Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0006910

Physical Location & Seq

Genomic Coordinates Reverse (-)

79735268 .. 79736771

Gene Structure 1504 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000036367

Sequence Viewer

CDS Protein Promoter (2k)

Length: 492 bp

ATGGCGACGGCTGCTCGGTTTGTACTTGGAAAGCTGGGGATCAGAAGATCATCATCAGTAGTATTAGTAGCATACATAAACATAAATATACCAGCAGCAACTACTGGAATTTCTCTCAGTGTCTGTGCGGATAGTCCGGAGATTGTAGCAACTTGCAGTGGAAGAGTTCAATTTGAGAGAGAACTGAAGCCAATCGGTTCTGTTGTTGCCATTTTCCGGTTCCTAACAGCCACCACCAAGACGGCAGCAGGGCGCTCCGACGACAACCTCCTCTCTCTGCCCATTCTGGCAGTTAGGATCCCAAACATCGTCGTCTTCCTCTTCGACTCAGAGACTCTGATTCTACAGATCAGCGTGGACAGAGACCGCTGCTCGTCTCTAAGAAGCTGGGAACCGATGGTGGTGATGAGTTGGTGGCAGTGGCGTCGTCTCTATCTCTTCATGGAATCCTATGTCTTAGTAGGGACAGGTGATAGAGGCATCTTAGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

164

Amino Acids

18.06

Weight (kDa)

8.98

Isoelectric Point (pI)

49.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006910)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g05190 FvH4_2g05191
rosa_chinensis	RchiOBHm_Chr1g0337181 RchiOBHm_Chr2g0121011
rosa_laevigata	RLG00000014847 RLG00000014850 RLG00000023918 RLG00000036182 RLG00000036367
rosa_multiflora	Rmu_sc0000903.1_g000029 Rmu_sc0002973.1_g000006 Rmu_sc0004590.1_g000006 Rmu_sc0004976.1_g000015 Rmu_sc0005657.1_g000072 Rmu_sc0008105.1_g000001 Rmu_sc0009887.1_g000001 Rmu_sc0015317.1_g000001 Rmu_sc0027068.1_g000002 Rmu_sc0030281.1_g000001 Rmu_ssc0000259.1_g000046
rosa_roxburghii	Rroxscaffold_5G00333420 Rroxscaffold_7G00210090 Rroxscaffold_7G00210150
rosa_samantha	Rh3CG243900
rosa_wichuraiana	Rw6G006560 Rw6G006570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	136
AciI	CCGC	2 cut(s)	128, 367
AclWI	GGATC	3 cut(s)	47, 292, 305
AcsI	RAATTY	1 cut(s)	108
AcuI	CTGAAG	1 cut(s)	206
AcyI	GRCGYC	1 cut(s)	424
AfaI	GTAC	1 cut(s)	24
AfiI	CCNNNNNNNGG	1 cut(s)	216
AgsI	TTSAA	1 cut(s)	170
AluBI	AGCT	2 cut(s)	34, 387
AluI	AGCT	2 cut(s)	34, 387
Alw26I	GTCTC	4 cut(s)	326, 357, 381, 434
AlwI	GGATC	3 cut(s)	47, 292, 305
AlwNI	CAGNNNCTG	1 cut(s)	123
Aor13HI	TCCGGA	1 cut(s)	136
ApeKI	GCWGC	4 cut(s)	11, 95, 245, 369
ApoI	RAATTY	1 cut(s)	108
AspLEI	GCGC	1 cut(s)	255
AsuHPI	GGTGA	2 cut(s)	415, 482
BamHI	GGATCC	1 cut(s)	297
BbsI	GAAGAC	1 cut(s)	307
BbvI	GCAGC	3 cut(s)	107, 257, 356
BccI	CCATC	1 cut(s)	391
BceAI	ACGGC	2 cut(s)	24, 258
BcgI	CGANNNNNNTGC	2 cut(s)	407, 441
BcoDI	GTCTC	4 cut(s)	326, 357, 381, 434
BfmI	CTRYAG	1 cut(s)	344
BfoI	RGCGCY	1 cut(s)	256
BisI	GCNGC	4 cut(s)	12, 96, 246, 370
BlsI	GCNGC	4 cut(s)	13, 97, 247, 371
BmiI	GGNNCC	3 cut(s)	221, 299, 393
BpiI	GAAGAC	1 cut(s)	307
BsaBI	GATNNNNATC	1 cut(s)	52
BsaHI	GRCGYC	1 cut(s)	424
BsaI	GGTCTC	1 cut(s)	357
BsaWI	WCCGGW	2 cut(s)	136, 216
Bsc4I	CCNNNNNNNGG	1 cut(s)	216
Bse1I	ACTGG	1 cut(s)	109
Bse8I	GATNNNNATC	1 cut(s)	52
BseAI	TCCGGA	1 cut(s)	136
BseJI	GATNNNNATC	1 cut(s)	52
BseLI	CCNNNNNNNGG	1 cut(s)	216
BseMII	CTCAG	2 cut(s)	130, 342
BseNI	ACTGG	1 cut(s)	109
BseRI	GAGGAG	1 cut(s)	260
BseXI	GCAGC	3 cut(s)	107, 257, 356
BseYI	CCCAGC	2 cut(s)	34, 387
BsiSI	CCGG	2 cut(s)	137, 217
BslFI	GGGAC	1 cut(s)	478
BslI	CCNNNNNNNGG	1 cut(s)	216
BsmAI	GTCTC	4 cut(s)	326, 357, 381, 434
BsmBI	CGTCTC	2 cut(s)	381, 434
BsmFI	GGGAC	1 cut(s)	478
Bso31I	GGTCTC	1 cut(s)	357
Bsp13I	TCCGGA	1 cut(s)	136
Bsp143I	GATC	4 cut(s)	39, 47, 297, 348
BspACI	CCGC	2 cut(s)	128, 367
BspCNI	CTCAG	2 cut(s)	129, 341
BspEI	TCCGGA	1 cut(s)	136
BspLI	GGNNCC	3 cut(s)	221, 299, 393
BspPI	GGATC	3 cut(s)	47, 292, 305
BspTNI	GGTCTC	1 cut(s)	357
BsrI	ACTGG	1 cut(s)	109
BssMI	GATC	4 cut(s)	39, 47, 297, 348
BssNI	GRCGYC	1 cut(s)	424
Bst6I	CTCTTC	3 cut(s)	157, 326, 443
BstACI	GRCGYC	1 cut(s)	424
BstDEI	CTNAG	5 cut(s)	116, 328, 380, 457, 484
BstH2I	RGCGCY	1 cut(s)	256
BstHHI	GCGC	1 cut(s)	255
BstKTI	GATC	4 cut(s)	42, 50, 300, 351
BstMAI	GTCTC	4 cut(s)	326, 357, 381, 434
BstMBI	GATC	4 cut(s)	39, 47, 297, 348
BstMWI	GCNNNNNNNGC	1 cut(s)	11
BstSFI	CTRYAG	1 cut(s)	344
BstV1I	GCAGC	3 cut(s)	107, 257, 356
BstV2I	GAAGAC	1 cut(s)	307
BstX2I	RGATCY	1 cut(s)	297
BstYI	RGATCY	1 cut(s)	297
BtsI	GCAGTG	2 cut(s)	163, 425
BtsIMutI	CAGTG	3 cut(s)	124, 163, 425
CaiI	CAGNNNCTG	1 cut(s)	123
CfoI	GCGC	1 cut(s)	255
CseI	GACGC	1 cut(s)	413
Csp6I	GTAC	1 cut(s)	23
CviAII	CATG	1 cut(s)	442
CviJI	RGCY	5 cut(s)	11, 34, 190, 230, 387
CviKI_1	RGCY	5 cut(s)	11, 34, 190, 230, 387
CviQI	GTAC	1 cut(s)	23
DdeI	CTNAG	5 cut(s)	116, 328, 380, 457, 484
DpnI	GATC	4 cut(s)	41, 49, 299, 350
DpnII	GATC	4 cut(s)	39, 47, 297, 348
Eam1104I	CTCTTC	3 cut(s)	157, 326, 443
EarI	CTCTTC	3 cut(s)	157, 326, 443
Eco31I	GGTCTC	1 cut(s)	357
Eco57I	CTGAAG	1 cut(s)	206
Esp3I	CGTCTC	2 cut(s)	381, 434
FaeI	CATG	1 cut(s)	445
FaiI	YATR	6 cut(s)	73, 77, 83, 89, 443, 453
FaqI	GGGAC	1 cut(s)	478
FatI	CATG	1 cut(s)	441
Fnu4HI	GCNGC	4 cut(s)	12, 96, 246, 370
Fsp4HI	GCNGC	4 cut(s)	12, 96, 246, 370
GlaI	GCGC	1 cut(s)	254
GluI	GCNGC	4 cut(s)	12, 96, 246, 370
GsaI	CCCAGC	2 cut(s)	38, 391
HaeII	RGCGCY	1 cut(s)	256
HapII	CCGG	2 cut(s)	137, 217
HgaI	GACGC	1 cut(s)	413
HhaI	GCGC	1 cut(s)	255
Hin1I	GRCGYC	1 cut(s)	424
Hin1II	CATG	1 cut(s)	445
Hin6I	GCGC	1 cut(s)	253
HinP1I	GCGC	1 cut(s)	253
HinfI	GANTC	4 cut(s)	326, 334, 340, 446
HpaII	CCGG	2 cut(s)	137, 217
HphI	GGTGA	2 cut(s)	415, 482
Hpy166II	GTNNAC	1 cut(s)	358
Hpy188I	TCNGA	4 cut(s)	44, 259, 331, 339
Hpy188III	TCNNGA	1 cut(s)	137
Hpy8I	GTNNAC	1 cut(s)	358
Hpy99I	CGWCG	4 cut(s)	10, 263, 314, 429
HpyCH4V	TGCA	1 cut(s)	156
HpyF10VI	GCNNNNNNNGC	1 cut(s)	11
HpyF3I	CTNAG	5 cut(s)	116, 328, 380, 457, 484
Hsp92I	GRCGYC	1 cut(s)	424
Hsp92II	CATG	1 cut(s)	445
HspAI	GCGC	1 cut(s)	253
Kpn2I	TCCGGA	1 cut(s)	136
Kzo9I	GATC	4 cut(s)	39, 47, 297, 348
LmnI	GCTCC	1 cut(s)	260
LpnPI	CCDG	9 cut(s)	20, 90, 105, 150, 230, 234, 272, 373, 453
Lsp1109I	GCAGC	3 cut(s)	107, 257, 356
MalI	GATC	4 cut(s)	41, 49, 299, 350
MboI	GATC	4 cut(s)	39, 47, 297, 348
MboII	GAAGA	5 cut(s)	57, 174, 307, 313, 430
MflI	RGATCY	1 cut(s)	297
MluCI	AATT	2 cut(s)	108, 170
MlyI	GAGTC	2 cut(s)	320, 328
MmeI	TCCRAC	1 cut(s)	282
MnlI	CCTC	4 cut(s)	278, 281, 329, 470
MroI	TCCGGA	1 cut(s)	136
MspA1I	CMGCKG	1 cut(s)	369
MspI	CCGG	2 cut(s)	137, 217
MwoI	GCNNNNNNNGC	1 cut(s)	11
NdeII	GATC	4 cut(s)	39, 47, 297, 348
NlaIII	CATG	1 cut(s)	445
NlaIV	GGNNCC	3 cut(s)	221, 299, 393
PfeI	GAWTC	2 cut(s)	340, 446
PkrI	GCNGC	4 cut(s)	13, 97, 247, 371
PleI	GAGTC	2 cut(s)	320, 328
PpsI	GAGTC	2 cut(s)	320, 328
PspFI	CCCAGC	2 cut(s)	34, 387
PspN4I	GGNNCC	3 cut(s)	221, 299, 393
PstNI	CAGNNNCTG	1 cut(s)	123
PsuI	RGATCY	1 cut(s)	297
RsaI	GTAC	1 cut(s)	24
RsaNI	GTAC	1 cut(s)	23
SatI	GCNGC	4 cut(s)	12, 96, 246, 370
Sau3AI	GATC	4 cut(s)	39, 47, 297, 348
SchI	GAGTC	2 cut(s)	320, 328
SetI	ASST	4 cut(s)	36, 270, 389, 472
SfcI	CTRYAG	1 cut(s)	344
Sse9I	AATT	2 cut(s)	108, 170
SsiI	CCGC	2 cut(s)	128, 367
TaqI	TCGA	1 cut(s)	324
TasI	AATT	2 cut(s)	108, 170
TatI	WGTACW	1 cut(s)	22
TfiI	GAWTC	2 cut(s)	340, 446
TscAI	CASTG	3 cut(s)	124, 163, 425
TseI	GCWGC	4 cut(s)	11, 95, 245, 369
TspDTI	ATGAA	1 cut(s)	430
TspRI	CASTG	3 cut(s)	124, 163, 425
XapI	RAATTY	1 cut(s)	108

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.