Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0006910

Physical Location & Seq

Genomic Coordinates Reverse (-)

30008615 .. 30009076

Gene Structure 462 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000023918

Sequence Viewer

CDS Protein Promoter (2k)

Length: 420 bp

ATGAAATCGAAACCGAAGCCAATCGGTTCTGTTGTTGCCATTTTCCGATTCCTAACAGCCACCACCAAGACTGCAGCAGTGCGCTCCGACGACAACCTCCTCTCTCTGCTAGTTCTGGCAGTTAGGATCCCAAACGTCATCGTCGTCGTCTTCCTCTTCGACTCAGAGACTCCGATCCTACAAATTGGCGTGGACAGAGATCGCTGCTCGTCTTTACGAAGCTGGGAACCGATGGTGGTGATGAGTCGGCGGCAGCGTCGTTGTCTCTATCTCTTCGAGGAATCCTATATCTCAGTAGGGGCAGGTGACAGAGGCATCTTAGAACGACGTCGAAGCAAGTACATCGATGGAAGAGGCTTTACACTTACAGCAATTTGGGGTGTTTGTCCTGAGATCGGGTTTCTGGGTTTCAGTCTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

140

Amino Acids

15.63

Weight (kDa)

9.84

Isoelectric Point (pI)

54.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006910)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g05190 FvH4_2g05191
rosa_chinensis	RchiOBHm_Chr1g0337181 RchiOBHm_Chr2g0121011
rosa_laevigata	RLG00000014847 RLG00000014850 RLG00000023918 RLG00000036182 RLG00000036367
rosa_multiflora	Rmu_sc0000903.1_g000029 Rmu_sc0002973.1_g000006 Rmu_sc0004590.1_g000006 Rmu_sc0004976.1_g000015 Rmu_sc0005657.1_g000072 Rmu_sc0008105.1_g000001 Rmu_sc0009887.1_g000001 Rmu_sc0015317.1_g000001 Rmu_sc0027068.1_g000002 Rmu_sc0030281.1_g000001 Rmu_ssc0000259.1_g000046
rosa_roxburghii	Rroxscaffold_5G00333420 Rroxscaffold_7G00210090 Rroxscaffold_7G00210150
rosa_samantha	Rh3CG243900
rosa_wichuraiana	Rw6G006560 Rw6G006570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	293
AatII	GACGTC	1 cut(s)	331
Acc36I	ACCTGC	1 cut(s)	293
AciI	CCGC	1 cut(s)	250
AclWI	GGATC	3 cut(s)	121, 134, 169
AcyI	GRCGYC	1 cut(s)	328
AfaI	GTAC	1 cut(s)	341
AfiI	CCNNNNNNNGG	1 cut(s)	395
AluBI	AGCT	1 cut(s)	222
AluI	AGCT	1 cut(s)	222
Alw26I	GTCTC	2 cut(s)	161, 269
AlwI	GGATC	3 cut(s)	121, 134, 169
AlwNI	CAGNNNCTG	1 cut(s)	417
ApeKI	GCWGC	3 cut(s)	74, 204, 253
AspLEI	GCGC	1 cut(s)	84
AsuHPI	GGTGA	2 cut(s)	250, 317
BamHI	GGATCC	1 cut(s)	126
BarI	GAAGNNNNNNTAC	2 cut(s)	343, 375
BbsI	GAAGAC	1 cut(s)	142
BbvI	GCAGC	3 cut(s)	86, 191, 265
BccI	CCATC	2 cut(s)	226, 341
BcgI	CGANNNNNNTGC	2 cut(s)	325, 359
BcoDI	GTCTC	2 cut(s)	161, 269
BfaI	CTAG	1 cut(s)	110
BfmI	CTRYAG	1 cut(s)	72
BfuAI	ACCTGC	1 cut(s)	293
BisI	GCNGC	4 cut(s)	75, 205, 251, 254
BlsI	GCNGC	4 cut(s)	76, 206, 252, 255
BmiI	GGNNCC	2 cut(s)	128, 228
BmsI	GCATC	1 cut(s)	324
BpiI	GAAGAC	1 cut(s)	142
Bsa29I	ATCGAT	1 cut(s)	345
BsaHI	GRCGYC	1 cut(s)	328
Bsc4I	CCNNNNNNNGG	1 cut(s)	395
BseCI	ATCGAT	1 cut(s)	345
BseLI	CCNNNNNNNGG	1 cut(s)	395
BseMII	CTCAG	3 cut(s)	177, 306, 381
BseRI	GAGGAG	1 cut(s)	89
BseXI	GCAGC	3 cut(s)	86, 191, 265
BseYI	CCCAGC	1 cut(s)	222
BshVI	ATCGAT	1 cut(s)	345
BslI	CCNNNNNNNGG	1 cut(s)	395
BsmAI	GTCTC	2 cut(s)	161, 269
Bsp143I	GATC	4 cut(s)	126, 174, 199, 393
BspACI	CCGC	1 cut(s)	250
BspCNI	CTCAG	3 cut(s)	176, 305, 382
BspDI	ATCGAT	1 cut(s)	345
BspLI	GGNNCC	2 cut(s)	128, 228
BspMAI	CTGCAG	1 cut(s)	76
BspMI	ACCTGC	1 cut(s)	293
BspPI	GGATC	3 cut(s)	121, 134, 169
BssMI	GATC	4 cut(s)	126, 174, 199, 393
BssNI	GRCGYC	1 cut(s)	328
Bst6I	CTCTTC	3 cut(s)	161, 278, 346
BstACI	GRCGYC	1 cut(s)	328
BstDEI	CTNAG	4 cut(s)	163, 292, 319, 390
BstHHI	GCGC	1 cut(s)	84
BstKTI	GATC	4 cut(s)	129, 177, 202, 396
BstMAI	GTCTC	2 cut(s)	161, 269
BstMBI	GATC	4 cut(s)	126, 174, 199, 393
BstSFI	CTRYAG	1 cut(s)	72
BstV1I	GCAGC	3 cut(s)	86, 191, 265
BstV2I	GAAGAC	1 cut(s)	142
BstX2I	RGATCY	1 cut(s)	126
BstYI	RGATCY	1 cut(s)	126
Bsu15I	ATCGAT	1 cut(s)	345
BsuTUI	ATCGAT	1 cut(s)	345
BtsI	GCAGTG	1 cut(s)	84
BtsIMutI	CAGTG	1 cut(s)	84
BveI	ACCTGC	1 cut(s)	293
CaiI	CAGNNNCTG	1 cut(s)	417
CfoI	GCGC	1 cut(s)	84
ClaI	ATCGAT	1 cut(s)	345
CseI	GACGC	1 cut(s)	245
Csp6I	GTAC	1 cut(s)	340
CviJI	RGCY	4 cut(s)	19, 59, 222, 357
CviKI_1	RGCY	4 cut(s)	19, 59, 222, 357
CviQI	GTAC	1 cut(s)	340
DdeI	CTNAG	4 cut(s)	163, 292, 319, 390
DpnI	GATC	4 cut(s)	128, 176, 201, 395
DpnII	GATC	4 cut(s)	126, 174, 199, 393
Eam1104I	CTCTTC	3 cut(s)	161, 278, 346
EarI	CTCTTC	3 cut(s)	161, 278, 346
FaiI	YATR	1 cut(s)	288
Fnu4HI	GCNGC	4 cut(s)	75, 205, 251, 254
Fsp4HI	GCNGC	4 cut(s)	75, 205, 251, 254
FspBI	CTAG	1 cut(s)	110
GlaI	GCGC	1 cut(s)	83
GluI	GCNGC	4 cut(s)	75, 205, 251, 254
GsaI	CCCAGC	1 cut(s)	226
HgaI	GACGC	1 cut(s)	245
HhaI	GCGC	1 cut(s)	84
Hin1I	GRCGYC	1 cut(s)	328
Hin6I	GCGC	1 cut(s)	82
HinP1I	GCGC	1 cut(s)	82
HinfI	GANTC	5 cut(s)	48, 161, 169, 244, 281
HphI	GGTGA	2 cut(s)	250, 317
Hpy166II	GTNNAC	1 cut(s)	193
Hpy188I	TCNGA	5 cut(s)	47, 88, 166, 174, 419
Hpy188III	TCNNGA	1 cut(s)	389
Hpy8I	GTNNAC	1 cut(s)	193
Hpy99I	CGWCG	6 cut(s)	92, 146, 149, 261, 330, 333
HpyCH4IV	ACGT	2 cut(s)	135, 328
HpyCH4V	TGCA	1 cut(s)	74
HpyF3I	CTNAG	4 cut(s)	163, 292, 319, 390
HpySE526I	ACGT	2 cut(s)	135, 328
Hsp92I	GRCGYC	1 cut(s)	328
HspAI	GCGC	1 cut(s)	82
Kzo9I	GATC	4 cut(s)	126, 174, 199, 393
LmnI	GCTCC	1 cut(s)	89
LpnPI	CCDG	5 cut(s)	101, 208, 288, 389, 402
Lsp1109I	GCAGC	3 cut(s)	86, 191, 265
LweI	GCATC	1 cut(s)	324
MaeI	CTAG	1 cut(s)	110
MaeII	ACGT	2 cut(s)	135, 328
MaeIII	GTNAC	1 cut(s)	305
MalI	GATC	4 cut(s)	128, 176, 201, 395
MboI	GATC	4 cut(s)	126, 174, 199, 393
MboII	GAAGA	4 cut(s)	142, 148, 265, 363
MflI	RGATCY	1 cut(s)	126
MluCI	AATT	2 cut(s)	183, 372
MlyI	GAGTC	3 cut(s)	155, 163, 253
MmeI	TCCRAC	1 cut(s)	111
MnlI	CCTC	6 cut(s)	107, 110, 164, 271, 305, 347
NdeII	GATC	4 cut(s)	126, 174, 199, 393
NlaIV	GGNNCC	2 cut(s)	128, 228
NmuCI	GTSAC	1 cut(s)	305
PaqCI	CACCTGC	1 cut(s)	293
PcsI	WCGNNNNNNNCGW	2 cut(s)	141, 253
PfeI	GAWTC	2 cut(s)	48, 281
PkrI	GCNGC	4 cut(s)	76, 206, 252, 255
PleI	GAGTC	3 cut(s)	155, 163, 252
PpsI	GAGTC	3 cut(s)	155, 163, 252
PspFI	CCCAGC	1 cut(s)	222
PspN4I	GGNNCC	2 cut(s)	128, 228
PstI	CTGCAG	1 cut(s)	76
PstNI	CAGNNNCTG	1 cut(s)	417
PsuI	RGATCY	1 cut(s)	126
RsaI	GTAC	1 cut(s)	341
RsaNI	GTAC	1 cut(s)	340
SatI	GCNGC	4 cut(s)	75, 205, 251, 254
Sau3AI	GATC	4 cut(s)	126, 174, 199, 393
SchI	GAGTC	3 cut(s)	155, 163, 253
SetI	ASST	5 cut(s)	99, 138, 224, 307, 331
SfaNI	GCATC	1 cut(s)	324
SfcI	CTRYAG	1 cut(s)	72
Sse9I	AATT	2 cut(s)	183, 372
SsiI	CCGC	1 cut(s)	250
SspMI	CTAG	1 cut(s)	110
TaiI	ACGT	2 cut(s)	138, 331
TaqI	TCGA	5 cut(s)	8, 159, 276, 331, 345
TasI	AATT	2 cut(s)	183, 372
TatI	WGTACW	1 cut(s)	339
TauI	GCSGC	1 cut(s)	253
TfiI	GAWTC	2 cut(s)	48, 281
TscAI	CASTG	1 cut(s)	84
TseFI	GTSAC	1 cut(s)	305
TseI	GCWGC	3 cut(s)	74, 204, 253
Tsp45I	GTSAC	1 cut(s)	305
TspDTI	ATGAA	1 cut(s)	17
TspRI	CASTG	1 cut(s)	84
XspI	CTAG	1 cut(s)	110
ZraI	GACGTC	1 cut(s)	329

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.