Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0008988

Physical Location & Seq

Genomic Coordinates Reverse (-)

58985669 .. 58986871

Gene Structure 1203 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000030282

Sequence Viewer

CDS Protein Promoter (2k)

Length: 609 bp

ATGCTAGGAAACTTGCACGTGTGGTTCTGGCCGGGCTTTCCTGAGGAGGGACAATTTTACATATTTCTGCCAAATCCTTCTATTATTAAGTACGGCTGGTACCATTTCGATGTGTTTCGATTCTTCCGAACAAGAGAGGGCGATCGATCTACATCTTTCCCCATAGCCCTGGGGCTATGTCTCGATCTCCTACGTGCGAAATCTGAGGGACTAGTTCCTATGGGGATTCCCCTTGGTCTAATTCCGCGACTTAGGACGAAAGATGAGTCGGCGTGGCGTAAAGTGAAGATTGAGGGAAGTAGAGAAAAATTCCCTTCTGGGGTATTCCGAAGCGTCACACGTTCTCCAGGTCCGAAAGGATCCAGTGCCCAACTACCGACTCCTCCCGGAATTGAGTTATCGGAGCCGAGCCAGGAATGGCCGTTAGTGGACACCCACCACTTTTCACCGGTTAGAGAGGCCCTCTTTAATACATTAAGAAAAGATGTTCACAGGGGCCAGAAAGACTCGGTCATAGGAACTTATACCACCTACGCGCTGGTAAACGAAAACCACCTCGACCAAATCAGAGTAAACAACAATGTCAAATCAGGCCACCCCTTGCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0016020 GO:0019866 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko04714 ko04723 ko05012 map00190 map01100 map04714 map04723 map05012

Pfam Domains

Protein Families

Proton_antipo_M

Protein Analysis

203

Amino Acids

22.98

Weight (kDa)

9.44

Isoelectric Point (pI)

45.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008988)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g27310
rosa_laevigata	RLG00000011726 RLG00000011727 RLG00000030282
rosa_multiflora	Rmu_sc0003139.1_g000047
rosa_rugosa	Rorug06G0258300 Rorug06G0258400 Rorug06G0258500 Rorug06G0258600
rosa_samantha	Rh1DG298000 Rh6AG370900 Rh6BG378400 Rh6BG378500 Rh6BG378600 Rh6BG378700 Rh6CG384000 Rh6CG384100 Rh6DG370900 Rh6DG371000 Rh6DG371100 Rh6DG371200 Rh6DG371300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	99
AccB1I	GGYRCC	1 cut(s)	99
AccII	CGCG	2 cut(s)	247, 536
AciI	CCGC	1 cut(s)	245
AclWI	GGATC	2 cut(s)	354, 367
AcoI	YGGCCR	2 cut(s)	29, 419
AcsI	RAATTY	1 cut(s)	308
AcvI	CACGTG	1 cut(s)	19
AfaI	GTAC	2 cut(s)	92, 101
AfiI	CCNNNNNNNGG	2 cut(s)	47, 319
AflIII	ACRYGT	2 cut(s)	18, 338
AgeI	ACCGGT	1 cut(s)	448
AhlI	ACTAGT	1 cut(s)	211
AjnI	CCWGG	3 cut(s)	168, 346, 411
Alw26I	GTCTC	1 cut(s)	185
AlwI	GGATC	2 cut(s)	354, 367
AoxI	GGCC	5 cut(s)	29, 419, 459, 496, 592
ApoI	RAATTY	1 cut(s)	308
ArsI	GACNNNNNNTTYG	2 cut(s)	251, 283
AsiGI	ACCGGT	1 cut(s)	448
Asp718I	GGTACC	1 cut(s)	99
AspLEI	GCGC	1 cut(s)	538
AspS9I	GGNCC	3 cut(s)	350, 460, 496
AsuC2I	CCSGG	2 cut(s)	33, 387
AsuHPI	GGTGA	1 cut(s)	438
AvaII	GGWCC	1 cut(s)	350
AxyI	CCTNAGG	1 cut(s)	42
BaeGI	GKGCMC	1 cut(s)	370
BamHI	GGATCC	1 cut(s)	359
BanI	GGYRCC	1 cut(s)	99
BbrPI	CACGTG	1 cut(s)	19
BceAI	ACGGC	2 cut(s)	109, 406
BciT130I	CCWGG	3 cut(s)	170, 348, 413
BcnI	CCSGG	2 cut(s)	33, 387
BcoDI	GTCTC	1 cut(s)	185
BcuI	ACTAGT	1 cut(s)	211
BfaI	CTAG	2 cut(s)	5, 212
Bme1390I	CCNGG	5 cut(s)	33, 170, 348, 387, 413
Bme18I	GGWCC	1 cut(s)	350
BmgT120I	GGNCC	3 cut(s)	350, 460, 496
BmiI	GGNNCC	4 cut(s)	101, 361, 405, 497
BmrFI	CCNGG	5 cut(s)	33, 170, 348, 387, 413
BplI	GAGNNNNNCTC	2 cut(s)	447, 479
BpmI	CTGGAG	1 cut(s)	330
BpuMI	CCSGG	2 cut(s)	33, 387
Bsa29I	ATCGAT	1 cut(s)	145
BsaAI	YACGTR	2 cut(s)	19, 194
BsaBI	GATNNNNATC	1 cut(s)	151
BsaJI	CCNNGG	3 cut(s)	168, 169, 232
BsaWI	WCCGGW	1 cut(s)	448
BsaXI	ACNNNNNCTCC	2 cut(s)	328, 358
Bsc4I	CCNNNNNNNGG	2 cut(s)	47, 319
Bse118I	RCCGGY	1 cut(s)	448
Bse1I	ACTGG	1 cut(s)	363
Bse21I	CCTNAGG	1 cut(s)	42
Bse8I	GATNNNNATC	1 cut(s)	151
BseBI	CCWGG	3 cut(s)	170, 348, 413
BseCI	ATCGAT	1 cut(s)	145
BseDI	CCNNGG	3 cut(s)	168, 169, 232
BseJI	GATNNNNATC	1 cut(s)	151
BseLI	CCNNNNNNNGG	2 cut(s)	47, 319
BseMII	CTCAG	2 cut(s)	33, 195
BseNI	ACTGG	1 cut(s)	363
BseRI	GAGGAG	2 cut(s)	59, 372
BseSI	GKGCMC	1 cut(s)	370
Bsh1236I	CGCG	2 cut(s)	247, 536
Bsh1285I	CGRYCG	1 cut(s)	145
BshFI	GGCC	5 cut(s)	31, 421, 461, 498, 594
BshNI	GGYRCC	1 cut(s)	99
BshTI	ACCGGT	1 cut(s)	448
BshVI	ATCGAT	1 cut(s)	145
BsiEI	CGRYCG	1 cut(s)	145
BsiSI	CCGG	3 cut(s)	32, 387, 449
BslFI	GGGAC	2 cut(s)	63, 222
BslI	CCNNNNNNNGG	2 cut(s)	47, 319
BsmAI	GTCTC	1 cut(s)	185
BsmFI	GGGAC	2 cut(s)	63, 222
BsnI	GGCC	5 cut(s)	31, 421, 461, 498, 594
Bsp1286I	GDGCHC	1 cut(s)	370
Bsp143I	GATC	4 cut(s)	142, 146, 184, 359
BspACI	CCGC	1 cut(s)	245
BspANI	GGCC	5 cut(s)	31, 421, 461, 498, 594
BspCNI	CTCAG	2 cut(s)	34, 196
BspDI	ATCGAT	1 cut(s)	145
BspFNI	CGCG	2 cut(s)	247, 536
BspLI	GGNNCC	4 cut(s)	101, 361, 405, 497
BspPI	GGATC	2 cut(s)	354, 367
BspT107I	GGYRCC	1 cut(s)	99
BsrFI	RCCGGY	1 cut(s)	448
BsrI	ACTGG	1 cut(s)	363
BssAI	RCCGGY	1 cut(s)	448
BssECI	CCNNGG	3 cut(s)	168, 169, 232
BssMI	GATC	4 cut(s)	142, 146, 184, 359
BssT1I	CCWWGG	1 cut(s)	232
Bst2UI	CCWGG	3 cut(s)	170, 348, 413
BstBAI	YACGTR	2 cut(s)	19, 194
BstDEI	CTNAG	3 cut(s)	42, 204, 251
BstFNI	CGCG	2 cut(s)	247, 536
BstHHI	GCGC	1 cut(s)	538
BstKTI	GATC	4 cut(s)	145, 149, 187, 362
BstMAI	GTCTC	1 cut(s)	185
BstMBI	GATC	4 cut(s)	142, 146, 184, 359
BstMCI	CGRYCG	1 cut(s)	145
BstNI	CCWGG	3 cut(s)	170, 348, 413
BstSCI	CCNGG	5 cut(s)	31, 168, 346, 385, 411
BstSLI	GKGCMC	1 cut(s)	370
BstUI	CGCG	2 cut(s)	247, 536
BstX2I	RGATCY	1 cut(s)	359
BstXI	CCANNNNNNTGG	1 cut(s)	169
BstYI	RGATCY	1 cut(s)	359
Bsu15I	ATCGAT	1 cut(s)	145
Bsu36I	CCTNAGG	1 cut(s)	42
BsuRI	GGCC	5 cut(s)	31, 421, 461, 498, 594
BsuTUI	ATCGAT	1 cut(s)	145
BtsIMutI	CAGTG	1 cut(s)	370
CfoI	GCGC	1 cut(s)	538
Cfr10I	RCCGGY	1 cut(s)	448
Cfr13I	GGNCC	3 cut(s)	350, 460, 496
ClaI	ATCGAT	1 cut(s)	145
CseI	GACGC	1 cut(s)	322
Csp6I	GTAC	2 cut(s)	91, 100
CspAI	ACCGGT	1 cut(s)	448
CviQI	GTAC	2 cut(s)	91, 100
DdeI	CTNAG	3 cut(s)	42, 204, 251
DpnI	GATC	4 cut(s)	144, 148, 186, 361
DpnII	GATC	4 cut(s)	142, 146, 184, 359
EaeI	YGGCCR	2 cut(s)	29, 419
Eco130I	CCWWGG	1 cut(s)	232
Eco47I	GGWCC	1 cut(s)	350
Eco72I	CACGTG	1 cut(s)	19
Eco81I	CCTNAGG	1 cut(s)	42
EcoO109I	RGGNCCY	1 cut(s)	460
EcoRII	CCWGG	3 cut(s)	168, 346, 411
EcoT14I	CCWWGG	1 cut(s)	232
ErhI	CCWWGG	1 cut(s)	232
FaiI	YATR	6 cut(s)	62, 164, 178, 221, 515, 525
FaqI	GGGAC	2 cut(s)	63, 222
FspBI	CTAG	2 cut(s)	5, 212
GlaI	GCGC	1 cut(s)	537
GsuI	CTGGAG	1 cut(s)	330
HaeIII	GGCC	5 cut(s)	31, 421, 461, 498, 594
HapII	CCGG	3 cut(s)	32, 387, 449
HgaI	GACGC	1 cut(s)	322
HhaI	GCGC	1 cut(s)	538
Hin6I	GCGC	1 cut(s)	536
HinP1I	GCGC	1 cut(s)	536
HinfI	GANTC	5 cut(s)	120, 226, 266, 379, 506
HpaII	CCGG	3 cut(s)	32, 387, 449
HphI	GGTGA	1 cut(s)	438
Hpy166II	GTNNAC	4 cut(s)	430, 490, 544, 574
Hpy188I	TCNGA	6 cut(s)	128, 205, 329, 354, 403, 569
Hpy188III	TCNNGA	2 cut(s)	41, 182
Hpy8I	GTNNAC	4 cut(s)	430, 490, 544, 574
HpyAV	CCTTC	2 cut(s)	87, 324
HpyCH4IV	ACGT	3 cut(s)	18, 193, 340
HpyCH4V	TGCA	1 cut(s)	16
HpyF3I	CTNAG	3 cut(s)	42, 204, 251
HpySE526I	ACGT	3 cut(s)	18, 193, 340
HspAI	GCGC	1 cut(s)	536
KpnI	GGTACC	1 cut(s)	103
Kzo9I	GATC	4 cut(s)	142, 146, 184, 359
LmnI	GCTCC	1 cut(s)	403
MaeI	CTAG	2 cut(s)	5, 212
MaeII	ACGT	3 cut(s)	18, 193, 340
MaeIII	GTNAC	1 cut(s)	334
MalI	GATC	4 cut(s)	144, 148, 186, 361
MboI	GATC	4 cut(s)	142, 146, 184, 359
MboII	GAAGA	2 cut(s)	115, 298
MflI	RGATCY	1 cut(s)	359
MhlI	GDGCHC	1 cut(s)	370
MluCI	AATT	4 cut(s)	53, 240, 308, 390
MlyI	GAGTC	3 cut(s)	275, 373, 500
MnlI	CCTC	9 cut(s)	37, 40, 130, 199, 286, 393, 451, 473, 566
MseI	TTAA	3 cut(s)	87, 468, 476
MslI	CAYNNNNRTG	1 cut(s)	108
MspI	CCGG	3 cut(s)	32, 387, 449
MspR9I	CCNGG	5 cut(s)	33, 170, 348, 387, 413
MvaI	CCWGG	3 cut(s)	170, 348, 413
MvnI	CGCG	2 cut(s)	247, 536
NciI	CCSGG	2 cut(s)	33, 387
NdeII	GATC	4 cut(s)	142, 146, 184, 359
NlaIV	GGNNCC	4 cut(s)	101, 361, 405, 497
NmeAIII	GCCGAG	1 cut(s)	432
NmuCI	GTSAC	1 cut(s)	334
PasI	CCCWGGG	1 cut(s)	169
PcsI	WCGNNNNNNNCGW	1 cut(s)	124
PfeI	GAWTC	2 cut(s)	120, 226
PflFI	GACNNNGTC	1 cut(s)	509
PfoI	TCCNGGA	1 cut(s)	385
PinAI	ACCGGT	1 cut(s)	448
Ple19I	CGATCG	1 cut(s)	145
PleI	GAGTC	3 cut(s)	274, 373, 500
PmaCI	CACGTG	1 cut(s)	19
PmlI	CACGTG	1 cut(s)	19
PpsI	GAGTC	3 cut(s)	274, 373, 500
Ppu21I	YACGTR	2 cut(s)	19, 194
Psp6I	CCWGG	3 cut(s)	168, 346, 411
PspCI	CACGTG	1 cut(s)	19
PspGI	CCWGG	3 cut(s)	168, 346, 411
PspN4I	GGNNCC	4 cut(s)	101, 361, 405, 497
PspPI	GGNCC	3 cut(s)	350, 460, 496
PsuI	RGATCY	1 cut(s)	359
PsyI	GACNNNGTC	1 cut(s)	509
PvuI	CGATCG	1 cut(s)	145
RsaI	GTAC	2 cut(s)	92, 101
RsaNI	GTAC	2 cut(s)	91, 100
RseI	CAYNNNNRTG	1 cut(s)	108
SaqAI	TTAA	3 cut(s)	87, 468, 476
Sau3AI	GATC	4 cut(s)	142, 146, 184, 359
Sau96I	GGNCC	3 cut(s)	350, 460, 496
SchI	GAGTC	3 cut(s)	275, 373, 500
ScrFI	CCNGG	5 cut(s)	33, 170, 348, 387, 413
SduI	GDGCHC	1 cut(s)	370
SetI	ASST	6 cut(s)	21, 196, 343, 352, 533, 558
SinI	GGWCC	1 cut(s)	350
SmiMI	CAYNNNNRTG	1 cut(s)	108
SpeI	ACTAGT	1 cut(s)	211
Sse9I	AATT	4 cut(s)	53, 240, 308, 390
SsiI	CCGC	1 cut(s)	245
SspMI	CTAG	2 cut(s)	5, 212
StyD4I	CCNGG	5 cut(s)	31, 168, 346, 385, 411
StyI	CCWWGG	1 cut(s)	232
TaiI	ACGT	3 cut(s)	21, 196, 343
TaqI	TCGA	5 cut(s)	108, 118, 145, 183, 558
TaqII	GACCGA	1 cut(s)	499
TasI	AATT	4 cut(s)	53, 240, 308, 390
TfiI	GAWTC	2 cut(s)	120, 226
Tru1I	TTAA	3 cut(s)	87, 468, 476
Tru9I	TTAA	3 cut(s)	87, 468, 476
TscAI	CASTG	1 cut(s)	370
TseFI	GTSAC	1 cut(s)	334
Tsp45I	GTSAC	1 cut(s)	334
TspRI	CASTG	1 cut(s)	370
Tth111I	GACNNNGTC	1 cut(s)	509
VpaK11BI	GGWCC	1 cut(s)	350
XapI	RAATTY	1 cut(s)	308
XcmI	CCANNNNNNNNNTGG	1 cut(s)	535
XspI	CTAG	2 cut(s)	5, 212

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.