Ribonuclease H
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| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_2g27310 |
| rosa_laevigata | RLG00000011726 RLG00000011727 RLG00000030282 |
| rosa_multiflora | Rmu_sc0003139.1_g000047 |
| rosa_rugosa | Rorug06G0258300 Rorug06G0258400 Rorug06G0258500 Rorug06G0258600 |
| rosa_samantha | Rh1DG298000 Rh6AG370900 Rh6BG378400 Rh6BG378500 Rh6BG378600 Rh6BG378700 Rh6CG384000 Rh6CG384100 Rh6DG370900 Rh6DG371000 Rh6DG371100 Rh6DG371200 Rh6DG371300 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 26 |
| AclWI | GGATC | 4 cut(s) | 65, 78, 221, 274 |
| AcoI | YGGCCR | 1 cut(s) | 261 |
| AgsI | TTSAA | 1 cut(s) | 54 |
| AjnI | CCWGG | 2 cut(s) | 236, 395 |
| AlwI | GGATC | 4 cut(s) | 65, 78, 221, 274 |
| AoxI | GGCC | 1 cut(s) | 261 |
| AsuII | TTCGAA | 1 cut(s) | 106 |
| BamHI | GGATCC | 1 cut(s) | 70 |
| BbsI | GAAGAC | 2 cut(s) | 25, 274 |
| BccI | CCATC | 2 cut(s) | 188, 194 |
| BciT130I | CCWGG | 2 cut(s) | 238, 397 |
| BfaI | CTAG | 1 cut(s) | 360 |
| Bme1390I | CCNGG | 2 cut(s) | 238, 397 |
| BmiI | GGNNCC | 1 cut(s) | 72 |
| BmrFI | CCNGG | 2 cut(s) | 238, 397 |
| BpiI | GAAGAC | 2 cut(s) | 25, 274 |
| Bpu14I | TTCGAA | 1 cut(s) | 106 |
| BsaJI | CCNNGG | 2 cut(s) | 208, 258 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 189, 219 |
| Bse1I | ACTGG | 1 cut(s) | 283 |
| Bse3DI | GCAATG | 1 cut(s) | 196 |
| BseBI | CCWGG | 2 cut(s) | 238, 397 |
| BseDI | CCNNGG | 2 cut(s) | 208, 258 |
| BseMI | GCAATG | 1 cut(s) | 196 |
| BseNI | ACTGG | 1 cut(s) | 283 |
| BshFI | GGCC | 1 cut(s) | 263 |
| BsiSI | CCGG | 1 cut(s) | 264 |
| BsnI | GGCC | 1 cut(s) | 263 |
| Bsp119I | TTCGAA | 1 cut(s) | 106 |
| Bsp143I | GATC | 3 cut(s) | 70, 213, 279 |
| Bsp19I | CCATGG | 1 cut(s) | 258 |
| BspANI | GGCC | 1 cut(s) | 263 |
| BspHI | TCATGA | 1 cut(s) | 13 |
| BspLI | GGNNCC | 1 cut(s) | 72 |
| BspPI | GGATC | 4 cut(s) | 65, 78, 221, 274 |
| BspQI | GCTCTTC | 1 cut(s) | 236 |
| BspT104I | TTCGAA | 1 cut(s) | 106 |
| BsrDI | GCAATG | 1 cut(s) | 196 |
| BsrI | ACTGG | 1 cut(s) | 283 |
| BssECI | CCNNGG | 2 cut(s) | 208, 258 |
| BssMI | GATC | 3 cut(s) | 70, 213, 279 |
| BssT1I | CCWWGG | 2 cut(s) | 208, 258 |
| Bst2UI | CCWGG | 2 cut(s) | 238, 397 |
| Bst4CI | ACNGT | 2 cut(s) | 229, 343 |
| Bst6I | CTCTTC | 1 cut(s) | 236 |
| BstBI | TTCGAA | 1 cut(s) | 106 |
| BstDSI | CCRYGG | 1 cut(s) | 258 |
| BstKTI | GATC | 3 cut(s) | 73, 216, 282 |
| BstMBI | GATC | 3 cut(s) | 70, 213, 279 |
| BstNI | CCWGG | 2 cut(s) | 238, 397 |
| BstSCI | CCNGG | 2 cut(s) | 236, 395 |
| BstV2I | GAAGAC | 2 cut(s) | 25, 274 |
| BstX2I | RGATCY | 1 cut(s) | 70 |
| BstYI | RGATCY | 1 cut(s) | 70 |
| BsuRI | GGCC | 1 cut(s) | 263 |
| BtgI | CCRYGG | 1 cut(s) | 258 |
| CciI | TCATGA | 1 cut(s) | 13 |
| CviAII | CATG | 2 cut(s) | 14, 259 |
| CviJI | RGCY | 1 cut(s) | 263 |
| CviKI_1 | RGCY | 1 cut(s) | 263 |
| DpnI | GATC | 3 cut(s) | 72, 215, 281 |
| DpnII | GATC | 3 cut(s) | 70, 213, 279 |
| EaeI | YGGCCR | 1 cut(s) | 261 |
| Eam1104I | CTCTTC | 1 cut(s) | 236 |
| EarI | CTCTTC | 1 cut(s) | 236 |
| Eco130I | CCWWGG | 2 cut(s) | 208, 258 |
| EcoRII | CCWGG | 2 cut(s) | 236, 395 |
| EcoT14I | CCWWGG | 2 cut(s) | 208, 258 |
| ErhI | CCWWGG | 2 cut(s) | 208, 258 |
| FaeI | CATG | 2 cut(s) | 17, 262 |
| FatI | CATG | 2 cut(s) | 13, 258 |
| FauNDI | CATATG | 1 cut(s) | 185 |
| FspBI | CTAG | 1 cut(s) | 360 |
| HaeIII | GGCC | 1 cut(s) | 263 |
| HapII | CCGG | 1 cut(s) | 264 |
| Hin1II | CATG | 2 cut(s) | 17, 262 |
| HinfI | GANTC | 2 cut(s) | 204, 353 |
| HpaII | CCGG | 1 cut(s) | 264 |
| Hpy188III | TCNNGA | 2 cut(s) | 14, 37 |
| HpyAV | CCTTC | 1 cut(s) | 60 |
| HpyCH4III | ACNGT | 2 cut(s) | 229, 343 |
| HpyCH4V | TGCA | 1 cut(s) | 189 |
| Hsp92II | CATG | 2 cut(s) | 17, 262 |
| Kzo9I | GATC | 3 cut(s) | 70, 213, 279 |
| LguI | GCTCTTC | 1 cut(s) | 236 |
| LpnPI | CCDG | 6 cut(s) | 22, 223, 250, 277, 296, 382 |
| MaeI | CTAG | 1 cut(s) | 360 |
| MaeIII | GTNAC | 1 cut(s) | 289 |
| MalI | GATC | 3 cut(s) | 72, 215, 281 |
| MboI | GATC | 3 cut(s) | 70, 213, 279 |
| MboII | GAAGA | 6 cut(s) | 25, 140, 253, 279, 288, 396 |
| MflI | RGATCY | 1 cut(s) | 70 |
| MluCI | AATT | 3 cut(s) | 54, 102, 222 |
| MlyI | GAGTC | 2 cut(s) | 213, 362 |
| MnlI | CCTC | 3 cut(s) | 60, 242, 378 |
| MseI | TTAA | 1 cut(s) | 156 |
| MspI | CCGG | 1 cut(s) | 264 |
| MspR9I | CCNGG | 2 cut(s) | 238, 397 |
| MvaI | CCWGG | 2 cut(s) | 238, 397 |
| NcoI | CCATGG | 1 cut(s) | 258 |
| NdeI | CATATG | 1 cut(s) | 185 |
| NdeII | GATC | 3 cut(s) | 70, 213, 279 |
| NlaIII | CATG | 2 cut(s) | 17, 262 |
| NlaIV | GGNNCC | 1 cut(s) | 72 |
| NspV | TTCGAA | 1 cut(s) | 106 |
| PagI | TCATGA | 1 cut(s) | 13 |
| PciSI | GCTCTTC | 1 cut(s) | 236 |
| PfoI | TCCNGGA | 1 cut(s) | 236 |
| PleI | GAGTC | 2 cut(s) | 212, 361 |
| PpsI | GAGTC | 2 cut(s) | 212, 361 |
| PsiI | TTATAA | 1 cut(s) | 26 |
| Psp6I | CCWGG | 2 cut(s) | 236, 395 |
| PspGI | CCWGG | 2 cut(s) | 236, 395 |
| PspN4I | GGNNCC | 1 cut(s) | 72 |
| PsuI | RGATCY | 1 cut(s) | 70 |
| SapI | GCTCTTC | 1 cut(s) | 236 |
| SaqAI | TTAA | 1 cut(s) | 156 |
| Sau3AI | GATC | 3 cut(s) | 70, 213, 279 |
| SchI | GAGTC | 2 cut(s) | 213, 362 |
| ScrFI | CCNGG | 2 cut(s) | 238, 397 |
| SetI | ASST | 3 cut(s) | 127, 253, 311 |
| SfuI | TTCGAA | 1 cut(s) | 106 |
| Sse9I | AATT | 3 cut(s) | 54, 102, 222 |
| SspI | AATATT | 1 cut(s) | 95 |
| SspMI | CTAG | 1 cut(s) | 360 |
| StyD4I | CCNGG | 2 cut(s) | 236, 395 |
| StyI | CCWWGG | 2 cut(s) | 208, 258 |
| TaaI | ACNGT | 2 cut(s) | 229, 343 |
| TaqI | TCGA | 1 cut(s) | 106 |
| TasI | AATT | 3 cut(s) | 54, 102, 222 |
| Tru1I | TTAA | 1 cut(s) | 156 |
| Tru9I | TTAA | 1 cut(s) | 156 |
| TspDTI | ATGAA | 1 cut(s) | 396 |
| XspI | CTAG | 1 cut(s) | 360 |