RchiOBHm_Chr2g0121011

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0006910
Physical Location & Seq
Reverse (-)
33850889 .. 33852162
1274 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ49359

Sequence Viewer

Length: 492 bp
ATGGTTCGCACAAAGCACACAACTCGACTTGGTGGACATCGCCGCCTGCCTCATCTAGAGGAAGGCCGTCAGGCCGCCATCCGGGCCGGGATTCTCCATCCCGGCATGCAGCGTGAACGTAGTCGGAGCCCTCCTCTTCACTCCTCAACGCCTGGTGCCTCTTCTGCTGCTCCTCCTCCTGTCTCTCTGGATAGTCTCAGTGACCAGATCCTGGTAGCTGACTGGAGAATTGCCTGCCTCACTATGGACATGGACGACATGCATTCCCTTCTGGTTCGTACTAGTCATGCTCTGACCAACCTCACACAGGAGATCCGGAACATGCAGCGTCACCCTCCCGGGTTTGACGCTCCCGCTCCCTCCACCGCTGTTCCAGCAGCAGTCGCCCCTGCAGAGACCTCAACTTCCATGGACAGCGAGGAGTTTCAGGATCATGTCGTCAAGCTTATGGAGGAAGTCGAAGGGCATTCCCGTTCAAAGGGGGAGAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

163

Amino Acids

17.82

Weight (kDa)

6.54

Isoelectric Point (pI)

67.8

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 155
AccB7I CCANNNNNTGG 1 cut(s) 211
AccBSI CCGCTC 1 cut(s) 356
AccIII TCCGGA 1 cut(s) 315
AciI CCGC 4 cut(s) 43, 75, 354, 366
AclWI GGATC 3 cut(s) 202, 307, 438
AfaI GTAC 1 cut(s) 280
AfiI CCNNNNNNNGG 5 cut(s) 81, 211, 244, 307, 478
AgsI TTSAA 1 cut(s) 477
AhlI ACTAGT 1 cut(s) 281
AjnI CCWGG 2 cut(s) 151, 210
AluBI AGCT 2 cut(s) 218, 445
AluI AGCT 2 cut(s) 218, 445
Alw26I GTCTC 3 cut(s) 187, 200, 389
AlwI GGATC 3 cut(s) 202, 307, 438
AlwNI CAGNNNCTG 1 cut(s) 211
Ama87I CYCGRG 1 cut(s) 338
Aor13HI TCCGGA 1 cut(s) 315
AoxI GGCC 3 cut(s) 64, 72, 84
ApeKI GCWGC 4 cut(s) 109, 167, 325, 377
AspS9I GGNCC 1 cut(s) 84
AsuC2I CCSGG 5 cut(s) 83, 88, 102, 339, 340
AsuHPI GGTGA 1 cut(s) 323
AvaI CYCGRG 1 cut(s) 338
BanI GGYRCC 1 cut(s) 155
BanII GRGCYC 1 cut(s) 131
BbvI GCAGC 4 cut(s) 121, 154, 337, 389
BccI CCATC 2 cut(s) 86, 105
BceAI ACGGC 1 cut(s) 51
BcgI CGANNNNNNTGC 2 cut(s) 5, 39
BciT130I CCWGG 2 cut(s) 153, 212
BcnI CCSGG 5 cut(s) 83, 88, 102, 339, 340
BcoDI GTCTC 3 cut(s) 187, 200, 389
BcuI ACTAGT 1 cut(s) 281
BfaI CTAG 2 cut(s) 56, 282
BfmI CTRYAG 1 cut(s) 390
BglI GCCNNNNNGGC 1 cut(s) 83
BisI GCNGC 6 cut(s) 43, 75, 110, 168, 326, 378
BlsI GCNGC 6 cut(s) 44, 76, 111, 169, 327, 379
Bme1390I CCNGG 7 cut(s) 83, 88, 102, 153, 212, 339, 340
BmeT110I CYCGRG 1 cut(s) 338
BmgT120I GGNCC 1 cut(s) 84
BmiI GGNNCC 2 cut(s) 128, 157
BmrFI CCNGG 7 cut(s) 83, 88, 102, 153, 212, 339, 340
BplI GAGNNNNNCTC 2 cut(s) 118, 150
BpmI CTGGAG 1 cut(s) 244
BpuMI CCSGG 5 cut(s) 83, 88, 102, 339, 340
BsaI GGTCTC 1 cut(s) 389
BsaJI CCNNGG 2 cut(s) 338, 408
BsaWI WCCGGW 1 cut(s) 315
Bsc4I CCNNNNNNNGG 5 cut(s) 81, 211, 244, 307, 478
Bse1I ACTGG 1 cut(s) 227
BseAI TCCGGA 1 cut(s) 315
BseBI CCWGG 2 cut(s) 153, 212
BseDI CCNNGG 2 cut(s) 338, 408
BseGI GGATG 2 cut(s) 78, 97
BseLI CCNNNNNNNGG 5 cut(s) 81, 211, 244, 307, 478
BseMII CTCAG 1 cut(s) 211
BseNI ACTGG 1 cut(s) 227
BseRI GAGGAG 5 cut(s) 123, 133, 162, 165, 434
BseXI GCAGC 4 cut(s) 121, 154, 337, 389
BshFI GGCC 3 cut(s) 66, 74, 86
BshNI GGYRCC 1 cut(s) 155
BsiHKCI CYCGRG 1 cut(s) 338
BsiSI CCGG 5 cut(s) 82, 87, 102, 316, 339
BslI CCNNNNNNNGG 5 cut(s) 81, 211, 244, 307, 478
BsmAI GTCTC 3 cut(s) 187, 200, 389
BsmI GAATGC 2 cut(s) 262, 466
BsnI GGCC 3 cut(s) 66, 74, 86
Bso31I GGTCTC 1 cut(s) 389
BsoBI CYCGRG 1 cut(s) 338
Bsp1286I GDGCHC 1 cut(s) 131
Bsp13I TCCGGA 1 cut(s) 315
Bsp143I GATC 3 cut(s) 207, 312, 430
Bsp19I CCATGG 1 cut(s) 408
BspACI CCGC 4 cut(s) 43, 75, 354, 366
BspANI GGCC 3 cut(s) 66, 74, 86
BspCNI CTCAG 1 cut(s) 210
BspEI TCCGGA 1 cut(s) 315
BspLI GGNNCC 2 cut(s) 128, 157
BspMAI CTGCAG 1 cut(s) 394
BspPI GGATC 3 cut(s) 202, 307, 438
BspT107I GGYRCC 1 cut(s) 155
BspTNI GGTCTC 1 cut(s) 389
BsrBI CCGCTC 1 cut(s) 356
BsrI ACTGG 1 cut(s) 227
BssECI CCNNGG 2 cut(s) 338, 408
BssMI GATC 3 cut(s) 207, 312, 430
BssT1I CCWWGG 1 cut(s) 408
Bst2UI CCWGG 2 cut(s) 153, 212
Bst6I CTCTTC 2 cut(s) 141, 166
BstC8I GCNNGC 3 cut(s) 47, 107, 235
BstDEI CTNAG 1 cut(s) 197
BstDSI CCRYGG 1 cut(s) 408
BstENI CCTNNNNNAGG 1 cut(s) 305
BstF5I GGATG 2 cut(s) 78, 97
BstKTI GATC 3 cut(s) 210, 315, 433
BstMAI GTCTC 3 cut(s) 187, 200, 389
BstMBI GATC 3 cut(s) 207, 312, 430
BstMWI GCNNNNNNNGC 4 cut(s) 83, 164, 374, 383
BstNI CCWGG 2 cut(s) 153, 212
BstNSI RCATGY 3 cut(s) 109, 262, 325
BstSCI CCNGG 7 cut(s) 81, 86, 100, 151, 210, 337, 338
BstSFI CTRYAG 1 cut(s) 390
BstV1I GCAGC 4 cut(s) 121, 154, 337, 389
BstX2I RGATCY 2 cut(s) 207, 312
BstYI RGATCY 2 cut(s) 207, 312
BsuRI GGCC 3 cut(s) 66, 74, 86
BtgI CCRYGG 1 cut(s) 408
BtgZI GCGATG 1 cut(s) 23
BtsCI GGATG 2 cut(s) 78, 97
BtsIMutI CAGTG 1 cut(s) 205
Cac8I GCNNGC 3 cut(s) 47, 107, 235
CaiI CAGNNNCTG 1 cut(s) 211
Cfr13I GGNCC 1 cut(s) 84
Cfr9I CCCGGG 1 cut(s) 338
CseI GACGC 2 cut(s) 317, 356
Csp6I GTAC 1 cut(s) 279
CviAII CATG 7 cut(s) 106, 250, 259, 287, 322, 409, 434
CviJI RGCY 6 cut(s) 66, 74, 86, 129, 218, 445
CviKI_1 RGCY 6 cut(s) 66, 74, 86, 129, 218, 445
CviQI GTAC 1 cut(s) 279
DdeI CTNAG 1 cut(s) 197
DpnI GATC 3 cut(s) 209, 314, 432
DpnII GATC 3 cut(s) 207, 312, 430
Eam1104I CTCTTC 2 cut(s) 141, 166
EarI CTCTTC 2 cut(s) 141, 166
Eco130I CCWWGG 1 cut(s) 408
Eco24I GRGCYC 1 cut(s) 131
Eco31I GGTCTC 1 cut(s) 389
Eco88I CYCGRG 1 cut(s) 338
EcoNI CCTNNNNNAGG 1 cut(s) 305
EcoRII CCWGG 2 cut(s) 151, 210
EcoT14I CCWWGG 1 cut(s) 408
EcoT22I ATGCAT 1 cut(s) 264
EcoT38I GRGCYC 1 cut(s) 131
ErhI CCWWGG 1 cut(s) 408
FaeI CATG 7 cut(s) 109, 253, 262, 290, 325, 412, 437
FaiI YATR 9 cut(s) 107, 245, 251, 260, 288, 323, 410, 435, 449
FatI CATG 7 cut(s) 105, 249, 258, 286, 321, 408, 433
FauI CCCGC 1 cut(s) 361
Fnu4HI GCNGC 6 cut(s) 43, 75, 110, 168, 326, 378
FokI GGATG 2 cut(s) 65, 84
FriOI GRGCYC 1 cut(s) 131
Fsp4HI GCNGC 6 cut(s) 43, 75, 110, 168, 326, 378
FspBI CTAG 2 cut(s) 56, 282
GluI GCNGC 6 cut(s) 43, 75, 110, 168, 326, 378
GsuI CTGGAG 1 cut(s) 244
HaeIII GGCC 3 cut(s) 66, 74, 86
HapII CCGG 5 cut(s) 82, 87, 102, 316, 339
HgaI GACGC 2 cut(s) 317, 356
Hin1II CATG 7 cut(s) 109, 253, 262, 290, 325, 412, 437
HindIII AAGCTT 1 cut(s) 443
HinfI GANTC 1 cut(s) 91
HpaII CCGG 5 cut(s) 82, 87, 102, 316, 339
HphI GGTGA 1 cut(s) 323
Hpy166II GTNNAC 2 cut(s) 35, 116
Hpy188I TCNGA 2 cut(s) 126, 294
Hpy188III TCNNGA 4 cut(s) 56, 188, 316, 428
Hpy8I GTNNAC 2 cut(s) 35, 116
HpyAV CCTTC 3 cut(s) 56, 278, 455
HpyCH4IV ACGT 1 cut(s) 118
HpyCH4V TGCA 4 cut(s) 109, 262, 325, 392
HpyF10VI GCNNNNNNNGC 4 cut(s) 83, 164, 374, 383
HpyF3I CTNAG 1 cut(s) 197
HpySE526I ACGT 1 cut(s) 118
Hsp92II CATG 7 cut(s) 109, 253, 262, 290, 325, 412, 437
Kpn2I TCCGGA 1 cut(s) 315
Kzo9I GATC 3 cut(s) 207, 312, 430
LmnI GCTCC 4 cut(s) 126, 175, 355, 361
Lsp1109I GCAGC 4 cut(s) 121, 154, 337, 389
MaeI CTAG 2 cut(s) 56, 282
MaeII ACGT 1 cut(s) 118
MaeIII GTNAC 2 cut(s) 200, 329
MalI GATC 3 cut(s) 209, 314, 432
MbiI CCGCTC 1 cut(s) 356
MboI GATC 3 cut(s) 207, 312, 430
MboII GAAGA 2 cut(s) 128, 153
MflI RGATCY 2 cut(s) 207, 312
MhlI GDGCHC 1 cut(s) 131
MluCI AATT 1 cut(s) 228
MmeI TCCRAC 1 cut(s) 104
Mph1103I ATGCAT 1 cut(s) 264
MroI TCCGGA 1 cut(s) 315
MspA1I CMGCKG 1 cut(s) 368
MspI CCGG 5 cut(s) 82, 87, 102, 316, 339
MspR9I CCNGG 7 cut(s) 83, 88, 102, 153, 212, 339, 340
Mva1269I GAATGC 2 cut(s) 262, 466
MvaI CCWGG 2 cut(s) 153, 212
MwoI GCNNNNNNNGC 4 cut(s) 83, 164, 374, 383
NciI CCSGG 5 cut(s) 83, 88, 102, 339, 340
NcoI CCATGG 1 cut(s) 408
NdeII GATC 3 cut(s) 207, 312, 430
NlaIII CATG 7 cut(s) 109, 253, 262, 290, 325, 412, 437
NlaIV GGNNCC 2 cut(s) 128, 157
NmuCI GTSAC 2 cut(s) 200, 329
NsiI ATGCAT 1 cut(s) 264
NspI RCATGY 3 cut(s) 109, 262, 325
PaeI GCATGC 1 cut(s) 109
PctI GAATGC 2 cut(s) 262, 466
PfeI GAWTC 1 cut(s) 91
PflMI CCANNNNNTGG 1 cut(s) 211
PkrI GCNGC 6 cut(s) 44, 76, 111, 169, 327, 379
Psp6I CCWGG 2 cut(s) 151, 210
PspGI CCWGG 2 cut(s) 151, 210
PspN4I GGNNCC 2 cut(s) 128, 157
PspPI GGNCC 1 cut(s) 84
PstI CTGCAG 1 cut(s) 394
PstNI CAGNNNCTG 1 cut(s) 211
PsuI RGATCY 2 cut(s) 207, 312
RsaI GTAC 1 cut(s) 280
RsaNI GTAC 1 cut(s) 279
SatI GCNGC 6 cut(s) 43, 75, 110, 168, 326, 378
Sau3AI GATC 3 cut(s) 207, 312, 430
Sau96I GGNCC 1 cut(s) 84
ScrFI CCNGG 7 cut(s) 83, 88, 102, 153, 212, 339, 340
SduI GDGCHC 1 cut(s) 131
SetI ASST 5 cut(s) 121, 220, 303, 401, 447
SfcI CTRYAG 1 cut(s) 390
SmaI CCCGGG 1 cut(s) 340
SpeI ACTAGT 1 cut(s) 281
SphI GCATGC 1 cut(s) 109
Sse9I AATT 1 cut(s) 228
SsiI CCGC 4 cut(s) 43, 75, 354, 366
SspMI CTAG 2 cut(s) 56, 282
StyD4I CCNGG 7 cut(s) 81, 86, 100, 151, 210, 337, 338
StyI CCWWGG 1 cut(s) 408
TaiI ACGT 1 cut(s) 121
TaqI TCGA 2 cut(s) 25, 459
TasI AATT 1 cut(s) 228
TauI GCSGC 2 cut(s) 45, 77
TfiI GAWTC 1 cut(s) 91
TscAI CASTG 1 cut(s) 205
TseFI GTSAC 2 cut(s) 200, 329
TseI GCWGC 4 cut(s) 109, 167, 325, 377
Tsp45I GTSAC 2 cut(s) 200, 329
TspMI CCCGGG 1 cut(s) 338
TspRI CASTG 1 cut(s) 205
Van91I CCANNNNNTGG 1 cut(s) 211
XagI CCTNNNNNAGG 1 cut(s) 305
XbaI TCTAGA 1 cut(s) 55
XceI RCATGY 3 cut(s) 109, 262, 325
XmaI CCCGGG 1 cut(s) 338
XspI CTAG 2 cut(s) 56, 282
Zsp2I ATGCAT 1 cut(s) 264
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.