Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0006910

Physical Location & Seq

Genomic Coordinates Forward (+)

28873289 .. 28875222

Gene Structure 1934 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ56509

Sequence Viewer

CDS Protein Promoter (2k)

Length: 603 bp

ATGAAATTTACACACCCAAAATTACAAGCCACACACCCCTTTATTTTTTTAATAATACTTCATGTCACCTCTTTTTACACTTTCAACACCCTCAAAGTCAGATTTTGTTTTTGGTTTTTTTGGGTCTTCTCTTCTCTCTCTCTCACTCCCTCTCTTTTCCAGACCACGACCAAAACTCTTCACTTTTCTCTCTTTCTTCTCCAGACAACATACCAGAAAGTATTACCGAGATTAATTCATAAATCCCAAAGTTTCCTATTTTTGCATTCTGGCCCCCGAGACTCTCTCTTCTCTCTCCTCCGCGCCTCCTCAGAACCGTCGGGTCCCGACCGACCCGACCCGATTTTTCCGGCGCCGTCGAACGTCCTCCGGCCACGGACCCGAGCCAGACCGGCTCGTCTCGGCCTGCTCCTCCTCCCTGTGGTGTCATCTCGCCCTGCCACCGCCCCCAGTCGGAGATCGAAGCCACCCCAGACGCACAATCGGGAATCGATTGGTTTCGCGTGCTCCGGCAACTTTCCGGCGGATTTCTTCACTTTTTTGGACTCTCCTGTTCCTCCTTATCATCCCCATATAAGCCTTGCATCACGATTTGGAGTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

200

Amino Acids

22.76

Weight (kDa)

11.3

Isoelectric Point (pI)

63.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006910)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g05190 FvH4_2g05191
rosa_chinensis	RchiOBHm_Chr1g0337181 RchiOBHm_Chr2g0121011
rosa_laevigata	RLG00000014847 RLG00000014850 RLG00000023918 RLG00000036182 RLG00000036367
rosa_multiflora	Rmu_sc0000903.1_g000029 Rmu_sc0002973.1_g000006 Rmu_sc0004590.1_g000006 Rmu_sc0004976.1_g000015 Rmu_sc0005657.1_g000072 Rmu_sc0008105.1_g000001 Rmu_sc0009887.1_g000001 Rmu_sc0015317.1_g000001 Rmu_sc0027068.1_g000002 Rmu_sc0030281.1_g000001 Rmu_ssc0000259.1_g000046
rosa_roxburghii	Rroxscaffold_5G00333420 Rroxscaffold_7G00210090 Rroxscaffold_7G00210150
rosa_samantha	Rh3CG243900
rosa_wichuraiana	Rw6G006560 Rw6G006570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	396
AccB1I	GGYRCC	1 cut(s)	352
AccII	CGCG	2 cut(s)	303, 503
AciI	CCGC	3 cut(s)	301, 444, 524
AcoI	YGGCCR	1 cut(s)	371
AcsI	RAATTY	1 cut(s)	5
AcyI	GRCGYC	1 cut(s)	353
AfiI	CCNNNNNNNGG	2 cut(s)	421, 453
AgsI	TTSAA	1 cut(s)	85
Alw21I	GWGCWC	1 cut(s)	509
Alw26I	GTCTC	2 cut(s)	273, 404
Ama87I	CYCGRG	2 cut(s)	276, 381
AoxI	GGCC	3 cut(s)	271, 371, 403
ApoI	RAATTY	1 cut(s)	5
AseI	ATTAAT	1 cut(s)	233
AspLEI	GCGC	2 cut(s)	305, 355
AspS9I	GGNCC	3 cut(s)	272, 323, 378
AsuHPI	GGTGA	1 cut(s)	58
AvaI	CYCGRG	2 cut(s)	276, 381
AvaII	GGWCC	2 cut(s)	323, 378
BanI	GGYRCC	1 cut(s)	352
BbsI	GAAGAC	1 cut(s)	118
Bbv12I	GWGCWC	1 cut(s)	509
BceAI	ACGGC	1 cut(s)	340
BcoDI	GTCTC	2 cut(s)	273, 404
BfoI	RGCGCY	1 cut(s)	356
BglI	GCCNNNNNGGC	1 cut(s)	392
Bme18I	GGWCC	2 cut(s)	323, 378
BmeT110I	CYCGRG	2 cut(s)	276, 381
BmgT120I	GGNCC	3 cut(s)	272, 323, 378
BmiI	GGNNCC	5 cut(s)	274, 324, 325, 354, 380
BmrI	ACTGGG	1 cut(s)	444
BmsI	GCATC	1 cut(s)	593
BmuI	ACTGGG	1 cut(s)	444
BpiI	GAAGAC	1 cut(s)	118
BplI	GAGNNNNNCTC	2 cut(s)	270, 302
BpmI	CTGGAG	1 cut(s)	185
Bsa29I	ATCGAT	1 cut(s)	491
BsaHI	GRCGYC	1 cut(s)	353
BsaJI	CCNNGG	1 cut(s)	374
Bsc4I	CCNNNNNNNGG	2 cut(s)	421, 453
Bse118I	RCCGGY	1 cut(s)	391
Bse1I	ACTGG	1 cut(s)	450
BseCI	ATCGAT	1 cut(s)	491
BseDI	CCNNGG	1 cut(s)	374
BseGI	GGATG	1 cut(s)	565
BseLI	CCNNNNNNNGG	2 cut(s)	421, 453
BseMII	CTCAG	1 cut(s)	324
BseNI	ACTGG	1 cut(s)	450
BseRI	GAGGAG	4 cut(s)	287, 298, 401, 404
Bsh1236I	CGCG	2 cut(s)	303, 503
Bsh1285I	CGRYCG	1 cut(s)	331
BshFI	GGCC	3 cut(s)	273, 373, 405
BshNI	GGYRCC	1 cut(s)	352
BshVI	ATCGAT	1 cut(s)	491
BsiEI	CGRYCG	1 cut(s)	331
BsiHKAI	GWGCWC	1 cut(s)	509
BsiHKCI	CYCGRG	2 cut(s)	276, 381
BsiSI	CCGG	5 cut(s)	350, 370, 392, 510, 521
BslFI	GGGAC	1 cut(s)	309
BslI	CCNNNNNNNGG	2 cut(s)	421, 453
BsmAI	GTCTC	2 cut(s)	273, 404
BsmBI	CGTCTC	1 cut(s)	404
BsmFI	GGGAC	1 cut(s)	309
BsmI	GAATGC	1 cut(s)	265
BsnI	GGCC	3 cut(s)	273, 373, 405
BsoBI	CYCGRG	2 cut(s)	276, 381
Bsp1286I	GDGCHC	1 cut(s)	509
Bsp143I	GATC	1 cut(s)	458
BspACI	CCGC	3 cut(s)	301, 444, 524
BspANI	GGCC	3 cut(s)	273, 373, 405
BspCNI	CTCAG	1 cut(s)	323
BspDI	ATCGAT	1 cut(s)	491
BspFNI	CGCG	2 cut(s)	303, 503
BspLI	GGNNCC	5 cut(s)	274, 324, 325, 354, 380
BspT107I	GGYRCC	1 cut(s)	352
BsrFI	RCCGGY	1 cut(s)	391
BsrI	ACTGG	1 cut(s)	450
BssAI	RCCGGY	1 cut(s)	391
BssECI	CCNNGG	1 cut(s)	374
BssMI	GATC	1 cut(s)	458
BssNI	GRCGYC	1 cut(s)	353
Bst4CI	ACNGT	1 cut(s)	318
Bst6I	CTCTTC	3 cut(s)	136, 183, 293
BstACI	GRCGYC	1 cut(s)	353
BstC8I	GCNNGC	2 cut(s)	407, 505
BstDEI	CTNAG	1 cut(s)	310
BstDSI	CCRYGG	1 cut(s)	374
BstF5I	GGATG	1 cut(s)	565
BstFNI	CGCG	2 cut(s)	303, 503
BstH2I	RGCGCY	1 cut(s)	356
BstHHI	GCGC	2 cut(s)	305, 355
BstKTI	GATC	1 cut(s)	461
BstMAI	GTCTC	2 cut(s)	273, 404
BstMBI	GATC	1 cut(s)	458
BstMCI	CGRYCG	1 cut(s)	331
BstMWI	GCNNNNNNNGC	1 cut(s)	392
BstUI	CGCG	2 cut(s)	303, 503
BstV2I	GAAGAC	1 cut(s)	118
Bsu15I	ATCGAT	1 cut(s)	491
BsuRI	GGCC	3 cut(s)	273, 373, 405
BsuTUI	ATCGAT	1 cut(s)	491
BtgI	CCRYGG	1 cut(s)	374
BtsCI	GGATG	1 cut(s)	565
Cac8I	GCNNGC	2 cut(s)	407, 505
CfoI	GCGC	2 cut(s)	305, 355
Cfr10I	RCCGGY	1 cut(s)	391
Cfr13I	GGNCC	3 cut(s)	272, 323, 378
ClaI	ATCGAT	1 cut(s)	491
CseI	GACGC	1 cut(s)	484
CviAII	CATG	1 cut(s)	62
CviJI	RGCY	8 cut(s)	29, 273, 373, 386, 395, 405, 466, 579
CviKI_1	RGCY	8 cut(s)	29, 273, 373, 386, 395, 405, 466, 579
DdeI	CTNAG	1 cut(s)	310
DinI	GGCGCC	1 cut(s)	354
DpnI	GATC	1 cut(s)	460
DpnII	GATC	1 cut(s)	458
DrdI	GACNNNNNNGTC	1 cut(s)	396
DseDI	GACNNNNNNGTC	1 cut(s)	396
EaeI	YGGCCR	1 cut(s)	371
Eam1104I	CTCTTC	3 cut(s)	136, 183, 293
EarI	CTCTTC	3 cut(s)	136, 183, 293
EciI	GGCGGA	1 cut(s)	539
Eco47I	GGWCC	2 cut(s)	323, 378
Eco88I	CYCGRG	2 cut(s)	276, 381
EcoO109I	RGGNCCY	1 cut(s)	323
EgeI	GGCGCC	1 cut(s)	354
EheI	GGCGCC	1 cut(s)	354
Esp3I	CGTCTC	1 cut(s)	404
FaeI	CATG	1 cut(s)	65
FaiI	YATR	5 cut(s)	63, 211, 240, 573, 575
FaqI	GGGAC	1 cut(s)	309
FatI	CATG	1 cut(s)	61
FokI	GGATG	1 cut(s)	552
GlaI	GCGC	2 cut(s)	304, 354
GsuI	CTGGAG	1 cut(s)	185
HaeII	RGCGCY	1 cut(s)	356
HaeIII	GGCC	3 cut(s)	273, 373, 405
HapII	CCGG	5 cut(s)	350, 370, 392, 510, 521
HgaI	GACGC	1 cut(s)	484
HhaI	GCGC	2 cut(s)	305, 355
Hin1I	GRCGYC	1 cut(s)	353
Hin1II	CATG	1 cut(s)	65
Hin6I	GCGC	2 cut(s)	303, 353
HinP1I	GCGC	2 cut(s)	303, 353
HinfI	GANTC	3 cut(s)	281, 488, 545
HpaII	CCGG	5 cut(s)	350, 370, 392, 510, 521
HphI	GGTGA	1 cut(s)	58
Hpy188I	TCNGA	3 cut(s)	101, 313, 456
Hpy188III	TCNNGA	5 cut(s)	160, 202, 326, 485, 588
Hpy99I	CGWCG	2 cut(s)	322, 361
HpyCH4III	ACNGT	1 cut(s)	318
HpyCH4IV	ACGT	1 cut(s)	363
HpyCH4V	TGCA	2 cut(s)	265, 584
HpyF10VI	GCNNNNNNNGC	1 cut(s)	392
HpyF3I	CTNAG	1 cut(s)	310
HpySE526I	ACGT	1 cut(s)	363
Hsp92I	GRCGYC	1 cut(s)	353
Hsp92II	CATG	1 cut(s)	65
HspAI	GCGC	2 cut(s)	303, 353
KasI	GGCGCC	1 cut(s)	352
KflI	GGGWCCC	1 cut(s)	323
Kzo9I	GATC	1 cut(s)	458
LmnI	GCTCC	2 cut(s)	414, 512
LweI	GCATC	1 cut(s)	593
MaeII	ACGT	1 cut(s)	363
MaeIII	GTNAC	1 cut(s)	64
MalI	GATC	1 cut(s)	460
MboI	GATC	1 cut(s)	458
MboII	GAAGA	6 cut(s)	118, 123, 170, 188, 280, 523
MhlI	GDGCHC	1 cut(s)	509
MluCI	AATT	3 cut(s)	5, 20, 234
Mly113I	GGCGCC	1 cut(s)	353
MlyI	GAGTC	2 cut(s)	275, 539
MmeI	TCCRAC	1 cut(s)	434
MseI	TTAA	2 cut(s)	50, 233
MspI	CCGG	5 cut(s)	350, 370, 392, 510, 521
Mva1269I	GAATGC	1 cut(s)	265
MvnI	CGCG	2 cut(s)	303, 503
MwoI	GCNNNNNNNGC	1 cut(s)	392
NarI	GGCGCC	1 cut(s)	353
NdeII	GATC	1 cut(s)	458
NlaIII	CATG	1 cut(s)	65
NlaIV	GGNNCC	5 cut(s)	274, 324, 325, 354, 380
NmeAIII	GCCGAG	1 cut(s)	381
NmuCI	GTSAC	1 cut(s)	64
PctI	GAATGC	1 cut(s)	265
PfeI	GAWTC	1 cut(s)	488
PleI	GAGTC	2 cut(s)	275, 539
PluTI	GGCGCC	1 cut(s)	356
PpsI	GAGTC	2 cut(s)	275, 539
PpuMI	RGGWCCY	1 cut(s)	323
PshBI	ATTAAT	1 cut(s)	233
Psp5II	RGGWCCY	1 cut(s)	323
PspN4I	GGNNCC	5 cut(s)	274, 324, 325, 354, 380
PspPI	GGNCC	3 cut(s)	272, 323, 378
PspPPI	RGGWCCY	1 cut(s)	323
SaqAI	TTAA	2 cut(s)	50, 233
Sau3AI	GATC	1 cut(s)	458
Sau96I	GGNCC	3 cut(s)	272, 323, 378
SchI	GAGTC	2 cut(s)	275, 539
SduI	GDGCHC	1 cut(s)	509
SetI	ASST	2 cut(s)	71, 366
SfaNI	GCATC	1 cut(s)	593
SfoI	GGCGCC	1 cut(s)	354
SinI	GGWCC	2 cut(s)	323, 378
Sse9I	AATT	3 cut(s)	5, 20, 234
SsiI	CCGC	3 cut(s)	301, 444, 524
SspDI	GGCGCC	1 cut(s)	352
TaaI	ACNGT	1 cut(s)	318
TaiI	ACGT	1 cut(s)	366
TaqI	TCGA	3 cut(s)	359, 461, 491
TaqII	GACCGA	1 cut(s)	345
TasI	AATT	3 cut(s)	5, 20, 234
TfiI	GAWTC	1 cut(s)	488
Tru1I	TTAA	2 cut(s)	50, 233
Tru9I	TTAA	2 cut(s)	50, 233
TseFI	GTSAC	1 cut(s)	64
Tsp45I	GTSAC	1 cut(s)	64
TspDTI	ATGAA	3 cut(s)	17, 50, 227
TspGWI	ACGGA	1 cut(s)	391
VpaK11BI	GGWCC	2 cut(s)	323, 378
VspI	ATTAAT	1 cut(s)	233
XapI	RAATTY	1 cut(s)	5

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.