Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0008988

Physical Location & Seq

Genomic Coordinates Reverse (-)

40597294 .. 40598425

Gene Structure 1132 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0258300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 723 bp

ATGGCTATTCAGCTTATTAAACATACAGCAATGTTGTTGAGTGGACGAGATCTCTGCCTTGGGGTTGTTTTCTTGTTATTGCTTAGTTGTGGATTCAGTTCTGGCGGTGAGAGTGATATCAACTGCTTGAAAAGTATAAAAGCATCACTTGAGGACCCTTTGGATATGTTAACCTCTTCATGGGATTTCAGCAACATCACCGAAGGTTCCATCTGTAGCTTTCTGGGAGTGGGGTGTTGGCATCCTAATGAGAGCAAAGTGCTGAATATCAACCTTTCGAATTTGGGACTCAAGGGCCAATTTCCTCGCGGCATAGCCAATTGTACAAGCTTGACAGGCTTAGATCTTTCGAGCAACAAGTTGAGCGGATCCCTTCCTGCTGATATCAGTAGAATCATTCCATTCAGTACGTTGCTTGCCCTCTCGTATAACAACTTCTCCGGGACAATCCCAGCCAGTATTTCCAACTGCACTTATCTGAATGTCCTCAAGCTTGATCACAACCAGCTATCGGGTCAGATTCCCGGAGAAATTGGCCAACTTTCCAGGCTTAAAACATTCAGTGTGGCCAACAATCTTCTGCATGGGCCAGTCCCAGACTTCGTTGTGGCTTCGGTTACAGCGGACAGTTACGCAAACAATCCCGGACTGTGCGGCGGTCCTCTGAAGAGTTGCAGGTCATCCGTGGAGAAGTCGTTGAATTGTTCAAGTCCACCACTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009909 GO:0009910 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0048519 GO:0048580 GO:0048581 GO:0048831 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051239 GO:0051241 GO:0051716 GO:0060089 GO:0060860 GO:0060862 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564 GO:2000026 GO:2000241 GO:2000242

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

240

Amino Acids

25.34

Weight (kDa)

6.39

Isoelectric Point (pI)

36.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008988)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g27310
rosa_laevigata	RLG00000011726 RLG00000011727 RLG00000030282
rosa_multiflora	Rmu_sc0003139.1_g000047
rosa_rugosa	Rorug06G0258300 Rorug06G0258400 Rorug06G0258500 Rorug06G0258600
rosa_samantha	Rh1DG298000 Rh6AG370900 Rh6BG378400 Rh6BG378500 Rh6BG378600 Rh6BG378700 Rh6CG384000 Rh6CG384100 Rh6DG370900 Rh6DG371000 Rh6DG371100 Rh6DG371200 Rh6DG371300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	666
AccBSI	CCGCTC	1 cut(s)	366
AccII	CGCG	1 cut(s)	309
AciI	CCGC	6 cut(s)	105, 309, 366, 623, 654, 657
AclWI	GGATC	2 cut(s)	363, 376
AcoI	YGGCCR	2 cut(s)	535, 567
AcsI	RAATTY	1 cut(s)	280
AcuI	CTGAAG	1 cut(s)	686
AfaI	GTAC	2 cut(s)	325, 409
AfiI	CCNNNNNNNGG	2 cut(s)	180, 511
AgsI	TTSAA	3 cut(s)	130, 700, 708
AjnI	CCWGG	1 cut(s)	545
AluBI	AGCT	5 cut(s)	13, 219, 330, 493, 508
AluI	AGCT	5 cut(s)	13, 219, 330, 493, 508
AlwI	GGATC	2 cut(s)	363, 376
AoxI	GGCC	4 cut(s)	295, 535, 567, 587
ApoI	RAATTY	1 cut(s)	280
AspS9I	GGNCC	4 cut(s)	154, 295, 587, 659
AsuC2I	CCSGG	3 cut(s)	442, 525, 645
AsuHPI	GGTGA	2 cut(s)	119, 190
AsuII	TTCGAA	1 cut(s)	278
AvaII	GGWCC	2 cut(s)	154, 659
BalI	TGGCCA	2 cut(s)	537, 569
BamHI	GGATCC	1 cut(s)	368
BarI	GAAGNNNNNNTAC	2 cut(s)	419, 451
BccI	CCATC	1 cut(s)	218
BcgI	CGANNNNNNTGC	2 cut(s)	36, 70
BciT130I	CCWGG	1 cut(s)	547
BclI	TGATCA	1 cut(s)	496
BcnI	CCSGG	3 cut(s)	442, 525, 645
BfaI	CTAG	1 cut(s)	721
BfmI	CTRYAG	1 cut(s)	214
BfuAI	ACCTGC	1 cut(s)	666
BglII	AGATCT	2 cut(s)	49, 343
BisI	GCNGC	2 cut(s)	310, 655
BlsI	GCNGC	2 cut(s)	311, 656
Bme1390I	CCNGG	4 cut(s)	442, 525, 547, 645
Bme18I	GGWCC	2 cut(s)	154, 659
BmgT120I	GGNCC	4 cut(s)	154, 295, 587, 659
BmiI	GGNNCC	3 cut(s)	156, 208, 370
BmrFI	CCNGG	4 cut(s)	442, 525, 547, 645
BmsI	GCATC	2 cut(s)	152, 250
Bpu14I	TTCGAA	1 cut(s)	278
BpuEI	CTTGAG	3 cut(s)	170, 275, 473
BpuMI	CCSGG	3 cut(s)	442, 525, 645
BsaJI	CCNNGG	2 cut(s)	58, 684
BsaXI	ACNNNNNCTCC	4 cut(s)	422, 452, 680, 710
Bsc4I	CCNNNNNNNGG	2 cut(s)	180, 511
Bse1I	ACTGG	2 cut(s)	456, 590
Bse3DI	GCAATG	1 cut(s)	36
BseBI	CCWGG	1 cut(s)	547
BseDI	CCNNGG	2 cut(s)	58, 684
BseGI	GGATG	2 cut(s)	241, 680
BseLI	CCNNNNNNNGG	2 cut(s)	180, 511
BseMI	GCAATG	1 cut(s)	36
BseNI	ACTGG	2 cut(s)	456, 590
BseYI	CCCAGC	1 cut(s)	451
BsgI	GTGCAG	1 cut(s)	454
Bsh1236I	CGCG	1 cut(s)	309
BshFI	GGCC	4 cut(s)	297, 537, 569, 589
BsiSI	CCGG	3 cut(s)	441, 525, 645
BslFI	GGGAC	3 cut(s)	300, 457, 578
BslI	CCNNNNNNNGG	2 cut(s)	180, 511
BsmFI	GGGAC	3 cut(s)	300, 457, 578
BsnI	GGCC	4 cut(s)	297, 537, 569, 589
Bsp119I	TTCGAA	1 cut(s)	278
Bsp1407I	TGTACA	1 cut(s)	323
Bsp143I	GATC	4 cut(s)	49, 343, 368, 496
BspACI	CCGC	6 cut(s)	105, 309, 366, 623, 654, 657
BspANI	GGCC	4 cut(s)	297, 537, 569, 589
BspFNI	CGCG	1 cut(s)	309
BspLI	GGNNCC	3 cut(s)	156, 208, 370
BspMI	ACCTGC	1 cut(s)	666
BspPI	GGATC	2 cut(s)	363, 376
BspT104I	TTCGAA	1 cut(s)	278
BsrBI	CCGCTC	1 cut(s)	366
BsrDI	GCAATG	1 cut(s)	36
BsrGI	TGTACA	1 cut(s)	323
BsrI	ACTGG	2 cut(s)	456, 590
BssECI	CCNNGG	2 cut(s)	58, 684
BssMI	GATC	4 cut(s)	49, 343, 368, 496
BssT1I	CCWWGG	1 cut(s)	58
Bst2UI	CCWGG	1 cut(s)	547
Bst4CI	ACNGT	2 cut(s)	629, 651
Bst6I	CTCTTC	2 cut(s)	181, 662
BstAUI	TGTACA	1 cut(s)	323
BstBI	TTCGAA	1 cut(s)	278
BstC8I	GCNNGC	1 cut(s)	417
BstDEI	CTNAG	2 cut(s)	83, 340
BstDSI	CCRYGG	1 cut(s)	684
BstF5I	GGATG	2 cut(s)	241, 680
BstFNI	CGCG	1 cut(s)	309
BstKTI	GATC	4 cut(s)	52, 346, 371, 499
BstMBI	GATC	4 cut(s)	49, 343, 368, 496
BstMWI	GCNNNNNNNGC	1 cut(s)	336
BstNI	CCWGG	1 cut(s)	547
BstSCI	CCNGG	4 cut(s)	440, 523, 545, 643
BstSFI	CTRYAG	1 cut(s)	214
BstUI	CGCG	1 cut(s)	309
BstX2I	RGATCY	3 cut(s)	49, 343, 368
BstYI	RGATCY	3 cut(s)	49, 343, 368
BsuRI	GGCC	4 cut(s)	297, 537, 569, 589
BtgI	CCRYGG	1 cut(s)	684
BtsCI	GGATG	2 cut(s)	241, 680
BtsIMutI	CAGTG	1 cut(s)	568
BveI	ACCTGC	1 cut(s)	666
Cac8I	GCNNGC	1 cut(s)	417
Cfr13I	GGNCC	4 cut(s)	154, 295, 587, 659
Csp6I	GTAC	2 cut(s)	324, 408
CviAII	CATG	2 cut(s)	180, 584
CviQI	GTAC	2 cut(s)	324, 408
DdeI	CTNAG	2 cut(s)	83, 340
DpnI	GATC	4 cut(s)	51, 345, 370, 498
DpnII	GATC	4 cut(s)	49, 343, 368, 496
EaeI	YGGCCR	2 cut(s)	535, 567
Eam1104I	CTCTTC	2 cut(s)	181, 662
EarI	CTCTTC	2 cut(s)	181, 662
Eco130I	CCWWGG	1 cut(s)	58
Eco32I	GATATC	2 cut(s)	118, 385
Eco47I	GGWCC	2 cut(s)	154, 659
Eco57I	CTGAAG	1 cut(s)	686
EcoO109I	RGGNCCY	1 cut(s)	154
EcoRII	CCWGG	1 cut(s)	545
EcoRV	GATATC	2 cut(s)	118, 385
EcoT14I	CCWWGG	1 cut(s)	58
ErhI	CCWWGG	1 cut(s)	58
FaeI	CATG	2 cut(s)	183, 587
FaiI	YATR	7 cut(s)	24, 137, 167, 181, 314, 429, 585
FalI	AAGNNNNNCTT	2 cut(s)	132, 164
FaqI	GGGAC	3 cut(s)	300, 457, 578
FatI	CATG	2 cut(s)	179, 583
FbaI	TGATCA	1 cut(s)	496
Fnu4HI	GCNGC	2 cut(s)	310, 655
FokI	GGATG	2 cut(s)	228, 667
Fsp4HI	GCNGC	2 cut(s)	310, 655
FspBI	CTAG	1 cut(s)	721
GluI	GCNGC	2 cut(s)	310, 655
GsaI	CCCAGC	1 cut(s)	455
HaeIII	GGCC	4 cut(s)	297, 537, 569, 589
HapII	CCGG	3 cut(s)	441, 525, 645
Hin1II	CATG	2 cut(s)	183, 587
HincII	GTYRAC	1 cut(s)	171
HindII	GTYRAC	1 cut(s)	171
HindIII	AAGCTT	2 cut(s)	328, 491
HinfI	GANTC	4 cut(s)	93, 288, 393, 520
HpaI	GTTAAC	1 cut(s)	171
HpaII	CCGG	3 cut(s)	441, 525, 645
HphI	GGTGA	2 cut(s)	119, 190
Hpy166II	GTNNAC	3 cut(s)	44, 171, 713
Hpy188I	TCNGA	3 cut(s)	480, 519, 666
Hpy8I	GTNNAC	3 cut(s)	44, 171, 713
HpyAV	CCTTC	2 cut(s)	197, 383
HpyCH4III	ACNGT	2 cut(s)	629, 651
HpyCH4IV	ACGT	1 cut(s)	410
HpyCH4V	TGCA	3 cut(s)	471, 583, 675
HpyF10VI	GCNNNNNNNGC	1 cut(s)	336
HpyF3I	CTNAG	2 cut(s)	83, 340
HpySE526I	ACGT	1 cut(s)	410
Hsp92II	CATG	2 cut(s)	183, 587
Ksp22I	TGATCA	1 cut(s)	496
KspAI	GTTAAC	1 cut(s)	171
Kzo9I	GATC	4 cut(s)	49, 343, 368, 496
LweI	GCATC	2 cut(s)	152, 250
MaeI	CTAG	1 cut(s)	721
MaeII	ACGT	1 cut(s)	410
MaeIII	GTNAC	2 cut(s)	616, 629
MalI	GATC	4 cut(s)	51, 345, 370, 498
MbiI	CCGCTC	1 cut(s)	366
MboI	GATC	4 cut(s)	49, 343, 368, 496
MboII	GAAGA	3 cut(s)	168, 569, 679
MfeI	CAATTG	1 cut(s)	319
MflI	RGATCY	3 cut(s)	49, 343, 368
MlsI	TGGCCA	2 cut(s)	537, 569
MluCI	AATT	5 cut(s)	280, 299, 319, 531, 700
MluNI	TGGCCA	2 cut(s)	537, 569
MlyI	GAGTC	1 cut(s)	282
MmeI	TCCRAC	1 cut(s)	489
MnlI	CCTC	6 cut(s)	145, 184, 315, 431, 497, 672
Mox20I	TGGCCA	2 cut(s)	537, 569
MscI	TGGCCA	2 cut(s)	537, 569
MseI	TTAA	3 cut(s)	18, 170, 552
MslI	CAYNNNNRTG	1 cut(s)	246
Msp20I	TGGCCA	2 cut(s)	537, 569
MspA1I	CMGCKG	1 cut(s)	623
MspI	CCGG	3 cut(s)	441, 525, 645
MspR9I	CCNGG	4 cut(s)	442, 525, 547, 645
MunI	CAATTG	1 cut(s)	319
MvaI	CCWGG	1 cut(s)	547
MvnI	CGCG	1 cut(s)	309
MwoI	GCNNNNNNNGC	1 cut(s)	336
NciI	CCSGG	3 cut(s)	442, 525, 645
NdeII	GATC	4 cut(s)	49, 343, 368, 496
NlaIII	CATG	2 cut(s)	183, 587
NlaIV	GGNNCC	3 cut(s)	156, 208, 370
NspV	TTCGAA	1 cut(s)	278
PfeI	GAWTC	3 cut(s)	93, 393, 520
PfoI	TCCNGGA	3 cut(s)	440, 523, 643
PkrI	GCNGC	2 cut(s)	311, 656
PleI	GAGTC	1 cut(s)	282
PpsI	GAGTC	1 cut(s)	282
PpuMI	RGGWCCY	1 cut(s)	154
Psp5II	RGGWCCY	1 cut(s)	154
Psp6I	CCWGG	1 cut(s)	545
PspFI	CCCAGC	1 cut(s)	451
PspGI	CCWGG	1 cut(s)	545
PspN4I	GGNNCC	3 cut(s)	156, 208, 370
PspPI	GGNCC	4 cut(s)	154, 295, 587, 659
PspPPI	RGGWCCY	1 cut(s)	154
PsuI	RGATCY	3 cut(s)	49, 343, 368
RsaI	GTAC	2 cut(s)	325, 409
RsaNI	GTAC	2 cut(s)	324, 408
RseI	CAYNNNNRTG	1 cut(s)	246
SaqAI	TTAA	3 cut(s)	18, 170, 552
SatI	GCNGC	2 cut(s)	310, 655
Sau3AI	GATC	4 cut(s)	49, 343, 368, 496
Sau96I	GGNCC	4 cut(s)	154, 295, 587, 659
SchI	GAGTC	1 cut(s)	282
ScrFI	CCNGG	4 cut(s)	442, 525, 547, 645
SfaNI	GCATC	2 cut(s)	152, 250
SfcI	CTRYAG	1 cut(s)	214
SfuI	TTCGAA	1 cut(s)	278
SinI	GGWCC	2 cut(s)	154, 659
SmiMI	CAYNNNNRTG	1 cut(s)	246
SmlI	CTYRAG	3 cut(s)	149, 290, 488
SmoI	CTYRAG	3 cut(s)	149, 290, 488
Sse9I	AATT	5 cut(s)	280, 299, 319, 531, 700
SsiI	CCGC	6 cut(s)	105, 309, 366, 623, 654, 657
SspMI	CTAG	1 cut(s)	721
StyD4I	CCNGG	4 cut(s)	440, 523, 545, 643
StyI	CCWWGG	1 cut(s)	58
TaaI	ACNGT	2 cut(s)	629, 651
TaiI	ACGT	1 cut(s)	413
TaqI	TCGA	2 cut(s)	278, 350
TasI	AATT	5 cut(s)	280, 299, 319, 531, 700
TatI	WGTACW	1 cut(s)	323
TauI	GCSGC	2 cut(s)	312, 657
TfiI	GAWTC	3 cut(s)	93, 393, 520
Tru1I	TTAA	3 cut(s)	18, 170, 552
Tru9I	TTAA	3 cut(s)	18, 170, 552
TscAI	CASTG	1 cut(s)	568
TspDTI	ATGAA	1 cut(s)	168
TspGWI	ACGGA	1 cut(s)	673
TspRI	CASTG	1 cut(s)	568
VpaK11BI	GGWCC	2 cut(s)	154, 659
XapI	RAATTY	1 cut(s)	280
XspI	CTAG	1 cut(s)	721

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.