Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0008988

Physical Location & Seq

Genomic Coordinates Reverse (-)

21718699 .. 21720001

Gene Structure 1303 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g27310.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 804 bp

ATGACGGTGGCATCGATCAAAGAGGCGGAAATCCAGCCATTGTTTGAGTTTCTGTTCAAGAGAGTTGAAGAAGCAATGCAGAGTTGCACCGGCTTCGAATCCCTCATCGGAAATTTCAAGTCCACGCTAGACCCTCTCCAACCATGGATCAAAGGAGAATGCAAGGGACTTGAGGACCTCGTGAATAAAGAAGGTGCAGATCTGGATGAAAAAATCCACAGGGGCATAGAGATAGTGGGAAAGTTCACCAACGTTCAGATATGGAAGTATTACTGTGGCAGATGTCATTACACTGATCAGCTTGTTCAGTTGGACATATACTTCAACCAACAATTAGATTTTCTGATGACAAAGGAAACTTGTGAGTGGGGGAAACTGGTTGCTGAAATGGATAGGAGACAATCTGCCATAGCAGAGAAGTTATCGCAGCTTGGAGGAGAGGAACTTTCAGAGATGTTAGAGAAGCAGGAAGGTTTGTCCGAGGCCTTGTTGTTGTTAAGAAATACAGAGACAGCGCTAACTGTGCATGATCAAATGGAAGAGGAAGGCACGGAGGAATTGTGTGCTGCATTAGAATCAGCATATTTGAGCCTGGGTTCCAGTATTAAACTAATAAAGGAGCAGTGTGCAACCATATTTAAACCCCTCCTTGAGGATCTCATATTGTCACTCAGCGACTCAGGAAAACCGAAGAGCAATGATGTCAAGCGGCACTCCAAGGGGGAACTCAAAAGTTACGGTAGAAATGAAGAATGGTGCGGAGTTGGTTCTAGAGTGCTGCAAGAGTTGGGCTGTGATCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009909 GO:0009910 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0048519 GO:0048580 GO:0048581 GO:0048831 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051239 GO:0051241 GO:0051716 GO:0060089 GO:0060860 GO:0060862 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564 GO:2000026 GO:2000241 GO:2000242

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

268

Amino Acids

30.2

Weight (kDa)

4.77

Isoelectric Point (pI)

41.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RPW8	PF05659	12 - 131	1.6e-07	Arabidopsis broad-spectrum mildew resistance protein RPW8

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008988)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g27310
rosa_laevigata	RLG00000011726 RLG00000011727 RLG00000030282
rosa_multiflora	Rmu_sc0003139.1_g000047
rosa_rugosa	Rorug06G0258300 Rorug06G0258400 Rorug06G0258500 Rorug06G0258600
rosa_samantha	Rh1DG298000 Rh6AG370900 Rh6BG378400 Rh6BG378500 Rh6BG378600 Rh6BG378700 Rh6CG384000 Rh6CG384100 Rh6DG370900 Rh6DG371000 Rh6DG371100 Rh6DG371200 Rh6DG371300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	26, 709, 759
AclI	AACGTT	1 cut(s)	252
AclWI	GGATC	2 cut(s)	155, 663
AcsI	RAATTY	1 cut(s)	112
AfeI	AGCGCT	1 cut(s)	516
AfiI	CCNNNNNNNGG	1 cut(s)	652
AgsI	TTSAA	4 cut(s)	58, 68, 118, 325
AjnI	CCWGG	1 cut(s)	591
AluBI	AGCT	2 cut(s)	301, 430
AluI	AGCT	2 cut(s)	301, 430
Alw26I	GTCTC	2 cut(s)	391, 503
AlwI	GGATC	2 cut(s)	155, 663
Aor51HI	AGCGCT	1 cut(s)	516
AoxI	GGCC	1 cut(s)	483
ApeKI	GCWGC	3 cut(s)	427, 566, 778
ApoI	RAATTY	1 cut(s)	112
AspLEI	GCGC	1 cut(s)	517
AspS9I	GGNCC	1 cut(s)	175
AsuHPI	GGTGA	1 cut(s)	238
AsuII	TTCGAA	1 cut(s)	96
AvaII	GGWCC	1 cut(s)	175
BauI	CACGAG	1 cut(s)	179
BbvI	GCAGC	3 cut(s)	439, 553, 765
BcgI	CGANNNNNNTGC	2 cut(s)	76, 110
BciT130I	CCWGG	1 cut(s)	593
BclI	TGATCA	3 cut(s)	295, 529, 796
BcoDI	GTCTC	2 cut(s)	391, 503
BfaI	CTAG	2 cut(s)	128, 771
BfoI	RGCGCY	1 cut(s)	518
BglII	AGATCT	1 cut(s)	199
BisI	GCNGC	4 cut(s)	428, 567, 710, 779
BlsI	GCNGC	4 cut(s)	429, 568, 711, 780
Bme1390I	CCNGG	1 cut(s)	593
Bme18I	GGWCC	1 cut(s)	175
BmgT120I	GGNCC	1 cut(s)	175
BmiI	GGNNCC	1 cut(s)	598
BmrFI	CCNGG	1 cut(s)	593
BmsI	GCATC	1 cut(s)	20
Bpu14I	TTCGAA	1 cut(s)	96
BpuEI	CTTGAG	2 cut(s)	191, 671
Bsa29I	ATCGAT	1 cut(s)	14
BsaJI	CCNNGG	4 cut(s)	143, 480, 592, 717
BsaXI	ACNNNNNCTCC	2 cut(s)	545, 575
Bsc4I	CCNNNNNNNGG	1 cut(s)	652
Bse118I	RCCGGY	1 cut(s)	89
Bse1I	ACTGG	2 cut(s)	381, 600
Bse3DI	GCAATG	2 cut(s)	81, 703
BseBI	CCWGG	1 cut(s)	593
BseCI	ATCGAT	1 cut(s)	14
BseDI	CCNNGG	4 cut(s)	143, 480, 592, 717
BseGI	GGATG	1 cut(s)	211
BseLI	CCNNNNNNNGG	1 cut(s)	652
BseMI	GCAATG	2 cut(s)	81, 703
BseMII	CTCAG	2 cut(s)	685, 693
BseNI	ACTGG	2 cut(s)	381, 600
BseRI	GAGGAG	1 cut(s)	450
BseXI	GCAGC	3 cut(s)	439, 553, 765
BsgI	GTGCAG	1 cut(s)	216
BshFI	GGCC	1 cut(s)	485
BshVI	ATCGAT	1 cut(s)	14
BsiSI	CCGG	1 cut(s)	90
BslFI	GGGAC	1 cut(s)	180
BslI	CCNNNNNNNGG	1 cut(s)	652
BsmAI	GTCTC	2 cut(s)	391, 503
BsmFI	GGGAC	1 cut(s)	180
BsmI	GAATGC	1 cut(s)	164
BsnI	GGCC	1 cut(s)	485
Bsp119I	TTCGAA	1 cut(s)	96
Bsp143I	GATC	7 cut(s)	15, 147, 199, 295, 529, 655, 796
Bsp19I	CCATGG	1 cut(s)	143
BspACI	CCGC	3 cut(s)	26, 709, 759
BspANI	GGCC	1 cut(s)	485
BspCNI	CTCAG	2 cut(s)	684, 692
BspDI	ATCGAT	1 cut(s)	14
BspLI	GGNNCC	1 cut(s)	598
BspPI	GGATC	2 cut(s)	155, 663
BspQI	GCTCTTC	1 cut(s)	686
BspT104I	TTCGAA	1 cut(s)	96
BsrDI	GCAATG	2 cut(s)	81, 703
BsrFI	RCCGGY	1 cut(s)	89
BsrI	ACTGG	2 cut(s)	381, 600
BssAI	RCCGGY	1 cut(s)	89
BssECI	CCNNGG	4 cut(s)	143, 480, 592, 717
BssMI	GATC	7 cut(s)	15, 147, 199, 295, 529, 655, 796
BssSI	CACGAG	1 cut(s)	179
BssT1I	CCWWGG	2 cut(s)	143, 717
Bst2BI	CACGAG	1 cut(s)	179
Bst2UI	CCWGG	1 cut(s)	593
Bst4CI	ACNGT	4 cut(s)	7, 275, 523, 740
Bst6I	CTCTTC	2 cut(s)	534, 686
BstBI	TTCGAA	1 cut(s)	96
BstDEI	CTNAG	2 cut(s)	671, 679
BstDSI	CCRYGG	1 cut(s)	143
BstENI	CCTNNNNNAGG	1 cut(s)	650
BstF5I	GGATG	1 cut(s)	211
BstH2I	RGCGCY	1 cut(s)	518
BstHHI	GCGC	1 cut(s)	517
BstKTI	GATC	7 cut(s)	18, 150, 202, 298, 532, 658, 799
BstMAI	GTCTC	2 cut(s)	391, 503
BstMBI	GATC	7 cut(s)	15, 147, 199, 295, 529, 655, 796
BstMWI	GCNNNNNNNGC	1 cut(s)	523
BstNI	CCWGG	1 cut(s)	593
BstSCI	CCNGG	1 cut(s)	591
BstV1I	GCAGC	3 cut(s)	439, 553, 765
BstX2I	RGATCY	2 cut(s)	199, 655
BstYI	RGATCY	2 cut(s)	199, 655
Bsu15I	ATCGAT	1 cut(s)	14
BsuRI	GGCC	1 cut(s)	485
BsuTUI	ATCGAT	1 cut(s)	14
BtgI	CCRYGG	1 cut(s)	143
BtsCI	GGATG	1 cut(s)	211
BtsI	GCAGTG	1 cut(s)	629
BtsIMutI	CAGTG	2 cut(s)	291, 629
CfoI	GCGC	1 cut(s)	517
Cfr10I	RCCGGY	1 cut(s)	89
Cfr13I	GGNCC	1 cut(s)	175
ClaI	ATCGAT	1 cut(s)	14
CviAII	CATG	2 cut(s)	144, 527
CviJI	RGCY	7 cut(s)	37, 93, 301, 430, 485, 591, 792
CviKI_1	RGCY	7 cut(s)	37, 93, 301, 430, 485, 591, 792
DdeI	CTNAG	2 cut(s)	671, 679
DpnI	GATC	7 cut(s)	17, 149, 201, 297, 531, 657, 798
DpnII	GATC	7 cut(s)	15, 147, 199, 295, 529, 655, 796
DraI	TTTAAA	1 cut(s)	640
Eam1104I	CTCTTC	2 cut(s)	534, 686
EarI	CTCTTC	2 cut(s)	534, 686
EciI	GGCGGA	1 cut(s)	41
Eco130I	CCWWGG	2 cut(s)	143, 717
Eco147I	AGGCCT	1 cut(s)	485
Eco47I	GGWCC	1 cut(s)	175
Eco47III	AGCGCT	1 cut(s)	516
EcoNI	CCTNNNNNAGG	1 cut(s)	650
EcoO109I	RGGNCCY	1 cut(s)	175
EcoRII	CCWGG	1 cut(s)	591
EcoT14I	CCWWGG	2 cut(s)	143, 717
ErhI	CCWWGG	2 cut(s)	143, 717
FaeI	CATG	2 cut(s)	147, 530
FaqI	GGGAC	1 cut(s)	180
FatI	CATG	2 cut(s)	143, 526
FbaI	TGATCA	3 cut(s)	295, 529, 796
Fnu4HI	GCNGC	4 cut(s)	428, 567, 710, 779
FokI	GGATG	1 cut(s)	218
Fsp4HI	GCNGC	4 cut(s)	428, 567, 710, 779
FspBI	CTAG	2 cut(s)	128, 771
GlaI	GCGC	1 cut(s)	516
GluI	GCNGC	4 cut(s)	428, 567, 710, 779
HaeII	RGCGCY	1 cut(s)	518
HaeIII	GGCC	1 cut(s)	485
HapII	CCGG	1 cut(s)	90
HhaI	GCGC	1 cut(s)	517
Hin1II	CATG	2 cut(s)	147, 530
Hin6I	GCGC	1 cut(s)	515
HinP1I	GCGC	1 cut(s)	515
HinfI	GANTC	3 cut(s)	98, 575, 677
HpaII	CCGG	1 cut(s)	90
HphI	GGTGA	1 cut(s)	238
Hpy166II	GTNNAC	2 cut(s)	123, 246
Hpy188I	TCNGA	5 cut(s)	110, 258, 345, 451, 481
Hpy188III	TCNNGA	5 cut(s)	58, 181, 203, 681, 771
Hpy8I	GTNNAC	2 cut(s)	123, 246
HpyAV	CCTTC	3 cut(s)	185, 464, 539
HpyCH4III	ACNGT	4 cut(s)	7, 275, 523, 740
HpyCH4IV	ACGT	1 cut(s)	252
HpyCH4V	TGCA	8 cut(s)	79, 87, 162, 197, 526, 569, 629, 781
HpyF10VI	GCNNNNNNNGC	1 cut(s)	523
HpyF3I	CTNAG	2 cut(s)	671, 679
HpySE526I	ACGT	1 cut(s)	252
Hsp92II	CATG	2 cut(s)	147, 530
HspAI	GCGC	1 cut(s)	515
Ksp22I	TGATCA	3 cut(s)	295, 529, 796
Kzo9I	GATC	7 cut(s)	15, 147, 199, 295, 529, 655, 796
LguI	GCTCTTC	1 cut(s)	686
LmnI	GCTCC	1 cut(s)	619
Lsp1109I	GCAGC	3 cut(s)	439, 553, 765
LweI	GCATC	1 cut(s)	20
MaeI	CTAG	2 cut(s)	128, 771
MaeII	ACGT	1 cut(s)	252
MaeIII	GTNAC	2 cut(s)	666, 734
MalI	GATC	7 cut(s)	17, 149, 201, 297, 531, 657, 798
MboI	GATC	7 cut(s)	15, 147, 199, 295, 529, 655, 796
MboII	GAAGA	4 cut(s)	80, 551, 703, 761
MflI	RGATCY	2 cut(s)	199, 655
MluCI	AATT	3 cut(s)	112, 332, 557
MlyI	GAGTC	1 cut(s)	671
MmeI	TCCRAC	2 cut(s)	163, 291
MseI	TTAA	3 cut(s)	497, 606, 639
MspI	CCGG	1 cut(s)	90
MspR9I	CCNGG	1 cut(s)	593
Mva1269I	GAATGC	1 cut(s)	164
MvaI	CCWGG	1 cut(s)	593
MwoI	GCNNNNNNNGC	1 cut(s)	523
NcoI	CCATGG	1 cut(s)	143
NdeII	GATC	7 cut(s)	15, 147, 199, 295, 529, 655, 796
NlaIII	CATG	2 cut(s)	147, 530
NlaIV	GGNNCC	1 cut(s)	598
NmuCI	GTSAC	1 cut(s)	666
NspV	TTCGAA	1 cut(s)	96
PceI	AGGCCT	1 cut(s)	485
PciSI	GCTCTTC	1 cut(s)	686
PcsI	WCGNNNNNNNCGW	1 cut(s)	11
PctI	GAATGC	1 cut(s)	164
PfeI	GAWTC	2 cut(s)	98, 575
PkrI	GCNGC	4 cut(s)	429, 568, 711, 780
PleI	GAGTC	1 cut(s)	671
PpsI	GAGTC	1 cut(s)	671
PpuMI	RGGWCCY	1 cut(s)	175
Psp1406I	AACGTT	1 cut(s)	252
Psp5II	RGGWCCY	1 cut(s)	175
Psp6I	CCWGG	1 cut(s)	591
PspGI	CCWGG	1 cut(s)	591
PspN4I	GGNNCC	1 cut(s)	598
PspPI	GGNCC	1 cut(s)	175
PspPPI	RGGWCCY	1 cut(s)	175
PsuI	RGATCY	2 cut(s)	199, 655
SapI	GCTCTTC	1 cut(s)	686
SaqAI	TTAA	3 cut(s)	497, 606, 639
SatI	GCNGC	4 cut(s)	428, 567, 710, 779
Sau3AI	GATC	7 cut(s)	15, 147, 199, 295, 529, 655, 796
Sau96I	GGNCC	1 cut(s)	175
SchI	GAGTC	1 cut(s)	671
ScrFI	CCNGG	1 cut(s)	593
SetI	ASST	6 cut(s)	180, 196, 255, 303, 432, 475
SfaNI	GCATC	1 cut(s)	20
SfuI	TTCGAA	1 cut(s)	96
SinI	GGWCC	1 cut(s)	175
SmlI	CTYRAG	2 cut(s)	170, 650
SmoI	CTYRAG	2 cut(s)	170, 650
Sse9I	AATT	3 cut(s)	112, 332, 557
SseBI	AGGCCT	1 cut(s)	485
SsiI	CCGC	3 cut(s)	26, 709, 759
SspMI	CTAG	2 cut(s)	128, 771
StuI	AGGCCT	1 cut(s)	485
StyD4I	CCNGG	1 cut(s)	591
StyI	CCWWGG	2 cut(s)	143, 717
TaaI	ACNGT	4 cut(s)	7, 275, 523, 740
TaiI	ACGT	1 cut(s)	255
TaqI	TCGA	2 cut(s)	14, 96
TasI	AATT	3 cut(s)	112, 332, 557
TauI	GCSGC	1 cut(s)	712
TfiI	GAWTC	2 cut(s)	98, 575
Tru1I	TTAA	3 cut(s)	497, 606, 639
Tru9I	TTAA	3 cut(s)	497, 606, 639
TscAI	CASTG	2 cut(s)	298, 629
TseFI	GTSAC	1 cut(s)	666
TseI	GCWGC	3 cut(s)	427, 566, 778
Tsp45I	GTSAC	1 cut(s)	666
TspDTI	ATGAA	2 cut(s)	222, 762
TspGWI	ACGGA	1 cut(s)	566
TspRI	CASTG	2 cut(s)	298, 629
VpaK11BI	GGWCC	1 cut(s)	175
XagI	CCTNNNNNAGG	1 cut(s)	650
XapI	RAATTY	1 cut(s)	112
XbaI	TCTAGA	1 cut(s)	770
XspI	CTAG	2 cut(s)	128, 771

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.