Rh6DG371100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0008988
Physical Location & Seq
Reverse (-)
56682260 .. 56682586
327 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG371100.1

Sequence Viewer

Length: 327 bp
ATGACAAAGGACTTCGAAACTTGTGATTGCCGGCAGCAAATCCAACTGGTAGATGAAATGGACAGGAGACACTCCGCTATAGCAGAGAAGTTAACGCAGCTTAGTAGAGAGAAACTTTCGGAGATGTTAGTGAAGCAGGAAGGTTTTTCCGAGGCCTTGTTGTCATTAAGAAATACAGAGACGACGCTAACAGTGCCTGATCGAATGGAAGAGGAAGAAGCGGAGGTAATGTATGCTTCATTAGAATCAGCATATCAGAGCCTGTTTTGGAGTATTAAACTAATGGAGGACCGGAGTGCAACCATTTTTAAACCCCTCGATCGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

108

Amino Acids

12.64

Weight (kDa)

4.67

Isoelectric Point (pI)

50.47

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 75, 221
AfiI CCNNNNNNNGG 1 cut(s) 321
AluBI AGCT 1 cut(s) 100
AluI AGCT 1 cut(s) 100
Alw26I GTCTC 2 cut(s) 61, 173
AlwNI CAGNNNCTG 2 cut(s) 197, 262
AoxI GGCC 1 cut(s) 153
ApeKI GCWGC 2 cut(s) 34, 97
AspS9I GGNCC 1 cut(s) 289
AsuII TTCGAA 1 cut(s) 15
AvaII GGWCC 1 cut(s) 289
BbvI GCAGC 2 cut(s) 46, 109
BcoDI GTCTC 2 cut(s) 61, 173
BfmI CTRYAG 1 cut(s) 78
BisI GCNGC 2 cut(s) 35, 98
BlsI GCNGC 2 cut(s) 36, 99
Bme18I GGWCC 1 cut(s) 289
BmgT120I GGNCC 1 cut(s) 289
Bpu14I TTCGAA 1 cut(s) 15
BsaJI CCNNGG 1 cut(s) 150
BsaWI WCCGGW 1 cut(s) 291
BsaXI ACNNNNNCTCC 2 cut(s) 215, 245
Bsc4I CCNNNNNNNGG 1 cut(s) 321
Bse118I RCCGGY 1 cut(s) 30
Bse1I ACTGG 1 cut(s) 51
BseDI CCNNGG 1 cut(s) 150
BseLI CCNNNNNNNGG 1 cut(s) 321
BseNI ACTGG 1 cut(s) 51
BseXI GCAGC 2 cut(s) 46, 109
Bsh1285I CGRYCG 1 cut(s) 322
BshFI GGCC 1 cut(s) 155
BsiEI CGRYCG 1 cut(s) 322
BsiSI CCGG 2 cut(s) 31, 292
BslI CCNNNNNNNGG 1 cut(s) 321
BsmAI GTCTC 2 cut(s) 61, 173
BsmBI CGTCTC 1 cut(s) 173
BsnI GGCC 1 cut(s) 155
Bsp119I TTCGAA 1 cut(s) 15
Bsp143I GATC 2 cut(s) 199, 319
BspACI CCGC 2 cut(s) 75, 221
BspANI GGCC 1 cut(s) 155
BspT104I TTCGAA 1 cut(s) 15
BsrFI RCCGGY 1 cut(s) 30
BsrI ACTGG 1 cut(s) 51
BssAI RCCGGY 1 cut(s) 30
BssECI CCNNGG 1 cut(s) 150
BssMI GATC 2 cut(s) 199, 319
Bst4CI ACNGT 1 cut(s) 193
Bst6I CTCTTC 1 cut(s) 204
BstBI TTCGAA 1 cut(s) 15
BstC8I GCNNGC 1 cut(s) 32
BstDEI CTNAG 1 cut(s) 101
BstKTI GATC 2 cut(s) 202, 322
BstMAI GTCTC 2 cut(s) 61, 173
BstMBI GATC 2 cut(s) 199, 319
BstMCI CGRYCG 1 cut(s) 322
BstMWI GCNNNNNNNGC 1 cut(s) 193
BstSFI CTRYAG 1 cut(s) 78
BstV1I GCAGC 2 cut(s) 46, 109
BsuRI GGCC 1 cut(s) 155
BtsIMutI CAGTG 1 cut(s) 198
Cac8I GCNNGC 1 cut(s) 32
CaiI CAGNNNCTG 2 cut(s) 197, 262
Cfr10I RCCGGY 1 cut(s) 30
Cfr13I GGNCC 1 cut(s) 289
CseI GACGC 1 cut(s) 193
CviJI RGCY 3 cut(s) 100, 155, 261
CviKI_1 RGCY 3 cut(s) 100, 155, 261
DdeI CTNAG 1 cut(s) 101
DpnI GATC 2 cut(s) 201, 321
DpnII GATC 2 cut(s) 199, 319
DraI TTTAAA 1 cut(s) 310
Eam1104I CTCTTC 1 cut(s) 204
EarI CTCTTC 1 cut(s) 204
Eco147I AGGCCT 1 cut(s) 155
Eco47I GGWCC 1 cut(s) 289
Esp3I CGTCTC 1 cut(s) 173
FaiI YATR 3 cut(s) 80, 234, 253
Fnu4HI GCNGC 2 cut(s) 35, 98
Fsp4HI GCNGC 2 cut(s) 35, 98
GluI GCNGC 2 cut(s) 35, 98
HaeIII GGCC 1 cut(s) 155
HapII CCGG 2 cut(s) 31, 292
HgaI GACGC 1 cut(s) 193
HincII GTYRAC 1 cut(s) 93
HindII GTYRAC 1 cut(s) 93
HinfI GANTC 1 cut(s) 245
HpaI GTTAAC 1 cut(s) 93
HpaII CCGG 2 cut(s) 31, 292
Hpy166II GTNNAC 1 cut(s) 93
Hpy188I TCNGA 3 cut(s) 121, 151, 258
Hpy8I GTNNAC 1 cut(s) 93
Hpy99I CGWCG 1 cut(s) 187
HpyAV CCTTC 1 cut(s) 134
HpyCH4III ACNGT 1 cut(s) 193
HpyCH4V TGCA 1 cut(s) 299
HpyF10VI GCNNNNNNNGC 1 cut(s) 193
HpyF3I CTNAG 1 cut(s) 101
KroI GCCGGC 1 cut(s) 30
KroNI GCCGGC 1 cut(s) 32
KspAI GTTAAC 1 cut(s) 93
Kzo9I GATC 2 cut(s) 199, 319
LpnPI CCDG 7 cut(s) 32, 44, 49, 122, 210, 275, 305
Lsp1109I GCAGC 2 cut(s) 46, 109
MalI GATC 2 cut(s) 201, 321
MboI GATC 2 cut(s) 199, 319
MboII GAAGA 2 cut(s) 221, 227
MmeI TCCRAC 1 cut(s) 67
MnlI CCTC 5 cut(s) 145, 205, 217, 280, 326
MroNI GCCGGC 1 cut(s) 30
MseI TTAA 4 cut(s) 92, 167, 276, 309
MspI CCGG 2 cut(s) 31, 292
MwoI GCNNNNNNNGC 1 cut(s) 193
NaeI GCCGGC 1 cut(s) 32
NdeII GATC 2 cut(s) 199, 319
NgoMIV GCCGGC 1 cut(s) 30
NspV TTCGAA 1 cut(s) 15
PceI AGGCCT 1 cut(s) 155
PdiI GCCGGC 1 cut(s) 32
PfeI GAWTC 1 cut(s) 245
PkrI GCNGC 2 cut(s) 36, 99
Ple19I CGATCG 1 cut(s) 322
PspPI GGNCC 1 cut(s) 289
PstNI CAGNNNCTG 2 cut(s) 197, 262
PvuI CGATCG 1 cut(s) 322
SaqAI TTAA 4 cut(s) 92, 167, 276, 309
SatI GCNGC 2 cut(s) 35, 98
Sau3AI GATC 2 cut(s) 199, 319
Sau96I GGNCC 1 cut(s) 289
SetI ASST 3 cut(s) 102, 145, 228
SfcI CTRYAG 1 cut(s) 78
SfuI TTCGAA 1 cut(s) 15
SinI GGWCC 1 cut(s) 289
SseBI AGGCCT 1 cut(s) 155
SsiI CCGC 2 cut(s) 75, 221
StuI AGGCCT 1 cut(s) 155
TaaI ACNGT 1 cut(s) 193
TaqI TCGA 3 cut(s) 15, 202, 318
TfiI GAWTC 1 cut(s) 245
Tru1I TTAA 4 cut(s) 92, 167, 276, 309
Tru9I TTAA 4 cut(s) 92, 167, 276, 309
TscAI CASTG 1 cut(s) 198
TseI GCWGC 2 cut(s) 34, 97
TspDTI ATGAA 2 cut(s) 69, 228
TspRI CASTG 1 cut(s) 198
VpaK11BI GGWCC 1 cut(s) 289
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.