Rh6AG370900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0008988
Physical Location & Seq
Reverse (-)
56928915 .. 56929175
261 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG370900.1

Sequence Viewer

Length: 261 bp
ATGTTAGACTTCTTGTGGCGACATGAAGAAGGTAGAGTGATCGAGGAGCAATTCCGCAAAACGTATGTAGCTGGTGAGGACCGTGAGGTTAAGAGAAGACTGTCAATGGATCTGGTGGAGACCTTGGAGAAGCCCTTATCATCAAACGATATAGAGTTGTCTCTCAATCAAACTGAAGACCAGTTAGTTACAAGGTTTCCCAGGTTGCTTGATCTTGTTATAGCGGAGGAAAAGAGTACCACTACTGCGCGCGATGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

86

Amino Acids

10.15

Weight (kDa)

4.77

Isoelectric Point (pI)

52.9

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 250, 252
AciI CCGC 2 cut(s) 55, 224
AclWI GGATC 1 cut(s) 117
AcuI CTGAAG 1 cut(s) 195
AfaI GTAC 1 cut(s) 238
AjnI CCWGG 1 cut(s) 200
AluBI AGCT 1 cut(s) 71
AluI AGCT 1 cut(s) 71
Alw26I GTCTC 2 cut(s) 113, 165
AlwI GGATC 1 cut(s) 117
AspLEI GCGC 2 cut(s) 250, 252
AspS9I GGNCC 1 cut(s) 79
AsuHPI GGTGA 1 cut(s) 86
AvaII GGWCC 1 cut(s) 79
BbsI GAAGAC 2 cut(s) 103, 183
BciT130I CCWGG 1 cut(s) 202
BcoDI GTCTC 2 cut(s) 113, 165
Bme1390I CCNGG 1 cut(s) 202
Bme18I GGWCC 1 cut(s) 79
BmgT120I GGNCC 1 cut(s) 79
BmrFI CCNGG 1 cut(s) 202
BpiI GAAGAC 2 cut(s) 103, 183
BsaI GGTCTC 1 cut(s) 113
BsaJI CCNNGG 2 cut(s) 123, 200
Bse1I ACTGG 1 cut(s) 181
BseBI CCWGG 1 cut(s) 202
BseDI CCNNGG 2 cut(s) 123, 200
BseNI ACTGG 1 cut(s) 181
BsePI GCGCGC 1 cut(s) 248
BseRI GAGGAG 1 cut(s) 59
Bsh1236I CGCG 2 cut(s) 250, 252
BsmAI GTCTC 2 cut(s) 113, 165
Bso31I GGTCTC 1 cut(s) 113
Bsp143I GATC 3 cut(s) 39, 109, 211
BspACI CCGC 2 cut(s) 55, 224
BspFNI CGCG 2 cut(s) 250, 252
BspPI GGATC 1 cut(s) 117
BspTNI GGTCTC 1 cut(s) 113
BsrI ACTGG 1 cut(s) 181
BssECI CCNNGG 2 cut(s) 123, 200
BssHII GCGCGC 1 cut(s) 248
BssMI GATC 3 cut(s) 39, 109, 211
BssT1I CCWWGG 1 cut(s) 123
Bst2UI CCWGG 1 cut(s) 202
Bst4CI ACNGT 2 cut(s) 83, 102
BstC8I GCNNGC 1 cut(s) 250
BstFNI CGCG 2 cut(s) 250, 252
BstHHI GCGC 2 cut(s) 250, 252
BstKTI GATC 3 cut(s) 42, 112, 214
BstMAI GTCTC 2 cut(s) 113, 165
BstMBI GATC 3 cut(s) 39, 109, 211
BstNI CCWGG 1 cut(s) 202
BstSCI CCNGG 1 cut(s) 200
BstUI CGCG 2 cut(s) 250, 252
BstV2I GAAGAC 2 cut(s) 103, 183
BstX2I RGATCY 1 cut(s) 109
BstYI RGATCY 1 cut(s) 109
Cac8I GCNNGC 1 cut(s) 250
CfoI GCGC 2 cut(s) 250, 252
Cfr13I GGNCC 1 cut(s) 79
Csp6I GTAC 1 cut(s) 237
CviAII CATG 1 cut(s) 23
CviJI RGCY 2 cut(s) 71, 133
CviKI_1 RGCY 2 cut(s) 71, 133
CviQI GTAC 1 cut(s) 237
DpnI GATC 3 cut(s) 41, 111, 213
DpnII GATC 3 cut(s) 39, 109, 211
Eco130I CCWWGG 1 cut(s) 123
Eco31I GGTCTC 1 cut(s) 113
Eco47I GGWCC 1 cut(s) 79
Eco57I CTGAAG 1 cut(s) 195
EcoRII CCWGG 1 cut(s) 200
EcoT14I CCWWGG 1 cut(s) 123
ErhI CCWWGG 1 cut(s) 123
FaeI CATG 1 cut(s) 26
FaiI YATR 4 cut(s) 24, 66, 152, 221
FatI CATG 1 cut(s) 22
GlaI GCGC 2 cut(s) 249, 251
HhaI GCGC 2 cut(s) 250, 252
Hin1II CATG 1 cut(s) 26
Hin6I GCGC 2 cut(s) 248, 250
HinP1I GCGC 2 cut(s) 248, 250
HphI GGTGA 1 cut(s) 86
HpyAV CCTTC 1 cut(s) 23
HpyCH4III ACNGT 2 cut(s) 83, 102
HpyCH4IV ACGT 1 cut(s) 62
HpySE526I ACGT 1 cut(s) 62
Hsp92II CATG 1 cut(s) 26
HspAI GCGC 2 cut(s) 248, 250
Kzo9I GATC 3 cut(s) 39, 109, 211
LmnI GCTCC 1 cut(s) 46
LpnPI CCDG 5 cut(s) 57, 98, 187, 194, 214
MaeII ACGT 1 cut(s) 62
MaeIII GTNAC 1 cut(s) 187
MalI GATC 3 cut(s) 41, 111, 213
MboI GATC 3 cut(s) 39, 109, 211
MboII GAAGA 3 cut(s) 38, 108, 188
MflI RGATCY 1 cut(s) 109
MluCI AATT 1 cut(s) 50
MnlI CCTC 4 cut(s) 37, 70, 79, 220
MseI TTAA 2 cut(s) 90, 259
MspR9I CCNGG 1 cut(s) 202
MvaI CCWGG 1 cut(s) 202
MvnI CGCG 2 cut(s) 250, 252
NdeII GATC 3 cut(s) 39, 109, 211
NlaIII CATG 1 cut(s) 26
PauI GCGCGC 1 cut(s) 248
Psp6I CCWGG 1 cut(s) 200
PspGI CCWGG 1 cut(s) 200
PspPI GGNCC 1 cut(s) 79
PsuI RGATCY 1 cut(s) 109
PteI GCGCGC 1 cut(s) 248
RsaI GTAC 1 cut(s) 238
RsaNI GTAC 1 cut(s) 237
SaqAI TTAA 2 cut(s) 90, 259
Sau3AI GATC 3 cut(s) 39, 109, 211
Sau96I GGNCC 1 cut(s) 79
ScrFI CCNGG 1 cut(s) 202
SetI ASST 7 cut(s) 34, 65, 73, 90, 125, 197, 206
SinI GGWCC 1 cut(s) 79
Sse9I AATT 1 cut(s) 50
SsiI CCGC 2 cut(s) 55, 224
StyD4I CCNGG 1 cut(s) 200
StyI CCWWGG 1 cut(s) 123
TaaI ACNGT 2 cut(s) 83, 102
TaiI ACGT 1 cut(s) 65
TaqI TCGA 1 cut(s) 42
TasI AATT 1 cut(s) 50
Tru1I TTAA 2 cut(s) 90, 259
Tru9I TTAA 2 cut(s) 90, 259
TspDTI ATGAA 1 cut(s) 39
VpaK11BI GGWCC 1 cut(s) 79
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.