Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0006910

Physical Location & Seq

Genomic Coordinates Forward (+)

77121921 .. 77123385

Gene Structure 1465 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000036182

Sequence Viewer

CDS Protein Promoter (2k)

Length: 390 bp

ATGTTGTTGCCAGTGACCCCATGTGCCAACGTGGACTATGAATTGGTCAGACTAATCGGCTTGCCAAGGATTAGTAAGCAAATTGAAGCCAATCAGTTCGTTGTTGCCATTTTCCAGTTCCTAACAGCCACCACCAAGATTGCAGCAGGGTGCTCCGACGACAACCTCCTCTCTCTGCCCGTTCTGGCCGTTAGGATCCTAAACGTCGTCGTCTTCCTCTTCGACTCAGAGACTCAGATCCTACAGATCAGCGTGGACAGAGATTGCTGCTCGTCTCTAAGAAGCTGGGAACCGATGGTGGTGATGAATCAGCGGCAGCGGCGTCGTCTCTATCTTTTCGAGAAATCTTATGTCTCAGTAGGGGCAGGTGACAGAGGCATCTTAGACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

130

Amino Acids

14.51

Weight (kDa)

6.23

Isoelectric Point (pI)

39.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006910)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g05190 FvH4_2g05191
rosa_chinensis	RchiOBHm_Chr1g0337181 RchiOBHm_Chr2g0121011
rosa_laevigata	RLG00000014847 RLG00000014850 RLG00000023918 RLG00000036182 RLG00000036367
rosa_multiflora	Rmu_sc0000903.1_g000029 Rmu_sc0002973.1_g000006 Rmu_sc0004590.1_g000006 Rmu_sc0004976.1_g000015 Rmu_sc0005657.1_g000072 Rmu_sc0008105.1_g000001 Rmu_sc0009887.1_g000001 Rmu_sc0015317.1_g000001 Rmu_sc0027068.1_g000002 Rmu_sc0030281.1_g000001 Rmu_ssc0000259.1_g000046
rosa_roxburghii	Rroxscaffold_5G00333420 Rroxscaffold_7G00210090 Rroxscaffold_7G00210150
rosa_samantha	Rh3CG243900
rosa_wichuraiana	Rw6G006560 Rw6G006570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	356
Acc36I	ACCTGC	1 cut(s)	356
AciI	CCGC	2 cut(s)	313, 319
AclWI	GGATC	3 cut(s)	190, 203, 232
AcoI	YGGCCR	1 cut(s)	186
AcyI	GRCGYC	1 cut(s)	322
AgsI	TTSAA	1 cut(s)	86
AluBI	AGCT	1 cut(s)	285
AluI	AGCT	1 cut(s)	285
Alw21I	GWGCWC	1 cut(s)	155
Alw26I	GTCTC	4 cut(s)	224, 279, 332, 358
AlwI	GGATC	3 cut(s)	190, 203, 232
AoxI	GGCC	1 cut(s)	186
ApeKI	GCWGC	3 cut(s)	143, 267, 316
AsuHPI	GGTGA	2 cut(s)	313, 380
BamHI	GGATCC	1 cut(s)	195
BbsI	GAAGAC	1 cut(s)	205
Bbv12I	GWGCWC	1 cut(s)	155
BbvI	GCAGC	3 cut(s)	155, 254, 328
BccI	CCATC	1 cut(s)	289
BceAI	ACGGC	1 cut(s)	173
BcgI	CGANNNNNNTGC	2 cut(s)	305, 339
BcoDI	GTCTC	4 cut(s)	224, 279, 332, 358
BfmI	CTRYAG	1 cut(s)	242
BfuAI	ACCTGC	1 cut(s)	356
BisI	GCNGC	5 cut(s)	144, 268, 314, 317, 320
BlsI	GCNGC	5 cut(s)	145, 269, 315, 318, 321
BmiI	GGNNCC	2 cut(s)	197, 291
BpiI	GAAGAC	1 cut(s)	205
BsaHI	GRCGYC	1 cut(s)	322
BsaJI	CCNNGG	1 cut(s)	65
Bse1I	ACTGG	2 cut(s)	11, 115
BseDI	CCNNGG	1 cut(s)	65
BseMII	CTCAG	3 cut(s)	240, 248, 369
BseNI	ACTGG	2 cut(s)	11, 115
BseRI	GAGGAG	1 cut(s)	158
BseXI	GCAGC	3 cut(s)	155, 254, 328
BseYI	CCCAGC	1 cut(s)	285
BshFI	GGCC	1 cut(s)	188
BsiHKAI	GWGCWC	1 cut(s)	155
BsmAI	GTCTC	4 cut(s)	224, 279, 332, 358
BsmBI	CGTCTC	2 cut(s)	279, 332
BsnI	GGCC	1 cut(s)	188
Bsp1286I	GDGCHC	1 cut(s)	155
Bsp143I	GATC	3 cut(s)	195, 237, 246
BspACI	CCGC	2 cut(s)	313, 319
BspANI	GGCC	1 cut(s)	188
BspCNI	CTCAG	3 cut(s)	239, 247, 368
BspLI	GGNNCC	2 cut(s)	197, 291
BspMI	ACCTGC	1 cut(s)	356
BspPI	GGATC	3 cut(s)	190, 203, 232
BsrI	ACTGG	2 cut(s)	11, 115
BssECI	CCNNGG	1 cut(s)	65
BssMI	GATC	3 cut(s)	195, 237, 246
BssNI	GRCGYC	1 cut(s)	322
BssT1I	CCWWGG	1 cut(s)	65
Bst6I	CTCTTC	1 cut(s)	224
BstACI	GRCGYC	1 cut(s)	322
BstC8I	GCNNGC	1 cut(s)	62
BstDEI	CTNAG	5 cut(s)	226, 234, 278, 355, 382
BstKTI	GATC	3 cut(s)	198, 240, 249
BstMAI	GTCTC	4 cut(s)	224, 279, 332, 358
BstMBI	GATC	3 cut(s)	195, 237, 246
BstMWI	GCNNNNNNNGC	1 cut(s)	319
BstSFI	CTRYAG	1 cut(s)	242
BstV1I	GCAGC	3 cut(s)	155, 254, 328
BstV2I	GAAGAC	1 cut(s)	205
BstX2I	RGATCY	2 cut(s)	195, 237
BstYI	RGATCY	2 cut(s)	195, 237
BsuRI	GGCC	1 cut(s)	188
BtsIMutI	CAGTG	1 cut(s)	18
BveI	ACCTGC	1 cut(s)	356
Cac8I	GCNNGC	1 cut(s)	62
CseI	GACGC	1 cut(s)	311
CspCI	CAANNNNNGTGG	2 cut(s)	121, 156
CviAII	CATG	1 cut(s)	21
CviJI	RGCY	5 cut(s)	60, 89, 128, 188, 285
CviKI_1	RGCY	5 cut(s)	60, 89, 128, 188, 285
DdeI	CTNAG	5 cut(s)	226, 234, 278, 355, 382
DpnI	GATC	3 cut(s)	197, 239, 248
DpnII	GATC	3 cut(s)	195, 237, 246
EaeI	YGGCCR	1 cut(s)	186
Eam1104I	CTCTTC	1 cut(s)	224
EarI	CTCTTC	1 cut(s)	224
Eco130I	CCWWGG	1 cut(s)	65
EcoT14I	CCWWGG	1 cut(s)	65
ErhI	CCWWGG	1 cut(s)	65
Esp3I	CGTCTC	2 cut(s)	279, 332
FaeI	CATG	1 cut(s)	24
FaiI	YATR	3 cut(s)	22, 39, 351
FatI	CATG	1 cut(s)	20
Fnu4HI	GCNGC	5 cut(s)	144, 268, 314, 317, 320
Fsp4HI	GCNGC	5 cut(s)	144, 268, 314, 317, 320
GluI	GCNGC	5 cut(s)	144, 268, 314, 317, 320
GsaI	CCCAGC	1 cut(s)	289
HaeIII	GGCC	1 cut(s)	188
HgaI	GACGC	1 cut(s)	311
Hin1I	GRCGYC	1 cut(s)	322
Hin1II	CATG	1 cut(s)	24
HinfI	GANTC	3 cut(s)	224, 232, 307
HphI	GGTGA	2 cut(s)	313, 380
Hpy166II	GTNNAC	2 cut(s)	34, 256
Hpy188I	TCNGA	4 cut(s)	50, 157, 229, 237
Hpy188III	TCNNGA	1 cut(s)	340
Hpy8I	GTNNAC	2 cut(s)	34, 256
Hpy99I	CGWCG	4 cut(s)	161, 209, 212, 327
HpyCH4IV	ACGT	2 cut(s)	30, 204
HpyCH4V	TGCA	1 cut(s)	143
HpyF10VI	GCNNNNNNNGC	1 cut(s)	319
HpyF3I	CTNAG	5 cut(s)	226, 234, 278, 355, 382
HpySE526I	ACGT	2 cut(s)	30, 204
Hsp92I	GRCGYC	1 cut(s)	322
Hsp92II	CATG	1 cut(s)	24
Kzo9I	GATC	3 cut(s)	195, 237, 246
LmnI	GCTCC	1 cut(s)	158
LpnPI	CCDG	6 cut(s)	24, 128, 132, 170, 271, 351
Lsp1109I	GCAGC	3 cut(s)	155, 254, 328
MaeII	ACGT	2 cut(s)	30, 204
MaeIII	GTNAC	2 cut(s)	13, 368
MalI	GATC	3 cut(s)	197, 239, 248
MboI	GATC	3 cut(s)	195, 237, 246
MboII	GAAGA	2 cut(s)	205, 211
MflI	RGATCY	2 cut(s)	195, 237
MhlI	GDGCHC	1 cut(s)	155
MluCI	AATT	2 cut(s)	41, 81
MlyI	GAGTC	2 cut(s)	218, 226
MmeI	TCCRAC	1 cut(s)	180
MnlI	CCTC	4 cut(s)	176, 179, 227, 368
MspA1I	CMGCKG	2 cut(s)	313, 319
MwoI	GCNNNNNNNGC	1 cut(s)	319
NdeII	GATC	3 cut(s)	195, 237, 246
NlaIII	CATG	1 cut(s)	24
NlaIV	GGNNCC	2 cut(s)	197, 291
NmuCI	GTSAC	2 cut(s)	13, 368
PaqCI	CACCTGC	1 cut(s)	356
PfeI	GAWTC	1 cut(s)	307
PkrI	GCNGC	5 cut(s)	145, 269, 315, 318, 321
PleI	GAGTC	2 cut(s)	218, 226
PpsI	GAGTC	2 cut(s)	218, 226
PspFI	CCCAGC	1 cut(s)	285
PspN4I	GGNNCC	2 cut(s)	197, 291
PsuI	RGATCY	2 cut(s)	195, 237
SatI	GCNGC	5 cut(s)	144, 268, 314, 317, 320
Sau3AI	GATC	3 cut(s)	195, 237, 246
SchI	GAGTC	2 cut(s)	218, 226
SduI	GDGCHC	1 cut(s)	155
SetI	ASST	5 cut(s)	33, 168, 207, 287, 370
SfcI	CTRYAG	1 cut(s)	242
Sse9I	AATT	2 cut(s)	41, 81
SsiI	CCGC	2 cut(s)	313, 319
StyI	CCWWGG	1 cut(s)	65
TaiI	ACGT	2 cut(s)	33, 207
TaqI	TCGA	2 cut(s)	222, 339
TasI	AATT	2 cut(s)	41, 81
TauI	GCSGC	2 cut(s)	316, 322
TfiI	GAWTC	1 cut(s)	307
TscAI	CASTG	1 cut(s)	18
TseFI	GTSAC	2 cut(s)	13, 368
TseI	GCWGC	3 cut(s)	143, 267, 316
Tsp45I	GTSAC	2 cut(s)	13, 368
TspDTI	ATGAA	2 cut(s)	54, 320
TspRI	CASTG	1 cut(s)	18

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.