RLG00000011727

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0008988
Physical Location & Seq
Forward (+)
12218450 .. 12220852
2403 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000011727

Sequence Viewer

Length: 519 bp
ATGGAAGAGGAAGAAGCGGAGGTAATGTATGCTTCATTAGAATCAGCATATCAGAGCCTGTTTTGGAGTATTAAACTAATGGAGGACCGGAGTGCAACCATTTTTAAACCGCTCCTTGGTGATCTCATATTGACACACTGCAAATCAGGAAAACCAGAGAGGAATGATGTCAAGTGGCGCTCCAAGGAGGAACTAGAAAGTTTCAGGGTAGAAATGAAGGGAATGGTGCAGAGATGGTTCGAGAGTGCTGCAAGGTATCTTAGAAGAATGTTAGACTTCTTGTGGCGACATGAAGAAGGTAGAGTGATCGAGGAGCAATTCCGCGAACTCACGTATGTGGCTGGTGAGGACCGTGAGTCCTTAAAACCCTTCGCCGAGAAGATAGAGGTATTGGATCTCGAAGAGGAGGAAGTAGAGGATATTATAGCACTAATGGAGAAGGGTTTTGAGCTTGTCCCGAGTTCTCCTGGTGTCGTGCTGCGTGGCAGCTACTACAAAAAGAATGTATACATGAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

173

Amino Acids

20.39

Weight (kDa)

4.86

Isoelectric Point (pI)

66.66

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 112
AccI GTMKAC 1 cut(s) 507
AccII CGCG 1 cut(s) 324
AciI CCGC 3 cut(s) 17, 110, 322
AclWI GGATC 1 cut(s) 402
AfiI CCNNNNNNNGG 1 cut(s) 116
AhdI GACNNNNNGTC 1 cut(s) 355
AjnI CCWGG 1 cut(s) 466
AleI CACNNNNGTG 1 cut(s) 335
AluBI AGCT 2 cut(s) 451, 489
AluI AGCT 2 cut(s) 451, 489
AlwI GGATC 1 cut(s) 402
AlwNI CAGNNNCTG 1 cut(s) 58
Ama87I CYCGRG 1 cut(s) 457
ApeKI GCWGC 3 cut(s) 248, 478, 486
AspLEI GCGC 1 cut(s) 180
AspS9I GGNCC 2 cut(s) 85, 349
AsuHPI GGTGA 2 cut(s) 131, 356
AvaI CYCGRG 1 cut(s) 457
AvaII GGWCC 2 cut(s) 85, 349
BbvI GCAGC 3 cut(s) 235, 465, 498
BccI CCATC 1 cut(s) 228
BcgI CGANNNNNNTGC 2 cut(s) 230, 264
BciT130I CCWGG 1 cut(s) 468
BfaI CTAG 2 cut(s) 194, 517
BfoI RGCGCY 1 cut(s) 181
BisI GCNGC 3 cut(s) 249, 479, 487
BlsI GCNGC 3 cut(s) 250, 480, 488
Bme1390I CCNGG 1 cut(s) 468
Bme18I GGWCC 2 cut(s) 85, 349
BmeRI GACNNNNNGTC 1 cut(s) 355
BmeT110I CYCGRG 1 cut(s) 457
BmgT120I GGNCC 2 cut(s) 85, 349
BmrFI CCNGG 1 cut(s) 468
BsaAI YACGTR 1 cut(s) 333
BsaJI CCNNGG 2 cut(s) 115, 183
BsaWI WCCGGW 1 cut(s) 87
BsaXI ACNNNNNCTCC 2 cut(s) 11, 41
Bsc4I CCNNNNNNNGG 1 cut(s) 116
BseBI CCWGG 1 cut(s) 468
BseDI CCNNGG 2 cut(s) 115, 183
BseLI CCNNNNNNNGG 1 cut(s) 116
BseRI GAGGAG 2 cut(s) 326, 419
BseXI GCAGC 3 cut(s) 235, 465, 498
BsgI GTGCAG 1 cut(s) 248
Bsh1236I CGCG 1 cut(s) 324
BsiHKCI CYCGRG 1 cut(s) 457
BsiSI CCGG 1 cut(s) 88
BslFI GGGAC 1 cut(s) 440
BslI CCNNNNNNNGG 1 cut(s) 116
BsmFI GGGAC 1 cut(s) 440
BsoBI CYCGRG 1 cut(s) 457
Bsp143I GATC 3 cut(s) 121, 306, 394
BspACI CCGC 3 cut(s) 17, 110, 322
BspFNI CGCG 1 cut(s) 324
BspPI GGATC 1 cut(s) 402
BsrBI CCGCTC 1 cut(s) 112
BssECI CCNNGG 2 cut(s) 115, 183
BssMI GATC 3 cut(s) 121, 306, 394
BssNAI GTATAC 1 cut(s) 508
BssT1I CCWWGG 2 cut(s) 115, 183
Bst1107I GTATAC 1 cut(s) 508
Bst2UI CCWGG 1 cut(s) 468
Bst4CI ACNGT 1 cut(s) 353
Bst6I CTCTTC 1 cut(s) 396
BstBAI YACGTR 1 cut(s) 333
BstDEI CTNAG 1 cut(s) 260
BstFNI CGCG 1 cut(s) 324
BstH2I RGCGCY 1 cut(s) 181
BstHHI GCGC 1 cut(s) 180
BstKTI GATC 3 cut(s) 124, 309, 397
BstMBI GATC 3 cut(s) 121, 306, 394
BstNI CCWGG 1 cut(s) 468
BstSCI CCNGG 1 cut(s) 466
BstUI CGCG 1 cut(s) 324
BstV1I GCAGC 3 cut(s) 235, 465, 498
BstX2I RGATCY 1 cut(s) 394
BstYI RGATCY 1 cut(s) 394
BstZ17I GTATAC 1 cut(s) 508
BtsI GCAGTG 1 cut(s) 136
BtsIMutI CAGTG 1 cut(s) 136
CaiI CAGNNNCTG 1 cut(s) 58
CfoI GCGC 1 cut(s) 180
Cfr13I GGNCC 2 cut(s) 85, 349
CviAII CATG 2 cut(s) 290, 511
CviJI RGCY 4 cut(s) 57, 341, 451, 489
CviKI_1 RGCY 4 cut(s) 57, 341, 451, 489
DdeI CTNAG 1 cut(s) 260
DpnI GATC 3 cut(s) 123, 308, 396
DpnII GATC 3 cut(s) 121, 306, 394
DraI TTTAAA 1 cut(s) 106
DriI GACNNNNNGTC 1 cut(s) 355
Eam1104I CTCTTC 1 cut(s) 396
Eam1105I GACNNNNNGTC 1 cut(s) 355
EarI CTCTTC 1 cut(s) 396
Eco130I CCWWGG 2 cut(s) 115, 183
Eco47I GGWCC 2 cut(s) 85, 349
Eco88I CYCGRG 1 cut(s) 457
EcoRII CCWGG 1 cut(s) 466
EcoT14I CCWWGG 2 cut(s) 115, 183
ErhI CCWWGG 2 cut(s) 115, 183
FaeI CATG 2 cut(s) 293, 514
FaiI YATR 8 cut(s) 30, 49, 128, 291, 336, 425, 508, 512
FaqI GGGAC 1 cut(s) 440
FatI CATG 2 cut(s) 289, 510
FblI GTMKAC 1 cut(s) 507
Fnu4HI GCNGC 3 cut(s) 249, 479, 487
Fsp4HI GCNGC 3 cut(s) 249, 479, 487
FspBI CTAG 2 cut(s) 194, 517
GlaI GCGC 1 cut(s) 179
GluI GCNGC 3 cut(s) 249, 479, 487
HaeII RGCGCY 1 cut(s) 181
HapII CCGG 1 cut(s) 88
HhaI GCGC 1 cut(s) 180
Hin1II CATG 2 cut(s) 293, 514
Hin6I GCGC 1 cut(s) 178
HinP1I GCGC 1 cut(s) 178
HinfI GANTC 2 cut(s) 41, 356
HpaII CCGG 1 cut(s) 88
HphI GGTGA 2 cut(s) 131, 356
Hpy166II GTNNAC 1 cut(s) 508
Hpy188I TCNGA 1 cut(s) 54
Hpy188III TCNNGA 4 cut(s) 147, 241, 398, 457
Hpy8I GTNNAC 1 cut(s) 508
HpyAV CCTTC 4 cut(s) 211, 290, 379, 433
HpyCH4III ACNGT 1 cut(s) 353
HpyCH4IV ACGT 1 cut(s) 332
HpyCH4V TGCA 4 cut(s) 95, 141, 229, 251
HpyF3I CTNAG 1 cut(s) 260
HpySE526I ACGT 1 cut(s) 332
Hsp92II CATG 2 cut(s) 293, 514
HspAI GCGC 1 cut(s) 178
Kzo9I GATC 3 cut(s) 121, 306, 394
LmnI GCTCC 3 cut(s) 117, 185, 313
LpnPI CCDG 8 cut(s) 71, 101, 132, 168, 190, 327, 453, 480
Lsp1109I GCAGC 3 cut(s) 235, 465, 498
MaeI CTAG 2 cut(s) 194, 517
MaeII ACGT 1 cut(s) 332
MalI GATC 3 cut(s) 123, 308, 396
MbiI CCGCTC 1 cut(s) 112
MboI GATC 3 cut(s) 121, 306, 394
MboII GAAGA 6 cut(s) 17, 23, 276, 305, 391, 413
MflI RGATCY 1 cut(s) 394
MluCI AATT 1 cut(s) 317
MlyI GAGTC 1 cut(s) 365
MseI TTAA 3 cut(s) 72, 105, 362
MslI CAYNNNNRTG 1 cut(s) 335
MspI CCGG 1 cut(s) 88
MspR9I CCNGG 1 cut(s) 468
MvaI CCWGG 1 cut(s) 468
MvnI CGCG 1 cut(s) 324
NdeII GATC 3 cut(s) 121, 306, 394
NlaIII CATG 2 cut(s) 293, 514
NmeAIII GCCGAG 1 cut(s) 400
OliI CACNNNNGTG 1 cut(s) 335
PfeI GAWTC 1 cut(s) 41
PkrI GCNGC 3 cut(s) 250, 480, 488
PleI GAGTC 1 cut(s) 364
PpsI GAGTC 1 cut(s) 364
Ppu21I YACGTR 1 cut(s) 333
Psp6I CCWGG 1 cut(s) 466
PspGI CCWGG 1 cut(s) 466
PspPI GGNCC 2 cut(s) 85, 349
PstNI CAGNNNCTG 1 cut(s) 58
PsuI RGATCY 1 cut(s) 394
RseI CAYNNNNRTG 1 cut(s) 335
SaqAI TTAA 3 cut(s) 72, 105, 362
SatI GCNGC 3 cut(s) 249, 479, 487
Sau3AI GATC 3 cut(s) 121, 306, 394
Sau96I GGNCC 2 cut(s) 85, 349
SchI GAGTC 1 cut(s) 365
ScrFI CCNGG 1 cut(s) 468
SetI ASST 7 cut(s) 24, 257, 301, 335, 390, 453, 491
SinI GGWCC 2 cut(s) 85, 349
SmiMI CAYNNNNRTG 1 cut(s) 335
Sse9I AATT 1 cut(s) 317
SsiI CCGC 3 cut(s) 17, 110, 322
SspMI CTAG 2 cut(s) 194, 517
StyD4I CCNGG 1 cut(s) 466
StyI CCWWGG 2 cut(s) 115, 183
TaaI ACNGT 1 cut(s) 353
TaiI ACGT 1 cut(s) 335
TaqI TCGA 3 cut(s) 240, 309, 399
TasI AATT 1 cut(s) 317
TfiI GAWTC 1 cut(s) 41
Tru1I TTAA 3 cut(s) 72, 105, 362
Tru9I TTAA 3 cut(s) 72, 105, 362
TscAI CASTG 1 cut(s) 143
TseI GCWGC 3 cut(s) 248, 478, 486
TspDTI ATGAA 3 cut(s) 24, 230, 306
TspRI CASTG 1 cut(s) 143
VpaK11BI GGWCC 2 cut(s) 85, 349
XmiI GTMKAC 1 cut(s) 507
XspI CTAG 2 cut(s) 194, 517
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.