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| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_2g05190 FvH4_2g05191 |
| rosa_chinensis | RchiOBHm_Chr1g0337181 RchiOBHm_Chr2g0121011 |
| rosa_laevigata | RLG00000014847 RLG00000014850 RLG00000023918 RLG00000036182 RLG00000036367 |
| rosa_multiflora | Rmu_sc0000903.1_g000029 Rmu_sc0002973.1_g000006 Rmu_sc0004590.1_g000006 Rmu_sc0004976.1_g000015 Rmu_sc0005657.1_g000072 Rmu_sc0008105.1_g000001 Rmu_sc0009887.1_g000001 Rmu_sc0015317.1_g000001 Rmu_sc0027068.1_g000002 Rmu_sc0030281.1_g000001 Rmu_ssc0000259.1_g000046 |
| rosa_roxburghii | Rroxscaffold_5G00333420 Rroxscaffold_7G00210090 Rroxscaffold_7G00210150 |
| rosa_samantha | Rh3CG243900 |
| rosa_wichuraiana | Rw6G006560 Rw6G006570 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 842 |
| Acc36I | ACCTGC | 1 cut(s) | 1522 |
| AccB1I | GGYRCC | 2 cut(s) | 146, 356 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1368 |
| AccII | CGCG | 1 cut(s) | 1150 |
| AciI | CCGC | 5 cut(s) | 348, 376, 797, 1148, 1150 |
| AclWI | GGATC | 3 cut(s) | 596, 744, 1184 |
| AcoI | YGGCCR | 1 cut(s) | 504 |
| AcuI | CTGAAG | 1 cut(s) | 864 |
| AcvI | CACGTG | 1 cut(s) | 449 |
| AcyI | GRCGYC | 2 cut(s) | 1102, 1585 |
| AdeI | CACNNNGTG | 2 cut(s) | 239, 452 |
| AfaI | GTAC | 2 cut(s) | 554, 728 |
| AfiI | CCNNNNNNNGG | 8 cut(s) | 272, 380, 485, 830, 863, 930, 1210, 1368 |
| AgsI | TTSAA | 6 cut(s) | 45, 58, 290, 546, 578, 1123 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 469 |
| AhlI | ACTAGT | 3 cut(s) | 809, 905, 961 |
| AjnI | CCWGG | 2 cut(s) | 166, 1026 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 325, 357 |
| AluBI | AGCT | 6 cut(s) | 94, 530, 968, 1288, 1324, 1348 |
| AluI | AGCT | 6 cut(s) | 94, 530, 968, 1288, 1324, 1348 |
| Alw21I | GWGCWC | 3 cut(s) | 658, 1009, 1290 |
| Alw26I | GTCTC | 1 cut(s) | 477 |
| AlwI | GGATC | 3 cut(s) | 596, 744, 1184 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1402 |
| AoxI | GGCC | 4 cut(s) | 189, 402, 504, 921 |
| ApaI | GGGCCC | 1 cut(s) | 925 |
| ApeKI | GCWGC | 8 cut(s) | 134, 212, 215, 425, 530, 794, 1252, 1345 |
| AspS9I | GGNCC | 2 cut(s) | 921, 922 |
| AsuC2I | CCSGG | 1 cut(s) | 1174 |
| AsuHPI | GGTGA | 8 cut(s) | 182, 287, 464, 500, 593, 694, 776, 845 |
| BaeGI | GKGCMC | 1 cut(s) | 925 |
| BanI | GGYRCC | 2 cut(s) | 146, 356 |
| BanII | GRGCYC | 3 cut(s) | 925, 1290, 1453 |
| BauI | CACGAG | 3 cut(s) | 651, 825, 1363 |
| BbrPI | CACGTG | 1 cut(s) | 449 |
| BbsI | GAAGAC | 1 cut(s) | 1326 |
| Bbv12I | GWGCWC | 3 cut(s) | 658, 1009, 1290 |
| BbvCI | CCTCAGC | 1 cut(s) | 1559 |
| BbvI | GCAGC | 8 cut(s) | 146, 199, 202, 412, 517, 806, 1264, 1357 |
| BccI | CCATC | 4 cut(s) | 19, 401, 1359, 1362 |
| BceAI | ACGGC | 1 cut(s) | 1482 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 857, 891, 1181, 1215 |
| BciT130I | CCWGG | 2 cut(s) | 168, 1028 |
| BclI | TGATCA | 1 cut(s) | 121 |
| BcnI | CCSGG | 1 cut(s) | 1174 |
| BcoDI | GTCTC | 1 cut(s) | 477 |
| BcuI | ACTAGT | 3 cut(s) | 809, 905, 961 |
| BfaI | CTAG | 8 cut(s) | 246, 351, 459, 591, 606, 810, 906, 962 |
| BfmI | CTRYAG | 1 cut(s) | 1410 |
| BfuAI | ACCTGC | 1 cut(s) | 1522 |
| BglII | AGATCT | 1 cut(s) | 1194 |
| BisI | GCNGC | 9 cut(s) | 135, 213, 216, 348, 426, 531, 795, 1253, 1346 |
| BlpI | GCTNAGC | 1 cut(s) | 1373 |
| BlsI | GCNGC | 9 cut(s) | 136, 214, 217, 349, 427, 532, 796, 1254, 1347 |
| Bme1390I | CCNGG | 3 cut(s) | 168, 1028, 1174 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 469 |
| BmgT120I | GGNCC | 2 cut(s) | 921, 922 |
| BmiI | GGNNCC | 6 cut(s) | 89, 148, 358, 922, 923, 1452 |
| BmrFI | CCNGG | 3 cut(s) | 168, 1028, 1174 |
| BmrI | ACTGGG | 1 cut(s) | 1304 |
| BmsI | GCATC | 3 cut(s) | 445, 859, 1049 |
| BmuI | ACTGGG | 1 cut(s) | 1304 |
| BpiI | GAAGAC | 1 cut(s) | 1326 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 1181, 1213 |
| BpmI | CTGGAG | 1 cut(s) | 74 |
| Bpu10I | CCTNAGC | 3 cut(s) | 1188, 1284, 1559 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 1373 |
| BpuEI | CTTGAG | 2 cut(s) | 510, 879 |
| BpuMI | CCSGG | 1 cut(s) | 1174 |
| BsaAI | YACGTR | 1 cut(s) | 449 |
| BsaHI | GRCGYC | 2 cut(s) | 1102, 1585 |
| BsaJI | CCNNGG | 5 cut(s) | 166, 501, 990, 1027, 1148 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 457, 487, 838, 868 |
| Bsc4I | CCNNNNNNNGG | 8 cut(s) | 272, 380, 485, 830, 863, 930, 1210, 1368 |
| Bse118I | RCCGGY | 1 cut(s) | 137 |
| Bse1I | ACTGG | 4 cut(s) | 696, 888, 1256, 1310 |
| Bse3DI | GCAATG | 1 cut(s) | 1218 |
| BseBI | CCWGG | 2 cut(s) | 168, 1028 |
| BseDI | CCNNGG | 5 cut(s) | 166, 501, 990, 1027, 1148 |
| BseGI | GGATG | 1 cut(s) | 313 |
| BseLI | CCNNNNNNNGG | 8 cut(s) | 272, 380, 485, 830, 863, 930, 1210, 1368 |
| BseMI | GCAATG | 1 cut(s) | 1218 |
| BseMII | CTCAG | 8 cut(s) | 38, 177, 390, 1179, 1275, 1311, 1387, 1550 |
| BseNI | ACTGG | 4 cut(s) | 696, 888, 1256, 1310 |
| BseRI | GAGGAG | 1 cut(s) | 465 |
| BseSI | GKGCMC | 1 cut(s) | 925 |
| BseXI | GCAGC | 8 cut(s) | 146, 199, 202, 412, 517, 806, 1264, 1357 |
| BsgI | GTGCAG | 1 cut(s) | 843 |
| Bsh1236I | CGCG | 1 cut(s) | 1150 |
| Bsh1285I | CGRYCG | 2 cut(s) | 1057, 1601 |
| BshFI | GGCC | 4 cut(s) | 191, 404, 506, 923 |
| BshNI | GGYRCC | 2 cut(s) | 146, 356 |
| BsiEI | CGRYCG | 2 cut(s) | 1057, 1601 |
| BsiHKAI | GWGCWC | 3 cut(s) | 658, 1009, 1290 |
| BsiSI | CCGG | 2 cut(s) | 138, 1173 |
| BslFI | GGGAC | 1 cut(s) | 1062 |
| BslI | CCNNNNNNNGG | 8 cut(s) | 272, 380, 485, 830, 863, 930, 1210, 1368 |
| BsmAI | GTCTC | 1 cut(s) | 477 |
| BsmBI | CGTCTC | 1 cut(s) | 477 |
| BsmFI | GGGAC | 1 cut(s) | 1062 |
| BsmI | GAATGC | 1 cut(s) | 1111 |
| BsnI | GGCC | 4 cut(s) | 191, 404, 506, 923 |
| Bsp120I | GGGCCC | 1 cut(s) | 921 |
| Bsp1286I | GDGCHC | 5 cut(s) | 658, 925, 1009, 1290, 1453 |
| Bsp1407I | TGTACA | 1 cut(s) | 726 |
| Bsp143I | GATC | 7 cut(s) | 121, 601, 736, 1054, 1176, 1194, 1481 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 1373 |
| BspACI | CCGC | 5 cut(s) | 348, 376, 797, 1148, 1150 |
| BspANI | GGCC | 4 cut(s) | 191, 404, 506, 923 |
| BspCNI | CTCAG | 8 cut(s) | 37, 178, 391, 1180, 1276, 1312, 1386, 1551 |
| BspFNI | CGCG | 1 cut(s) | 1150 |
| BspHI | TCATGA | 1 cut(s) | 1506 |
| BspLI | GGNNCC | 6 cut(s) | 89, 148, 358, 922, 923, 1452 |
| BspMI | ACCTGC | 1 cut(s) | 1522 |
| BspPI | GGATC | 3 cut(s) | 596, 744, 1184 |
| BspT107I | GGYRCC | 2 cut(s) | 146, 356 |
| BsrDI | GCAATG | 1 cut(s) | 1218 |
| BsrFI | RCCGGY | 1 cut(s) | 137 |
| BsrGI | TGTACA | 1 cut(s) | 726 |
| BsrI | ACTGG | 4 cut(s) | 696, 888, 1256, 1310 |
| BssAI | RCCGGY | 1 cut(s) | 137 |
| BssECI | CCNNGG | 5 cut(s) | 166, 501, 990, 1027, 1148 |
| BssMI | GATC | 7 cut(s) | 121, 601, 736, 1054, 1176, 1194, 1481 |
| BssNI | GRCGYC | 2 cut(s) | 1102, 1585 |
| BssSI | CACGAG | 3 cut(s) | 651, 825, 1363 |
| Bst2BI | CACGAG | 3 cut(s) | 651, 825, 1363 |
| Bst2UI | CCWGG | 2 cut(s) | 168, 1028 |
| Bst4CI | ACNGT | 7 cut(s) | 109, 322, 775, 981, 1004, 1414, 1602 |
| Bst6I | CTCTTC | 2 cut(s) | 825, 1233 |
| BstACI | GRCGYC | 2 cut(s) | 1102, 1585 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 857 |
| BstAUI | TGTACA | 1 cut(s) | 726 |
| BstBAI | YACGTR | 1 cut(s) | 449 |
| BstC8I | GCNNGC | 5 cut(s) | 86, 139, 226, 439, 1595 |
| BstDSI | CCRYGG | 1 cut(s) | 1148 |
| BstF5I | GGATG | 1 cut(s) | 313 |
| BstFNI | CGCG | 1 cut(s) | 1150 |
| BstKTI | GATC | 7 cut(s) | 124, 604, 739, 1057, 1179, 1197, 1484 |
| BstMAI | GTCTC | 1 cut(s) | 477 |
| BstMBI | GATC | 7 cut(s) | 121, 601, 736, 1054, 1176, 1194, 1481 |
| BstMCI | CGRYCG | 2 cut(s) | 1057, 1601 |
| BstNI | CCWGG | 2 cut(s) | 168, 1028 |
| BstSCI | CCNGG | 3 cut(s) | 166, 1026, 1172 |
| BstSFI | CTRYAG | 1 cut(s) | 1410 |
| BstSLI | GKGCMC | 1 cut(s) | 925 |
| BstUI | CGCG | 1 cut(s) | 1150 |
| BstV1I | GCAGC | 8 cut(s) | 146, 199, 202, 412, 517, 806, 1264, 1357 |
| BstV2I | GAAGAC | 1 cut(s) | 1326 |
| BstX2I | RGATCY | 2 cut(s) | 736, 1194 |
| BstYI | RGATCY | 2 cut(s) | 736, 1194 |
| BsuRI | GGCC | 4 cut(s) | 191, 404, 506, 923 |
| BtgI | CCRYGG | 1 cut(s) | 1148 |
| BtgZI | GCGATG | 1 cut(s) | 882 |
| BtsCI | GGATG | 1 cut(s) | 313 |
| BtsI | GCAGTG | 6 cut(s) | 148, 150, 360, 385, 690, 846 |
| BveI | ACCTGC | 1 cut(s) | 1522 |
| Cac8I | GCNNGC | 5 cut(s) | 86, 139, 226, 439, 1595 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1402 |
| CciI | TCATGA | 1 cut(s) | 1506 |
| Cfr10I | RCCGGY | 1 cut(s) | 137 |
| Cfr13I | GGNCC | 2 cut(s) | 921, 922 |
| Cfr42I | CCGCGG | 1 cut(s) | 1151 |
| CseI | GACGC | 3 cut(s) | 1076, 1091, 1574 |
| Csp6I | GTAC | 2 cut(s) | 553, 727 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 892, 927 |
| CviAII | CATG | 6 cut(s) | 236, 949, 1010, 1137, 1388, 1507 |
| CviQI | GTAC | 2 cut(s) | 553, 727 |
| DpnI | GATC | 7 cut(s) | 123, 603, 738, 1056, 1178, 1196, 1483 |
| DpnII | GATC | 7 cut(s) | 121, 601, 736, 1054, 1176, 1194, 1481 |
| DraIII | CACNNNGTG | 2 cut(s) | 239, 452 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 842 |
| DriI | GACNNNNNGTC | 1 cut(s) | 469 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 842 |
| EaeI | YGGCCR | 1 cut(s) | 504 |
| Eam1104I | CTCTTC | 2 cut(s) | 825, 1233 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 469 |
| EarI | CTCTTC | 2 cut(s) | 825, 1233 |
| Ecl136II | GAGCTC | 1 cut(s) | 1288 |
| Eco24I | GRGCYC | 3 cut(s) | 925, 1290, 1453 |
| Eco53kI | GAGCTC | 1 cut(s) | 1288 |
| Eco57I | CTGAAG | 1 cut(s) | 864 |
| Eco72I | CACGTG | 1 cut(s) | 449 |
| EcoICRI | GAGCTC | 1 cut(s) | 1288 |
| EcoO109I | RGGNCCY | 1 cut(s) | 921 |
| EcoRII | CCWGG | 2 cut(s) | 166, 1026 |
| EcoT38I | GRGCYC | 3 cut(s) | 925, 1290, 1453 |
| Esp3I | CGTCTC | 1 cut(s) | 477 |
| FaeI | CATG | 6 cut(s) | 239, 952, 1013, 1140, 1391, 1510 |
| FaqI | GGGAC | 1 cut(s) | 1062 |
| FatI | CATG | 6 cut(s) | 235, 948, 1009, 1136, 1387, 1506 |
| FauI | CCCGC | 3 cut(s) | 383, 790, 1143 |
| FauNDI | CATATG | 1 cut(s) | 1081 |
| FbaI | TGATCA | 1 cut(s) | 121 |
| Fnu4HI | GCNGC | 9 cut(s) | 135, 213, 216, 348, 426, 531, 795, 1253, 1346 |
| FokI | GGATG | 1 cut(s) | 300 |
| FriOI | GRGCYC | 3 cut(s) | 925, 1290, 1453 |
| Fsp4HI | GCNGC | 9 cut(s) | 135, 213, 216, 348, 426, 531, 795, 1253, 1346 |
| FspBI | CTAG | 8 cut(s) | 246, 351, 459, 591, 606, 810, 906, 962 |
| GluI | GCNGC | 9 cut(s) | 135, 213, 216, 348, 426, 531, 795, 1253, 1346 |
| GsuI | CTGGAG | 1 cut(s) | 74 |
| HaeIII | GGCC | 4 cut(s) | 191, 404, 506, 923 |
| HapII | CCGG | 2 cut(s) | 138, 1173 |
| HgaI | GACGC | 3 cut(s) | 1076, 1091, 1574 |
| Hin1I | GRCGYC | 2 cut(s) | 1102, 1585 |
| Hin1II | CATG | 6 cut(s) | 239, 952, 1013, 1140, 1391, 1510 |
| HinfI | GANTC | 6 cut(s) | 182, 278, 491, 782, 1050, 1518 |
| HpaII | CCGG | 2 cut(s) | 138, 1173 |
| HphI | GGTGA | 8 cut(s) | 182, 287, 464, 500, 593, 694, 776, 845 |
| Hpy166II | GTNNAC | 1 cut(s) | 73 |
| Hpy188I | TCNGA | 4 cut(s) | 187, 400, 1076, 1321 |
| Hpy188III | TCNNGA | 4 cut(s) | 740, 779, 1187, 1507 |
| Hpy8I | GTNNAC | 1 cut(s) | 73 |
| Hpy99I | CGWCG | 2 cut(s) | 1107, 1590 |
| HpyAV | CCTTC | 7 cut(s) | 170, 239, 284, 452, 572, 1448, 1452 |
| HpyCH4III | ACNGT | 7 cut(s) | 109, 322, 775, 981, 1004, 1414, 1602 |
| HpyCH4IV | ACGT | 4 cut(s) | 50, 448, 555, 953 |
| HpySE526I | ACGT | 4 cut(s) | 50, 448, 555, 953 |
| Hsp92I | GRCGYC | 2 cut(s) | 1102, 1585 |
| Hsp92II | CATG | 6 cut(s) | 239, 952, 1013, 1140, 1391, 1510 |
| KroI | GCCGGC | 1 cut(s) | 137 |
| KroNI | GCCGGC | 1 cut(s) | 139 |
| Ksp22I | TGATCA | 1 cut(s) | 121 |
| KspI | CCGCGG | 1 cut(s) | 1151 |
| Kzo9I | GATC | 7 cut(s) | 121, 601, 736, 1054, 1176, 1194, 1481 |
| LmnI | GCTCC | 5 cut(s) | 93, 661, 1353, 1456, 1462 |
| Lsp1109I | GCAGC | 8 cut(s) | 146, 199, 202, 412, 517, 806, 1264, 1357 |
| LweI | GCATC | 3 cut(s) | 445, 859, 1049 |
| MaeI | CTAG | 8 cut(s) | 246, 351, 459, 591, 606, 810, 906, 962 |
| MaeII | ACGT | 4 cut(s) | 50, 448, 555, 953 |
| MaeIII | GTNAC | 6 cut(s) | 461, 581, 700, 833, 844, 1022 |
| MalI | GATC | 7 cut(s) | 123, 603, 738, 1056, 1178, 1196, 1483 |
| MboI | GATC | 7 cut(s) | 121, 601, 736, 1054, 1176, 1194, 1481 |
| MboII | GAAGA | 7 cut(s) | 70, 605, 777, 812, 1220, 1326, 1476 |
| MflI | RGATCY | 2 cut(s) | 736, 1194 |
| MhlI | GDGCHC | 5 cut(s) | 658, 925, 1009, 1290, 1453 |
| MluCI | AATT | 1 cut(s) | 753 |
| MlyI | GAGTC | 2 cut(s) | 176, 1044 |
| MmeI | TCCRAC | 2 cut(s) | 137, 739 |
| MroNI | GCCGGC | 1 cut(s) | 137 |
| MslI | CAYNNNNRTG | 2 cut(s) | 129, 486 |
| MspA1I | CMGCKG | 2 cut(s) | 797, 1150 |
| MspI | CCGG | 2 cut(s) | 138, 1173 |
| MspR9I | CCNGG | 3 cut(s) | 168, 1028, 1174 |
| Mva1269I | GAATGC | 1 cut(s) | 1111 |
| MvaI | CCWGG | 2 cut(s) | 168, 1028 |
| MvnI | CGCG | 1 cut(s) | 1150 |
| NaeI | GCCGGC | 1 cut(s) | 139 |
| NciI | CCSGG | 1 cut(s) | 1174 |
| NdeI | CATATG | 1 cut(s) | 1081 |
| NdeII | GATC | 7 cut(s) | 121, 601, 736, 1054, 1176, 1194, 1481 |
| NgoMIV | GCCGGC | 1 cut(s) | 137 |
| NlaIII | CATG | 6 cut(s) | 239, 952, 1013, 1140, 1391, 1510 |
| NlaIV | GGNNCC | 6 cut(s) | 89, 148, 358, 922, 923, 1452 |
| NmeAIII | GCCGAG | 2 cut(s) | 482, 971 |
| NmuCI | GTSAC | 6 cut(s) | 461, 581, 700, 833, 844, 1022 |
| PagI | TCATGA | 1 cut(s) | 1506 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 1594 |
| PctI | GAATGC | 1 cut(s) | 1111 |
| PdiI | GCCGGC | 1 cut(s) | 139 |
| PfeI | GAWTC | 4 cut(s) | 278, 491, 782, 1518 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1368 |
| PkrI | GCNGC | 9 cut(s) | 136, 214, 217, 349, 427, 532, 796, 1254, 1347 |
| Ple19I | CGATCG | 1 cut(s) | 1057 |
| PleI | GAGTC | 2 cut(s) | 176, 1044 |
| PmaCI | CACGTG | 1 cut(s) | 449 |
| PmlI | CACGTG | 1 cut(s) | 449 |
| PpsI | GAGTC | 2 cut(s) | 176, 1044 |
| Ppu21I | YACGTR | 1 cut(s) | 449 |
| Psp124BI | GAGCTC | 1 cut(s) | 1290 |
| Psp6I | CCWGG | 2 cut(s) | 166, 1026 |
| PspCI | CACGTG | 1 cut(s) | 449 |
| PspGI | CCWGG | 2 cut(s) | 166, 1026 |
| PspN4I | GGNNCC | 6 cut(s) | 89, 148, 358, 922, 923, 1452 |
| PspOMI | GGGCCC | 1 cut(s) | 921 |
| PspPI | GGNCC | 2 cut(s) | 921, 922 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1402 |
| PsuI | RGATCY | 2 cut(s) | 736, 1194 |
| PvuI | CGATCG | 1 cut(s) | 1057 |
| RsaI | GTAC | 2 cut(s) | 554, 728 |
| RsaNI | GTAC | 2 cut(s) | 553, 727 |
| RseI | CAYNNNNRTG | 2 cut(s) | 129, 486 |
| SacI | GAGCTC | 1 cut(s) | 1290 |
| SacII | CCGCGG | 1 cut(s) | 1151 |
| SatI | GCNGC | 9 cut(s) | 135, 213, 216, 348, 426, 531, 795, 1253, 1346 |
| Sau3AI | GATC | 7 cut(s) | 121, 601, 736, 1054, 1176, 1194, 1481 |
| Sau96I | GGNCC | 2 cut(s) | 921, 922 |
| SchI | GAGTC | 2 cut(s) | 176, 1044 |
| ScrFI | CCNGG | 3 cut(s) | 168, 1028, 1174 |
| SduI | GDGCHC | 5 cut(s) | 658, 925, 1009, 1290, 1453 |
| SfaNI | GCATC | 3 cut(s) | 445, 859, 1049 |
| SfcI | CTRYAG | 1 cut(s) | 1410 |
| Sfr303I | CCGCGG | 1 cut(s) | 1151 |
| SgrBI | CCGCGG | 1 cut(s) | 1151 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 129, 486 |
| SmlI | CTYRAG | 2 cut(s) | 525, 894 |
| SmoI | CTYRAG | 2 cut(s) | 525, 894 |
| SpeI | ACTAGT | 3 cut(s) | 809, 905, 961 |
| Sse9I | AATT | 1 cut(s) | 753 |
| SsiI | CCGC | 5 cut(s) | 348, 376, 797, 1148, 1150 |
| SspMI | CTAG | 8 cut(s) | 246, 351, 459, 591, 606, 810, 906, 962 |
| SstI | GAGCTC | 1 cut(s) | 1290 |
| StyD4I | CCNGG | 3 cut(s) | 166, 1026, 1172 |
| TaaI | ACNGT | 7 cut(s) | 109, 322, 775, 981, 1004, 1414, 1602 |
| TaiI | ACGT | 4 cut(s) | 53, 451, 558, 956 |
| TaqI | TCGA | 2 cut(s) | 1053, 1236 |
| TasI | AATT | 1 cut(s) | 753 |
| TatI | WGTACW | 1 cut(s) | 726 |
| TauI | GCSGC | 1 cut(s) | 350 |
| TfiI | GAWTC | 4 cut(s) | 278, 491, 782, 1518 |
| TseFI | GTSAC | 6 cut(s) | 461, 581, 700, 833, 844, 1022 |
| TseI | GCWGC | 8 cut(s) | 134, 212, 215, 425, 530, 794, 1252, 1345 |
| Tsp45I | GTSAC | 6 cut(s) | 461, 581, 700, 833, 844, 1022 |
| TspDTI | ATGAA | 5 cut(s) | 189, 402, 1023, 1376, 1510 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1368 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1467 |
| XspI | CTAG | 8 cut(s) | 246, 351, 459, 591, 606, 810, 906, 962 |