
BfuAI	ACCTGC	1 cut(s)	330
BisI	GCNGC	4 cut(s)	43, 75, 78, 326
BlsI	GCNGC	4 cut(s)	44, 76, 79, 327
Bme1390I	CCNGG	4 cut(s)	102, 339, 340, 354
Bme18I	GGWCC	1 cut(s)	356
BmeT110I	CYCGRG	1 cut(s)	338
BmgBI	CACGTC	1 cut(s)	463
BmgT120I	GGNCC	1 cut(s)	356
BmiI	GGNNCC	3 cut(s)	128, 320, 378
BmrFI	CCNGG	4 cut(s)	102, 339, 340, 354
BplI	GAGNNNNNCTC	4 cut(s)	118, 150, 383, 415
BpmI	CTGGAG	1 cut(s)	39
BpuMI	CCSGG	4 cut(s)	102, 339, 340, 354
BsaJI	CCNNGG	3 cut(s)	28, 338, 408
BsaWI	WCCGGW	1 cut(s)	315
BsaXI	ACNNNNNCTCC	4 cut(s)	157, 187, 452, 482
Bsc4I	CCNNNNNNNGG	4 cut(s)	62, 211, 244, 478
Bse1I	ACTGG	1 cut(s)	153
Bse3DI	GCAATG	1 cut(s)	228
BseAI	TCCGGA	1 cut(s)	315
BseDI	CCNNGG	3 cut(s)	28, 338, 408
BseGI	GGATG	2 cut(s)	97, 418
BseLI	CCNNNNNNNGG	4 cut(s)	62, 211, 244, 478
BseMI	GCAATG	1 cut(s)	228
BseNI	ACTGG	1 cut(s)	153
BseRI	GAGGAG	5 cut(s)	42, 123, 126, 162, 165
BseSI	GKGCMC	2 cut(s)	118, 468
BseXI	GCAGC	2 cut(s)	64, 337
BshFI	GGCC	2 cut(s)	66, 74
BsiHKAI	GWGCWC	1 cut(s)	118
BsiHKCI	CYCGRG	1 cut(s)	338
BsiSI	CCGG	5 cut(s)	87, 102, 316, 339, 354
BslI	CCNNNNNNNGG	4 cut(s)	62, 211, 244, 478
BsmAI	GTCTC	2 cut(s)	187, 200
BsmI	GAATGC	1 cut(s)	262
BsnI	GGCC	2 cut(s)	66, 74
BsoBI	CYCGRG	1 cut(s)	338
Bsp1286I	GDGCHC	3 cut(s)	118, 131, 468
Bsp13I	TCCGGA	1 cut(s)	315
Bsp143I	GATC	2 cut(s)	4, 312
Bsp19I	CCATGG	1 cut(s)	408
BspACI	CCGC	4 cut(s)	33, 43, 75, 168
BspANI	GGCC	2 cut(s)	66, 74
BspEI	TCCGGA	1 cut(s)	315
BspLI	GGNNCC	3 cut(s)	128, 320, 378
BspMAI	CTGCAG	1 cut(s)	327
BspMI	ACCTGC	1 cut(s)	330
BspPI	GGATC	2 cut(s)	12, 307
BsrBI	CCGCTC	1 cut(s)	170
BsrDI	GCAATG	1 cut(s)	228
BsrI	ACTGG	1 cut(s)	153
BssECI	CCNNGG	3 cut(s)	28, 338, 408
BssMI	GATC	2 cut(s)	4, 312
BssT1I	CCWWGG	2 cut(s)	28, 408
Bst4CI	ACNGT	2 cut(s)	113, 436
Bst6I	CTCTTC	2 cut(s)	273, 411
BstAPI	GCANNNNNTGC	1 cut(s)	234
BstC8I	GCNNGC	4 cut(s)	47, 107, 118, 235
BstDSI	CCRYGG	1 cut(s)	408
BstF5I	GGATG	2 cut(s)	97, 418
BstH2I	RGCGCY	1 cut(s)	331
BstHHI	GCGC	2 cut(s)	228, 330
BstKTI	GATC	2 cut(s)	7, 315
BstMAI	GTCTC	2 cut(s)	187, 200
BstMBI	GATC	2 cut(s)	4, 312
BstMWI	GCNNNNNNNGC	4 cut(s)	39, 83, 126, 234
BstNSI	RCATGY	2 cut(s)	109, 262
BstSCI	CCNGG	4 cut(s)	100, 337, 338, 352
BstSFI	CTRYAG	1 cut(s)	323
BstSLI	GKGCMC	2 cut(s)	118, 468
BstV1I	GCAGC	2 cut(s)	64, 337
BstX2I	RGATCY	1 cut(s)	312
BstYI	RGATCY	1 cut(s)	312
BsuRI	GGCC	2 cut(s)	66, 74
BtgI	CCRYGG	1 cut(s)	408
BtgZI	GCGATG	1 cut(s)	23
BtrI	CACGTC	1 cut(s)	463
BtsCI	GGATG	2 cut(s)	97, 418
BveI	ACCTGC	1 cut(s)	330
Cac8I	GCNNGC	4 cut(s)	47, 107, 118, 235
CfoI	GCGC	2 cut(s)	228, 330
Cfr13I	GGNCC	1 cut(s)	356
Cfr9I	CCCGGG	1 cut(s)	338
CseI	GACGC	1 cut(s)	356
CviAII	CATG	7 cut(s)	106, 250, 259, 287, 365, 370, 409
CviJI	RGCY	7 cut(s)	66, 74, 86, 129, 379, 399, 445
CviKI_1	RGCY	7 cut(s)	66, 74, 86, 129, 379, 399, 445
DpnI	GATC	2 cut(s)	6, 314
DpnII	GATC	2 cut(s)	4, 312
Eam1104I	CTCTTC	2 cut(s)	273, 411
EarI	CTCTTC	2 cut(s)	273, 411
EciI	GGCGGA	1 cut(s)	48
Eco130I	CCWWGG	2 cut(s)	28, 408
Eco24I	GRGCYC	1 cut(s)	131
Eco47I	GGWCC	1 cut(s)	356
Eco88I	CYCGRG	1 cut(s)	338
EcoRI	GAATTC	1 cut(s)	90
EcoT14I	CCWWGG	2 cut(s)	28, 408
EcoT22I	ATGCAT	1 cut(s)	264
EcoT38I	GRGCYC	1 cut(s)	131
ErhI	CCWWGG	2 cut(s)	28, 408
FaeI	CATG	7 cut(s)	109, 253, 262, 290, 368, 373, 412
FaiI	YATR	8 cut(s)	107, 212, 251, 260, 288, 366, 371, 410
FatI	CATG	7 cut(s)	105, 249, 258, 286, 364, 369, 408
Fnu4HI	GCNGC	4 cut(s)	43, 75, 78, 326
FokI	GGATG	2 cut(s)	84, 425
FriOI	GRGCYC	1 cut(s)	131
Fsp4HI	GCNGC	4 cut(s)	43, 75, 78, 326
GlaI	GCGC	2 cut(s)	227, 329
GluI	GCNGC	4 cut(s)	43, 75, 78, 326
GsuI	CTGGAG	1 cut(s)	39
HaeII	RGCGCY	1 cut(s)	331
HaeIII	GGCC	2 cut(s)	66, 74
HapII	CCGG	5 cut(s)	87, 102, 316, 339, 354
HgaI	GACGC	1 cut(s)	356
HhaI	GCGC	2 cut(s)	228, 330
Hin1II	CATG	7 cut(s)	109, 253, 262, 290, 368, 373, 412
Hin6I	GCGC	2 cut(s)	226, 328
HinP1I	GCGC	2 cut(s)	226, 328
HindIII	AAGCTT	1 cut(s)	443
HinfI	GANTC	1 cut(s)	404
HpaII	CCGG	5 cut(s)	87, 102, 316, 339, 354
HphI	GGTGA	1 cut(s)	430
Hpy166II	GTNNAC	1 cut(s)	116
Hpy188I	TCNGA	2 cut(s)	126, 403
Hpy188III	TCNNGA	5 cut(s)	56, 188, 241, 316, 428
Hpy8I	GTNNAC	1 cut(s)	116
Hpy99I	CGWCG	1 cut(s)	247
HpyAV	CCTTC	3 cut(s)	56, 159, 369
HpyCH4III	ACNGT	2 cut(s)	113, 436
HpyCH4IV	ACGT	1 cut(s)	462
HpyCH4V	TGCA	5 cut(s)	109, 116, 262, 325, 373
HpyF10VI	GCNNNNNNNGC	4 cut(s)	39, 83, 126, 234
HpySE526I	ACGT	1 cut(s)	462
Hsp92II	CATG	7 cut(s)	109, 253, 262, 290, 368, 373, 412
HspAI	GCGC	2 cut(s)	226, 328
Kpn2I	TCCGGA	1 cut(s)	315
Kzo9I	GATC	2 cut(s)	4, 312
LmnI	GCTCC	4 cut(s)	126, 175, 355, 376
Lsp1109I	GCAGC	2 cut(s)	64, 337
MaeII	ACGT	1 cut(s)	462
MaeIII	GTNAC	2 cut(s)	200, 436
MalI	GATC	2 cut(s)	6, 314
MbiI	CCGCTC	1 cut(s)	170
MboI	GATC	2 cut(s)	4, 312
MboII	GAAGA	4 cut(s)	71, 153, 260, 428
MflI	RGATCY	1 cut(s)	312
MhlI	GDGCHC	3 cut(s)	118, 131, 468
MluCI	AATT	3 cut(s)	90, 422, 455
MmeI	TCCRAC	1 cut(s)	104
Mph1103I	ATGCAT	1 cut(s)	264
MroI	TCCGGA	1 cut(s)	315
MspA1I	CMGCKG	1 cut(s)	77
MspI	CCGG	5 cut(s)	87, 102, 316, 339, 354
MspR9I	CCNGG	4 cut(s)	102, 339, 340, 354
Mva1269I	GAATGC	1 cut(s)	262
MwoI	GCNNNNNNNGC	4 cut(s)	39, 83, 126, 234
NciI	CCSGG	4 cut(s)	102, 339, 340, 354
NcoI	CCATGG	1 cut(s)	408
NdeII	GATC	2 cut(s)	4, 312
NlaIII	CATG	7 cut(s)	109, 253, 262, 290, 368, 373, 412
NlaIV	GGNNCC	3 cut(s)	128, 320, 378
NmuCI	GTSAC	2 cut(s)	200, 436
NsiI	ATGCAT	1 cut(s)	264
NspI	RCATGY	2 cut(s)	109, 262
PaeI	GCATGC	1 cut(s)	109
PctI	GAATGC	1 cut(s)	262
PfeI	GAWTC	1 cut(s)	404
PflFI	GACNNNGTC	1 cut(s)	434
PflMI	CCANNNNNTGG	1 cut(s)	211
PkrI	GCNGC	4 cut(s)	44, 76, 79, 327
PspN4I	GGNNCC	3 cut(s)	128, 320, 378
PspPI	GGNCC	1 cut(s)	356
PstI	CTGCAG	1 cut(s)	327
PsuI	RGATCY	1 cut(s)	312
PsyI	GACNNNGTC	1 cut(s)	434
SatI	GCNGC	4 cut(s)	43, 75, 78, 326
Sau3AI	GATC	2 cut(s)	4, 312
Sau96I	GGNCC	1 cut(s)	356
ScrFI	CCNGG	4 cut(s)	102, 339, 340, 354
SduI	GDGCHC	3 cut(s)	118, 131, 468
SetI	ASST	4 cut(s)	324, 401, 447, 465
SfcI	CTRYAG	1 cut(s)	323
SinI	GGWCC	1 cut(s)	356
SmaI	CCCGGG	1 cut(s)	340
SphI	GCATGC	1 cut(s)	109
Sse9I	AATT	3 cut(s)	90, 422, 455
SsiI	CCGC	4 cut(s)	33, 43, 75, 168
StyD4I	CCNGG	4 cut(s)	100, 337, 338, 352
StyI	CCWWGG	2 cut(s)	28, 408
TaaI	ACNGT	2 cut(s)	113, 436
TaiI	ACGT	1 cut(s)	465
TasI	AATT	3 cut(s)	90, 422, 455
TauI	GCSGC	2 cut(s)	45, 77
TfiI	GAWTC	1 cut(s)	404
TseFI	GTSAC	2 cut(s)	200, 436
TseI	GCWGC	2 cut(s)	77, 325
Tsp45I	GTSAC	2 cut(s)	200, 436
TspDTI	ATGAA	2 cut(s)	147, 429
TspGWI	ACGGA	2 cut(s)	188, 260
TspMI	CCCGGG	1 cut(s)	338
Tth111I	GACNNNGTC	1 cut(s)	434
Van91I	CCANNNNNTGG	1 cut(s)	211
VneI	GTGCAC	1 cut(s)	114
VpaK11BI	GGWCC	1 cut(s)	356
XapI	RAATTY	3 cut(s)	90, 422, 455
XceI	RCATGY	2 cut(s)	109, 262
XmaI	CCCGGG	1 cut(s)	338
Zsp2I	ATGCAT	1 cut(s)	264

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.