Rh3CG243900

receptor-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3C
OG0006910
Physical Location & Seq
Forward (+)
23422115 .. 23435535
13421 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3CG243900.1

Sequence Viewer

Length: 708 bp
ATGAAGACGAACGGTGCCGTCTCAGGTGACCTACCCAACTCTATTGGAAATCTTAAGATGTTGTCAAGCATAGATATTTCAAATTGCAGTTTCACTAGATCAGTTCCCAAGTGGATTGAAAACCTCACACAATTGGCTCACCTGGACATGTCAGGGAACAGATTTAATAGTCCCATTAGTTCTATTCACTGGGAAACCCTTGTTAATCTGGAATGGCTTGACTTGGGCAGAAATAAACTCTATGGGACTATTCCTTCATCTGTTGTTTCTCTTCCCATGCTGAACATACTAACACTATCCCACAATCGGTTCTCGGGTCAAGTCCCTGAATTTTCCAATACCTCTTCGCCCTTACTTGACACCCTTGATTTGGAAAACAACAATTTGGAAGGACACATACCAACATCTATCTTCAATCTTCAAGGGCTTCTGGTTCTCAATCTTTCTTCAAACAACTTCAGTAGCTTTCCTTTTAATGGTCCTCGGCTGCCCAGAAATCTTTCATCGGTGGATTCTTCCCACAATAGCTTGTTGTATGATTACAATGGCACCGATTCCTCCTCCCTACAGATTGAGACCTTGGTATTGGCTTTTAATAAGTTGACAACATTCCCAGATTTCTTGAGAAATCAGACCACATTAGACCACTTGGATCTTTCAAACAATCAGATTCAAGAGATGCAATTACGACTATCATCAAAGGTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0008150 GO:0009888 GO:0010073 GO:0032501 GO:0032502 GO:0048507 GO:0048856
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRRNT_2 LRR_1 LRR_6 LRR_8

Protein Analysis

235

Amino Acids

26.14

Weight (kDa)

5.41

Isoelectric Point (pI)

46.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_8 PF13855 56 - 104 4.2e-06 Leucine rich repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 14, 548
AclWI GGATC 1 cut(s) 660
AcsI RAATTY 1 cut(s) 329
AcuI CTGAAG 1 cut(s) 442
AfiI CCNNNNNNNGG 3 cut(s) 306, 370, 476
AflII CTTAAG 1 cut(s) 53
AflIII ACRYGT 1 cut(s) 147
AgsI TTSAA 7 cut(s) 81, 119, 415, 422, 450, 660, 674
AjnI CCWGG 1 cut(s) 141
AluBI AGCT 2 cut(s) 465, 528
AluI AGCT 2 cut(s) 465, 528
Alw26I GTCTC 2 cut(s) 25, 569
AlwI GGATC 1 cut(s) 660
Ama87I CYCGRG 1 cut(s) 313
ApeKI GCWGC 1 cut(s) 487
ApoI RAATTY 1 cut(s) 329
Asp700I GAANNNNTTC 1 cut(s) 499
AspS9I GGNCC 1 cut(s) 479
AsuHPI GGTGA 2 cut(s) 38, 131
AvaI CYCGRG 1 cut(s) 313
AvaII GGWCC 1 cut(s) 479
BanI GGYRCC 2 cut(s) 14, 548
BarI GAAGNNNNNNTAC 2 cut(s) 381, 413
BbsI GAAGAC 1 cut(s) 11
BbvI GCAGC 1 cut(s) 474
BceAI ACGGC 1 cut(s) 2
BciT130I CCWGG 1 cut(s) 143
BcoDI GTCTC 2 cut(s) 25, 569
BfaI CTAG 1 cut(s) 96
BfmI CTRYAG 1 cut(s) 566
BfrI CTTAAG 1 cut(s) 53
BisI GCNGC 1 cut(s) 488
BlsI GCNGC 1 cut(s) 489
Bme1390I CCNGG 1 cut(s) 143
Bme18I GGWCC 1 cut(s) 479
BmeT110I CYCGRG 1 cut(s) 313
BmgT120I GGNCC 1 cut(s) 479
BmiI GGNNCC 2 cut(s) 16, 550
BmrFI CCNGG 1 cut(s) 143
BmrI ACTGGG 1 cut(s) 199
BmsI GCATC 1 cut(s) 669
BmuI ACTGGG 1 cut(s) 199
BpiI GAAGAC 1 cut(s) 11
BpuEI CTTGAG 1 cut(s) 643
BsaI GGTCTC 1 cut(s) 569
BsaJI CCNNGG 2 cut(s) 482, 579
Bsc4I CCNNNNNNNGG 3 cut(s) 306, 370, 476
Bse1I ACTGG 1 cut(s) 194
BseBI CCWGG 1 cut(s) 143
BseDI CCNNGG 2 cut(s) 482, 579
BseLI CCNNNNNNNGG 3 cut(s) 306, 370, 476
BseMII CTCAG 1 cut(s) 36
BseNI ACTGG 1 cut(s) 194
BseRI GAGGAG 1 cut(s) 550
BseXI GCAGC 1 cut(s) 474
BshNI GGYRCC 2 cut(s) 14, 548
BsiHKCI CYCGRG 1 cut(s) 313
BslFI GGGAC 3 cut(s) 156, 259, 308
BslI CCNNNNNNNGG 3 cut(s) 306, 370, 476
BsmAI GTCTC 2 cut(s) 25, 569
BsmBI CGTCTC 1 cut(s) 25
BsmFI GGGAC 3 cut(s) 156, 259, 308
Bso31I GGTCTC 1 cut(s) 569
BsoBI CYCGRG 1 cut(s) 313
Bsp143I GATC 2 cut(s) 98, 652
BspCNI CTCAG 1 cut(s) 35
BspLI GGNNCC 2 cut(s) 16, 550
BspPI GGATC 1 cut(s) 660
BspT107I GGYRCC 2 cut(s) 14, 548
BspTI CTTAAG 1 cut(s) 53
BspTNI GGTCTC 1 cut(s) 569
BsrI ACTGG 1 cut(s) 194
BssECI CCNNGG 2 cut(s) 482, 579
BssMI GATC 2 cut(s) 98, 652
BssT1I CCWWGG 1 cut(s) 579
Bst2UI CCWGG 1 cut(s) 143
Bst4CI ACNGT 1 cut(s) 14
Bst6I CTCTTC 2 cut(s) 276, 349
BstAFI CTTAAG 1 cut(s) 53
BstDEI CTNAG 1 cut(s) 22
BstEII GGTNACC 1 cut(s) 26
BstKTI GATC 2 cut(s) 101, 655
BstMAI GTCTC 2 cut(s) 25, 569
BstMBI GATC 2 cut(s) 98, 652
BstNI CCWGG 1 cut(s) 143
BstNSI RCATGY 1 cut(s) 151
BstPI GGTNACC 1 cut(s) 26
BstSCI CCNGG 1 cut(s) 141
BstSFI CTRYAG 1 cut(s) 566
BstV1I GCAGC 1 cut(s) 474
BstV2I GAAGAC 1 cut(s) 11
BstX2I RGATCY 1 cut(s) 652
BstYI RGATCY 1 cut(s) 652
BtsIMutI CAGTG 1 cut(s) 187
Cfr13I GGNCC 1 cut(s) 479
CviAII CATG 2 cut(s) 148, 277
CviJI RGCY 7 cut(s) 137, 217, 427, 465, 487, 528, 590
CviKI_1 RGCY 7 cut(s) 137, 217, 427, 465, 487, 528, 590
DdeI CTNAG 1 cut(s) 22
DpnI GATC 2 cut(s) 100, 654
DpnII GATC 2 cut(s) 98, 652
Eam1104I CTCTTC 2 cut(s) 276, 349
EarI CTCTTC 2 cut(s) 276, 349
Eco130I CCWWGG 1 cut(s) 579
Eco31I GGTCTC 1 cut(s) 569
Eco47I GGWCC 1 cut(s) 479
Eco57I CTGAAG 1 cut(s) 442
Eco88I CYCGRG 1 cut(s) 313
Eco91I GGTNACC 1 cut(s) 26
EcoO65I GGTNACC 1 cut(s) 26
EcoRII CCWGG 1 cut(s) 141
EcoT14I CCWWGG 1 cut(s) 579
ErhI CCWWGG 1 cut(s) 579
Esp3I CGTCTC 1 cut(s) 25
FaeI CATG 2 cut(s) 151, 280
FaiI YATR 7 cut(s) 71, 149, 243, 278, 287, 398, 537
FaqI GGGAC 3 cut(s) 156, 259, 308
FatI CATG 2 cut(s) 147, 276
Fnu4HI GCNGC 1 cut(s) 488
Fsp4HI GCNGC 1 cut(s) 488
FspBI CTAG 1 cut(s) 96
GluI GCNGC 1 cut(s) 488
Hin1II CATG 2 cut(s) 151, 280
HincII GTYRAC 1 cut(s) 603
HindII GTYRAC 1 cut(s) 603
HinfI GANTC 3 cut(s) 512, 554, 670
HphI GGTGA 2 cut(s) 38, 131
Hpy166II GTNNAC 1 cut(s) 603
Hpy188I TCNGA 2 cut(s) 633, 669
Hpy188III TCNNGA 3 cut(s) 209, 622, 674
Hpy8I GTNNAC 1 cut(s) 603
HpyAV CCTTC 2 cut(s) 264, 383
HpyCH4III ACNGT 1 cut(s) 14
HpyCH4V TGCA 2 cut(s) 87, 682
HpyF3I CTNAG 1 cut(s) 22
Hsp92II CATG 2 cut(s) 151, 280
Kzo9I GATC 2 cut(s) 98, 652
Lsp1109I GCAGC 1 cut(s) 474
LweI GCATC 1 cut(s) 669
MaeI CTAG 1 cut(s) 96
MaeIII GTNAC 1 cut(s) 26
MalI GATC 2 cut(s) 100, 654
MboI GATC 2 cut(s) 98, 652
MboII GAAGA 7 cut(s) 16, 263, 336, 403, 410, 438, 507
MfeI CAATTG 1 cut(s) 131
MflI RGATCY 1 cut(s) 652
MluCI AATT 5 cut(s) 82, 131, 329, 382, 683
MnlI CCTC 5 cut(s) 134, 352, 492, 568, 571
MroXI GAANNNNTTC 1 cut(s) 499
MseI TTAA 5 cut(s) 54, 165, 204, 474, 594
MspCI CTTAAG 1 cut(s) 53
MspR9I CCNGG 1 cut(s) 143
MunI CAATTG 1 cut(s) 131
MvaI CCWGG 1 cut(s) 143
NdeII GATC 2 cut(s) 98, 652
NlaIII CATG 2 cut(s) 151, 280
NlaIV GGNNCC 2 cut(s) 16, 550
NmeAIII GCCGAG 1 cut(s) 463
NmuCI GTSAC 1 cut(s) 26
NspI RCATGY 1 cut(s) 151
PciI ACATGT 1 cut(s) 147
PdmI GAANNNNTTC 1 cut(s) 499
PfeI GAWTC 3 cut(s) 512, 554, 670
PkrI GCNGC 1 cut(s) 489
PscI ACATGT 1 cut(s) 147
Psp6I CCWGG 1 cut(s) 141
PspEI GGTNACC 1 cut(s) 26
PspGI CCWGG 1 cut(s) 141
PspN4I GGNNCC 2 cut(s) 16, 550
PspPI GGNCC 1 cut(s) 479
PsuI RGATCY 1 cut(s) 652
SaqAI TTAA 5 cut(s) 54, 165, 204, 474, 594
SatI GCNGC 1 cut(s) 488
Sau3AI GATC 2 cut(s) 98, 652
Sau96I GGNCC 1 cut(s) 479
ScrFI CCNGG 1 cut(s) 143
SetI ASST 9 cut(s) 28, 33, 126, 144, 344, 467, 530, 581, 705
SfaNI GCATC 1 cut(s) 669
SfcI CTRYAG 1 cut(s) 566
SinI GGWCC 1 cut(s) 479
SmlI CTYRAG 2 cut(s) 53, 622
SmoI CTYRAG 2 cut(s) 53, 622
Sse9I AATT 5 cut(s) 82, 131, 329, 382, 683
SspMI CTAG 1 cut(s) 96
StyD4I CCNGG 1 cut(s) 141
StyI CCWWGG 1 cut(s) 579
TaaI ACNGT 1 cut(s) 14
TasI AATT 5 cut(s) 82, 131, 329, 382, 683
TfiI GAWTC 3 cut(s) 512, 554, 670
Tru1I TTAA 5 cut(s) 54, 165, 204, 474, 594
Tru9I TTAA 5 cut(s) 54, 165, 204, 474, 594
TscAI CASTG 1 cut(s) 194
TseFI GTSAC 1 cut(s) 26
TseI GCWGC 1 cut(s) 487
Tsp45I GTSAC 1 cut(s) 26
TspDTI ATGAA 3 cut(s) 17, 246, 492
TspRI CASTG 1 cut(s) 194
Vha464I CTTAAG 1 cut(s) 53
VpaK11BI GGWCC 1 cut(s) 479
XapI RAATTY 1 cut(s) 329
XceI RCATGY 1 cut(s) 151
XmnI GAANNNNTTC 1 cut(s) 499
XspI CTAG 1 cut(s) 96
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.