Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0006910

Physical Location & Seq

Genomic Coordinates Forward (+)

58415494 .. 58418802

Gene Structure 3309 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000014850

Sequence Viewer

CDS Protein Promoter (2k)

Length: 840 bp

ATGACTTTGCCCGATGATGCATCTAATAACAAAACCCTAACCTTCTGGCTTCGTCGTTCTGTTAATACCACTGAAGCTGATGAGGAGACAATTTCAGATGCCAGTCTTCAGGGTAGTGATGCTTCCCTTCATGGCAGTGATGCTACTGGTACTGATGCCACTTGTCAGGGCAGTGATGCTTCTCTTCTTGGCAGTAATGCTTCCCCTCTTGGTGGTGATGCTACTGATACTGGTACGGCCAGTTTTCCTCACACTGAGGCCACTGCAAGGCAGTACGTTGAGGATGATACTACTATTGAAGGTGACAAATCTAGTGGAGATGATTGTAGTCATCCTCCTGTTGCAGATAATACTTCTGTTCCAGCCACTTCTTGTGCTCCTGCTACTTCTACCATTCCTTGTGCTGACCCCACTGCCAGTGTCACCCAACTTCCTTATGCAAGGCTGTACCGGCAGTATCTCGATGATGATACAATTGTTGGAGGTGATGGTACTACTGCAGATACTTCTATTGCAGCGGGTAGTGATACTAGTGCTTCTCTTCCCCGTGCTGGTGACGAAACCCTTGATAATGTCACTGCAACTCCTGCACTAGGTGATGCTACTGCTTCAGCCACCAGTCCTCAAGTTGCCACAAGTGTTGTCAGTGGGGCCCGTTCGTGGTTCGGTGTAGCACCAATGACATTTGCACTAGTAGCTGTCTTAGCGCTGTTGCTTTCCTCAGCATATTACAGTGCTCATGCTTCCATCAGTGACCAGCTTGGGGACTCGGTCATGCTGTTGATTGTGTTAAAGCATATGTGCGTTAACGTGTTAGGCGCCGTGTGCATTCAGGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

280

Amino Acids

28.39

Weight (kDa)

4.05

Isoelectric Point (pI)

29.22

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006910)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g05190 FvH4_2g05191
rosa_chinensis	RchiOBHm_Chr1g0337181 RchiOBHm_Chr2g0121011
rosa_laevigata	RLG00000014847 RLG00000014850 RLG00000023918 RLG00000036182 RLG00000036367
rosa_multiflora	Rmu_sc0000903.1_g000029 Rmu_sc0002973.1_g000006 Rmu_sc0004590.1_g000006 Rmu_sc0004976.1_g000015 Rmu_sc0005657.1_g000072 Rmu_sc0008105.1_g000001 Rmu_sc0009887.1_g000001 Rmu_sc0015317.1_g000001 Rmu_sc0027068.1_g000002 Rmu_sc0030281.1_g000001 Rmu_ssc0000259.1_g000046
rosa_roxburghii	Rroxscaffold_5G00333420 Rroxscaffold_7G00210090 Rroxscaffold_7G00210150
rosa_samantha	Rh3CG243900
rosa_wichuraiana	Rw6G006560 Rw6G006570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	818
AciI	CCGC	1 cut(s)	518
AcoI	YGGCCR	1 cut(s)	237
AcuI	CTGAAG	3 cut(s)	92, 93, 594
AcyI	GRCGYC	1 cut(s)	819
AdeI	CACNNNGTG	1 cut(s)	596
AfaI	GTAC	5 cut(s)	151, 235, 275, 449, 493
AfeI	AGCGCT	1 cut(s)	708
AfiI	CCNNNNNNNGG	6 cut(s)	212, 267, 551, 593, 660, 763
AflIII	ACRYGT	1 cut(s)	810
AgsI	TTSAA	1 cut(s)	299
AhlI	ACTAGT	2 cut(s)	530, 691
AluBI	AGCT	3 cut(s)	77, 698, 760
AluI	AGCT	3 cut(s)	77, 698, 760
Alw21I	GWGCWC	2 cut(s)	379, 739
Alw26I	GTCTC	1 cut(s)	80
Aor51HI	AGCGCT	1 cut(s)	708
AoxI	GGCC	3 cut(s)	237, 258, 651
ApaI	GGGCCC	1 cut(s)	655
ApeKI	GCWGC	1 cut(s)	515
AspLEI	GCGC	2 cut(s)	709, 821
AspS9I	GGNCC	2 cut(s)	651, 652
AsuHPI	GGTGA	6 cut(s)	227, 314, 415, 497, 566, 608
BaeGI	GKGCMC	1 cut(s)	655
BaeI	ACNNNNGTAYC	2 cut(s)	462, 495
BanI	GGYRCC	1 cut(s)	818
BanII	GRGCYC	1 cut(s)	655
BarI	GAAGNNNNNNTAC	2 cut(s)	106, 138
BbsI	GAAGAC	1 cut(s)	98
Bbv12I	GWGCWC	2 cut(s)	379, 739
BbvCI	CCTCAGC	1 cut(s)	721
BbvI	GCAGC	1 cut(s)	527
BccI	CCATC	2 cut(s)	482, 755
BceAI	ACGGC	2 cut(s)	252, 806
BcoDI	GTCTC	1 cut(s)	80
BcuI	ACTAGT	2 cut(s)	530, 691
BfaI	CTAG	4 cut(s)	312, 531, 593, 692
BfmI	CTRYAG	1 cut(s)	498
BfoI	RGCGCY	2 cut(s)	710, 822
BisI	GCNGC	1 cut(s)	516
BlsI	GCNGC	1 cut(s)	517
BmgT120I	GGNCC	2 cut(s)	651, 652
BmiI	GGNNCC	3 cut(s)	652, 653, 820
BmsI	GCATC	9 cut(s)	7, 29, 88, 109, 130, 145, 166, 208, 589
BpiI	GAAGAC	1 cut(s)	98
Bpu10I	CCTNAGC	1 cut(s)	721
BpuEI	CTTGAG	1 cut(s)	609
BsaHI	GRCGYC	1 cut(s)	819
BsaXI	ACNNNNNCTCC	2 cut(s)	568, 598
Bsc4I	CCNNNNNNNGG	6 cut(s)	212, 267, 551, 593, 660, 763
Bse118I	RCCGGY	1 cut(s)	450
Bse1I	ACTGG	6 cut(s)	102, 151, 235, 240, 417, 618
BseGI	GGATG	2 cut(s)	289, 331
BseLI	CCNNNNNNNGG	6 cut(s)	212, 267, 551, 593, 660, 763
BseMII	CTCAG	2 cut(s)	246, 735
BseNI	ACTGG	6 cut(s)	102, 151, 235, 240, 417, 618
BseRI	GAGGAG	1 cut(s)	98
BseSI	GKGCMC	1 cut(s)	655
BseXI	GCAGC	1 cut(s)	527
BsgI	GTGCAG	1 cut(s)	573
BshFI	GGCC	3 cut(s)	239, 260, 653
BshNI	GGYRCC	1 cut(s)	818
BsiHKAI	GWGCWC	2 cut(s)	379, 739
BsiSI	CCGG	1 cut(s)	451
BslFI	GGGAC	1 cut(s)	779
BslI	CCNNNNNNNGG	6 cut(s)	212, 267, 551, 593, 660, 763
BsmAI	GTCTC	1 cut(s)	80
BsmFI	GGGAC	1 cut(s)	779
BsmI	GAATGC	1 cut(s)	828
BsnI	GGCC	3 cut(s)	239, 260, 653
Bsp120I	GGGCCC	1 cut(s)	651
Bsp1286I	GDGCHC	3 cut(s)	379, 655, 739
BspACI	CCGC	1 cut(s)	518
BspANI	GGCC	3 cut(s)	239, 260, 653
BspCNI	CTCAG	2 cut(s)	247, 734
BspLI	GGNNCC	3 cut(s)	652, 653, 820
BspMAI	CTGCAG	1 cut(s)	502
BspT107I	GGYRCC	1 cut(s)	818
BsrFI	RCCGGY	1 cut(s)	450
BsrI	ACTGG	6 cut(s)	102, 151, 235, 240, 417, 618
BssAI	RCCGGY	1 cut(s)	450
BssNI	GRCGYC	1 cut(s)	819
Bst4CI	ACNGT	1 cut(s)	734
Bst6I	CTCTTC	2 cut(s)	189, 546
BstACI	GRCGYC	1 cut(s)	819
BstAPI	GCANNNNNTGC	1 cut(s)	587
BstDEI	CTNAG	3 cut(s)	255, 703, 721
BstENI	CCTNNNNNAGG	1 cut(s)	591
BstF5I	GGATG	2 cut(s)	289, 331
BstH2I	RGCGCY	2 cut(s)	710, 822
BstHHI	GCGC	2 cut(s)	709, 821
BstMAI	GTCTC	1 cut(s)	80
BstMWI	GCNNNNNNNGC	5 cut(s)	451, 587, 695, 704, 825
BstSFI	CTRYAG	1 cut(s)	498
BstSLI	GKGCMC	1 cut(s)	655
BstV1I	GCAGC	1 cut(s)	527
BstV2I	GAAGAC	1 cut(s)	98
BsuRI	GGCC	3 cut(s)	239, 260, 653
BtsCI	GGATG	2 cut(s)	289, 331
BtsI	GCAGTG	5 cut(s)	142, 178, 261, 411, 576
CfoI	GCGC	2 cut(s)	709, 821
Cfr10I	RCCGGY	1 cut(s)	450
Cfr13I	GGNCC	2 cut(s)	651, 652
Csp6I	GTAC	5 cut(s)	150, 234, 274, 448, 492
CspCI	CAANNNNNGTGG	4 cut(s)	295, 330, 622, 657
CviAII	CATG	3 cut(s)	131, 740, 775
CviQI	GTAC	5 cut(s)	150, 234, 274, 448, 492
DdeI	CTNAG	3 cut(s)	255, 703, 721
DinI	GGCGCC	1 cut(s)	820
DraIII	CACNNNGTG	1 cut(s)	596
EaeI	YGGCCR	1 cut(s)	237
Eam1104I	CTCTTC	2 cut(s)	189, 546
EarI	CTCTTC	2 cut(s)	189, 546
Eco24I	GRGCYC	1 cut(s)	655
Eco47III	AGCGCT	1 cut(s)	708
Eco57I	CTGAAG	3 cut(s)	92, 93, 594
EcoNI	CCTNNNNNAGG	1 cut(s)	591
EcoO109I	RGGNCCY	1 cut(s)	651
EcoT22I	ATGCAT	1 cut(s)	22
EcoT38I	GRGCYC	1 cut(s)	655
EgeI	GGCGCC	1 cut(s)	820
EheI	GGCGCC	1 cut(s)	820
FaeI	CATG	3 cut(s)	134, 743, 778
FaiI	YATR	7 cut(s)	132, 438, 727, 741, 776, 798, 800
FaqI	GGGAC	1 cut(s)	779
FatI	CATG	3 cut(s)	130, 739, 774
FauI	CCCGC	1 cut(s)	511
FauNDI	CATATG	1 cut(s)	798
Fnu4HI	GCNGC	1 cut(s)	516
FokI	GGATG	2 cut(s)	296, 318
FriOI	GRGCYC	1 cut(s)	655
Fsp4HI	GCNGC	1 cut(s)	516
FspBI	CTAG	4 cut(s)	312, 531, 593, 692
GlaI	GCGC	2 cut(s)	708, 820
GluI	GCNGC	1 cut(s)	516
HaeII	RGCGCY	2 cut(s)	710, 822
HaeIII	GGCC	3 cut(s)	239, 260, 653
HapII	CCGG	1 cut(s)	451
HhaI	GCGC	2 cut(s)	709, 821
Hin1I	GRCGYC	1 cut(s)	819
Hin1II	CATG	3 cut(s)	134, 743, 778
Hin6I	GCGC	2 cut(s)	707, 819
HinP1I	GCGC	2 cut(s)	707, 819
HincII	GTYRAC	1 cut(s)	808
HindII	GTYRAC	1 cut(s)	808
HinfI	GANTC	1 cut(s)	767
HpaI	GTTAAC	1 cut(s)	808
HpaII	CCGG	1 cut(s)	451
HphI	GGTGA	6 cut(s)	227, 314, 415, 497, 566, 608
Hpy166II	GTNNAC	1 cut(s)	808
Hpy188I	TCNGA	1 cut(s)	97
Hpy188III	TCNNGA	1 cut(s)	461
Hpy8I	GTNNAC	1 cut(s)	808
Hpy99I	CGWCG	1 cut(s)	57
HpyAV	CCTTC	3 cut(s)	52, 137, 293
HpyCH4III	ACNGT	1 cut(s)	734
HpyCH4IV	ACGT	2 cut(s)	276, 810
HpyF10VI	GCNNNNNNNGC	5 cut(s)	451, 587, 695, 704, 825
HpyF3I	CTNAG	3 cut(s)	255, 703, 721
HpySE526I	ACGT	2 cut(s)	276, 810
Hsp92I	GRCGYC	1 cut(s)	819
Hsp92II	CATG	3 cut(s)	134, 743, 778
HspAI	GCGC	2 cut(s)	707, 819
KasI	GGCGCC	1 cut(s)	818
KspAI	GTTAAC	1 cut(s)	808
LmnI	GCTCC	1 cut(s)	382
Lsp1109I	GCAGC	1 cut(s)	527
LweI	GCATC	9 cut(s)	7, 29, 88, 109, 130, 145, 166, 208, 589
MaeI	CTAG	4 cut(s)	312, 531, 593, 692
MaeII	ACGT	2 cut(s)	276, 810
MaeIII	GTNAC	5 cut(s)	302, 421, 554, 574, 752
MboII	GAAGA	3 cut(s)	98, 176, 533
MfeI	CAATTG	1 cut(s)	474
MhlI	GDGCHC	3 cut(s)	379, 655, 739
MluCI	AATT	2 cut(s)	90, 474
Mly113I	GGCGCC	1 cut(s)	819
MlyI	GAGTC	1 cut(s)	761
MmeI	TCCRAC	1 cut(s)	460
MnlI	CCTC	9 cut(s)	76, 216, 250, 258, 274, 345, 476, 633, 730
Mph1103I	ATGCAT	1 cut(s)	22
MseI	TTAA	3 cut(s)	63, 791, 807
MslI	CAYNNNNRTG	1 cut(s)	135
MspA1I	CMGCKG	1 cut(s)	518
MspI	CCGG	1 cut(s)	451
MunI	CAATTG	1 cut(s)	474
Mva1269I	GAATGC	1 cut(s)	828
MwoI	GCNNNNNNNGC	5 cut(s)	451, 587, 695, 704, 825
NarI	GGCGCC	1 cut(s)	819
NdeI	CATATG	1 cut(s)	798
NlaIII	CATG	3 cut(s)	134, 743, 778
NlaIV	GGNNCC	3 cut(s)	652, 653, 820
NmuCI	GTSAC	5 cut(s)	302, 421, 554, 574, 752
NsiI	ATGCAT	1 cut(s)	22
PctI	GAATGC	1 cut(s)	828
PflFI	GACNNNGTC	1 cut(s)	770
PkrI	GCNGC	1 cut(s)	517
PleI	GAGTC	1 cut(s)	761
PluTI	GGCGCC	1 cut(s)	822
PpsI	GAGTC	1 cut(s)	761
PspN4I	GGNNCC	3 cut(s)	652, 653, 820
PspOMI	GGGCCC	1 cut(s)	651
PspPI	GGNCC	2 cut(s)	651, 652
PstI	CTGCAG	1 cut(s)	502
PsyI	GACNNNGTC	1 cut(s)	770
RsaI	GTAC	5 cut(s)	151, 235, 275, 449, 493
RsaNI	GTAC	5 cut(s)	150, 234, 274, 448, 492
RseI	CAYNNNNRTG	1 cut(s)	135
SaqAI	TTAA	3 cut(s)	63, 791, 807
SatI	GCNGC	1 cut(s)	516
Sau96I	GGNCC	2 cut(s)	651, 652
SchI	GAGTC	1 cut(s)	761
SduI	GDGCHC	3 cut(s)	379, 655, 739
SfaNI	GCATC	9 cut(s)	7, 29, 88, 109, 130, 145, 166, 208, 589
SfcI	CTRYAG	1 cut(s)	498
SfoI	GGCGCC	1 cut(s)	820
SmiMI	CAYNNNNRTG	1 cut(s)	135
SmlI	CTYRAG	1 cut(s)	624
SmoI	CTYRAG	1 cut(s)	624
SpeI	ACTAGT	2 cut(s)	530, 691
Sse9I	AATT	2 cut(s)	90, 474
SsiI	CCGC	1 cut(s)	518
SspDI	GGCGCC	1 cut(s)	818
SspMI	CTAG	4 cut(s)	312, 531, 593, 692
TaaI	ACNGT	1 cut(s)	734
TaiI	ACGT	2 cut(s)	279, 813
TaqI	TCGA	1 cut(s)	462
TaqII	GACCGA	1 cut(s)	760
TasI	AATT	2 cut(s)	90, 474
Tru1I	TTAA	3 cut(s)	63, 791, 807
Tru9I	TTAA	3 cut(s)	63, 791, 807
TseFI	GTSAC	5 cut(s)	302, 421, 554, 574, 752
TseI	GCWGC	1 cut(s)	515
Tsp45I	GTSAC	5 cut(s)	302, 421, 554, 574, 752
TspDTI	ATGAA	1 cut(s)	119
Tth111I	GACNNNGTC	1 cut(s)	770
XagI	CCTNNNNNAGG	1 cut(s)	591
XspI	CTAG	4 cut(s)	312, 531, 593, 692
Zsp2I	ATGCAT	1 cut(s)	22

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.