Rmu_sc0008105.1_g000001

receptor-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0008105.1
OG0006910
Physical Location & Seq
Forward (+)
10921 .. 11658
738 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0008105.1_g000001.1.cds

Sequence Viewer

Length: 738 bp
atgttgtcaagcatagatatttcgaattgcagtttcactggatcagttcccaagtcgattgaaaacctcacagaattggctgacctggacatgtcagggaacagatttaatagtcccattagttctattcactgggaaacccttgttaatctggaaatcctcgctttgagccacaatcaactctatgggactattccttcatctgttgtttctcttcccatgctgaacatactagcactatctgacaatcagttctctggtcaagtccctgaattttccaatacctcttcgtacttccttgagattcttgacttaggtaacaacaatttggaaggacaaataccaacatctatcttcaatcttcaagggcttctgtttctcaatctttcttcaaacaacttcattagctttccttttaatagtgctcggctgcccagaaatcttccatcgattgatctttcccacaatagcttgctcattgattacaagggcaccaattcctccttccttcagattccctacttggcattggcttccaacaagttgagagcattcccagatttcttgagaaatcagtccacattatactacttggacctttcaaacaaccagattcaaggcgagatacctaattggattttgagtctcaaatctcttaattcccttgatctttctggtaactccttggtgactctagaagctcctcttccctttgtcacaaggaaaccggagcattaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0008150 GO:0009888 GO:0010073 GO:0032501 GO:0032502 GO:0048507 GO:0048856
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRRNT_2 LRR_1 LRR_6 LRR_8

Protein Analysis

245

Amino Acids

27.15

Weight (kDa)

4.73

Isoelectric Point (pI)

39.51

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 491
AclWI GGATC 1 cut(s) 49
AcsI RAATTY 1 cut(s) 272
AcuI CTGAAG 1 cut(s) 494
AfaI GTAC 1 cut(s) 293
AflIII ACRYGT 1 cut(s) 90
AgsI TTSAA 6 cut(s) 62, 358, 365, 393, 603, 617
AjnI CCWGG 1 cut(s) 84
AjuI GAANNNNNNNTTGG 2 cut(s) 488, 520
AluBI AGCT 3 cut(s) 408, 471, 701
AluI AGCT 3 cut(s) 408, 471, 701
Alw21I GWGCWC 1 cut(s) 427
Alw26I GTCTC 1 cut(s) 650
AlwI GGATC 1 cut(s) 49
ApeKI GCWGC 1 cut(s) 430
ApoI RAATTY 1 cut(s) 272
AspS9I GGNCC 1 cut(s) 595
AsuHPI GGTGA 1 cut(s) 700
AsuII TTCGAA 1 cut(s) 23
AvaII GGWCC 1 cut(s) 595
BaeGI GKGCMC 1 cut(s) 494
BanI GGYRCC 1 cut(s) 491
BarI GAAGNNNNNNTAC 2 cut(s) 324, 356
Bbv12I GWGCWC 1 cut(s) 427
BbvI GCAGC 1 cut(s) 417
BccI CCATC 1 cut(s) 454
BciT130I CCWGG 1 cut(s) 86
BcoDI GTCTC 1 cut(s) 650
BfaI CTAG 2 cut(s) 233, 695
BisI GCNGC 1 cut(s) 431
BlsI GCNGC 1 cut(s) 432
Bme1390I CCNGG 1 cut(s) 86
Bme18I GGWCC 1 cut(s) 595
BmgT120I GGNCC 1 cut(s) 595
BmiI GGNNCC 1 cut(s) 493
BmrFI CCNGG 1 cut(s) 86
BmrI ACTGGG 1 cut(s) 142
BmuI ACTGGG 1 cut(s) 142
Bpu14I TTCGAA 1 cut(s) 23
BpuEI CTTGAG 2 cut(s) 320, 586
Bsa29I ATCGAT 1 cut(s) 449
BsaJI CCNNGG 1 cut(s) 684
BsaWI WCCGGW 1 cut(s) 727
Bse1I ACTGG 2 cut(s) 43, 137
BseBI CCWGG 1 cut(s) 86
BseCI ATCGAT 1 cut(s) 449
BseDI CCNNGG 1 cut(s) 684
BseNI ACTGG 2 cut(s) 43, 137
BseRI GAGGAG 1 cut(s) 693
BseSI GKGCMC 1 cut(s) 494
BseXI GCAGC 1 cut(s) 417
BshNI GGYRCC 1 cut(s) 491
BshVI ATCGAT 1 cut(s) 449
BsiHKAI GWGCWC 1 cut(s) 427
BsiSI CCGG 1 cut(s) 728
BslFI GGGAC 3 cut(s) 99, 202, 251
BsmAI GTCTC 1 cut(s) 650
BsmFI GGGAC 3 cut(s) 99, 202, 251
BsmI GAATGC 1 cut(s) 551
Bsp119I TTCGAA 1 cut(s) 23
Bsp1286I GDGCHC 2 cut(s) 427, 494
Bsp143I GATC 3 cut(s) 41, 454, 667
BspDI ATCGAT 1 cut(s) 449
BspLI GGNNCC 1 cut(s) 493
BspPI GGATC 1 cut(s) 49
BspT104I TTCGAA 1 cut(s) 23
BspT107I GGYRCC 1 cut(s) 491
BsrI ACTGG 2 cut(s) 43, 137
BssECI CCNNGG 1 cut(s) 684
BssMI GATC 3 cut(s) 41, 454, 667
BssT1I CCWWGG 1 cut(s) 684
Bst2UI CCWGG 1 cut(s) 86
Bst6I CTCTTC 3 cut(s) 219, 292, 711
BstBI TTCGAA 1 cut(s) 23
BstC8I GCNNGC 1 cut(s) 473
BstDEI CTNAG 1 cut(s) 313
BstKTI GATC 3 cut(s) 44, 457, 670
BstMAI GTCTC 1 cut(s) 650
BstMBI GATC 3 cut(s) 41, 454, 667
BstNI CCWGG 1 cut(s) 86
BstNSI RCATGY 1 cut(s) 94
BstSCI CCNGG 1 cut(s) 84
BstSLI GKGCMC 1 cut(s) 494
BstV1I GCAGC 1 cut(s) 417
Bsu15I ATCGAT 1 cut(s) 449
BsuTUI ATCGAT 1 cut(s) 449
BtsIMutI CAGTG 2 cut(s) 36, 130
Cac8I GCNNGC 1 cut(s) 473
Cfr13I GGNCC 1 cut(s) 595
ClaI ATCGAT 1 cut(s) 449
Csp6I GTAC 1 cut(s) 292
CviAII CATG 2 cut(s) 91, 220
CviJI RGCY 8 cut(s) 80, 171, 370, 408, 430, 471, 533, 701
CviKI_1 RGCY 8 cut(s) 80, 171, 370, 408, 430, 471, 533, 701
CviQI GTAC 1 cut(s) 292
DdeI CTNAG 1 cut(s) 313
DpnI GATC 3 cut(s) 43, 456, 669
DpnII GATC 3 cut(s) 41, 454, 667
Eam1104I CTCTTC 3 cut(s) 219, 292, 711
EarI CTCTTC 3 cut(s) 219, 292, 711
Eco130I CCWWGG 1 cut(s) 684
Eco47I GGWCC 1 cut(s) 595
Eco57I CTGAAG 1 cut(s) 494
EcoRII CCWGG 1 cut(s) 84
EcoT14I CCWWGG 1 cut(s) 684
ErhI CCWWGG 1 cut(s) 684
FaeI CATG 2 cut(s) 94, 223
FaiI YATR 6 cut(s) 14, 92, 186, 221, 230, 586
FalI AAGNNNNNCTT 2 cut(s) 690, 722
FaqI GGGAC 3 cut(s) 99, 202, 251
FatI CATG 2 cut(s) 90, 219
Fnu4HI GCNGC 1 cut(s) 431
Fsp4HI GCNGC 1 cut(s) 431
FspBI CTAG 2 cut(s) 233, 695
GluI GCNGC 1 cut(s) 431
HapII CCGG 1 cut(s) 728
Hin1II CATG 2 cut(s) 94, 223
HinfI GANTC 5 cut(s) 304, 514, 613, 643, 691
HpaII CCGG 1 cut(s) 728
HphI GGTGA 1 cut(s) 700
Hpy166II GTNNAC 1 cut(s) 579
Hpy188I TCNGA 2 cut(s) 244, 513
Hpy188III TCNNGA 4 cut(s) 152, 308, 565, 695
Hpy8I GTNNAC 1 cut(s) 579
HpyAV CCTTC 4 cut(s) 207, 326, 514, 518
HpyCH4V TGCA 1 cut(s) 30
HpyF3I CTNAG 1 cut(s) 313
Hsp92II CATG 2 cut(s) 94, 223
Kzo9I GATC 3 cut(s) 41, 454, 667
LmnI GCTCC 2 cut(s) 706, 730
Lsp1109I GCAGC 1 cut(s) 417
MaeI CTAG 2 cut(s) 233, 695
MaeIII GTNAC 4 cut(s) 317, 677, 688, 715
MalI GATC 3 cut(s) 43, 456, 669
MboI GATC 3 cut(s) 41, 454, 667
MboII GAAGA 7 cut(s) 206, 279, 346, 353, 381, 434, 698
MhlI GDGCHC 2 cut(s) 427, 494
MluCI AATT 7 cut(s) 25, 74, 272, 325, 496, 631, 658
MlyI GAGTC 2 cut(s) 652, 685
MmeI TCCRAC 1 cut(s) 561
MnlI CCTC 5 cut(s) 77, 170, 295, 511, 714
MseI TTAA 5 cut(s) 108, 147, 417, 657, 736
MspI CCGG 1 cut(s) 728
MspR9I CCNGG 1 cut(s) 86
Mva1269I GAATGC 1 cut(s) 551
MvaI CCWGG 1 cut(s) 86
NdeII GATC 3 cut(s) 41, 454, 667
NlaIII CATG 2 cut(s) 94, 223
NlaIV GGNNCC 1 cut(s) 493
NmeAIII GCCGAG 1 cut(s) 406
NmuCI GTSAC 2 cut(s) 688, 715
NspI RCATGY 1 cut(s) 94
NspV TTCGAA 1 cut(s) 23
PciI ACATGT 1 cut(s) 90
PctI GAATGC 1 cut(s) 551
PfeI GAWTC 3 cut(s) 304, 514, 613
PkrI GCNGC 1 cut(s) 432
PleI GAGTC 2 cut(s) 651, 685
PpsI GAGTC 2 cut(s) 651, 685
PscI ACATGT 1 cut(s) 90
Psp6I CCWGG 1 cut(s) 84
PspGI CCWGG 1 cut(s) 84
PspN4I GGNNCC 1 cut(s) 493
PspPI GGNCC 1 cut(s) 595
RsaI GTAC 1 cut(s) 293
RsaNI GTAC 1 cut(s) 292
SaqAI TTAA 5 cut(s) 108, 147, 417, 657, 736
SatI GCNGC 1 cut(s) 431
Sau3AI GATC 3 cut(s) 41, 454, 667
Sau96I GGNCC 1 cut(s) 595
SchI GAGTC 2 cut(s) 652, 685
ScrFI CCNGG 1 cut(s) 86
SduI GDGCHC 2 cut(s) 427, 494
SetI ASST 9 cut(s) 69, 87, 287, 319, 410, 473, 600, 631, 703
SfuI TTCGAA 1 cut(s) 23
SinI GGWCC 1 cut(s) 595
SmlI CTYRAG 2 cut(s) 299, 565
SmoI CTYRAG 2 cut(s) 299, 565
Sse9I AATT 7 cut(s) 25, 74, 272, 325, 496, 631, 658
SspMI CTAG 2 cut(s) 233, 695
StyD4I CCNGG 1 cut(s) 84
StyI CCWWGG 1 cut(s) 684
TaqI TCGA 3 cut(s) 23, 56, 449
TasI AATT 7 cut(s) 25, 74, 272, 325, 496, 631, 658
TfiI GAWTC 3 cut(s) 304, 514, 613
Tru1I TTAA 5 cut(s) 108, 147, 417, 657, 736
Tru9I TTAA 5 cut(s) 108, 147, 417, 657, 736
TscAI CASTG 2 cut(s) 43, 137
TseFI GTSAC 2 cut(s) 688, 715
TseI GCWGC 1 cut(s) 430
Tsp45I GTSAC 2 cut(s) 688, 715
TspDTI ATGAA 2 cut(s) 189, 391
TspRI CASTG 2 cut(s) 43, 137
VpaK11BI GGWCC 1 cut(s) 595
XapI RAATTY 1 cut(s) 272
XbaI TCTAGA 1 cut(s) 694
XceI RCATGY 1 cut(s) 94
XspI CTAG 2 cut(s) 233, 695
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.