Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003139.1

Orthogroup ID

OG0008988

Physical Location & Seq

Genomic Coordinates Reverse (-)

201708 .. 204130

Gene Structure 2423 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003139.1_g000047.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 792 bp

atgttagtgaagcaggaaggtttttccgaggccttgttgtcattaagaaatacagagacgacgctaacagtgcctgatcgaatggaagaggaagaagcggagagcctgttttggagtattaaactaatggaggaccggagtgcaaccatttttaaatccctccttggtgatctcatattgacactctacaaatcaggaaaaccagagaggaatgatgtcaagtggcactccaaggaggaactagaaagtttcagggtagaaatgaagaatggtgcagagatggttcgagagtgctgcaaggttggtgaatgggccagctacaacacaaagtataagtacatcaacgcacttctcggattgaatcaatctatgcggagaatgaaatatgtagagttaaaaaggctcgaagggcatagagctggcaagttatcaaagtcttctaagtttaatgtgtggaagtactgtttctgtaataatgatgatgattacgccgaccaacttgttgaattgaataggtatctcagaagaatgttagacttcttgtggcgacatgaagaaggtagagtgatcgaggagcaattccgcaaactcacgtatgtagctggtgaggaccgtgaggttaagagaagactgtcaatggatctggtggagaccttggagaagcccttatcatcaaacgatgtagagttgtctctcaagcaaactgaagaccagttagttacaaggtttcccaggttgcttgatcttgttatagcggaggaaaagagtaccactactgcgcgcgatgtttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

263

Amino Acids

31.02

Weight (kDa)

5.87

Isoelectric Point (pI)

42.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008988)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g27310
rosa_laevigata	RLG00000011726 RLG00000011727 RLG00000030282
rosa_multiflora	Rmu_sc0003139.1_g000047
rosa_rugosa	Rorug06G0258300 Rorug06G0258400 Rorug06G0258500 Rorug06G0258600
rosa_samantha	Rh1DG298000 Rh6AG370900 Rh6BG378400 Rh6BG378500 Rh6BG378600 Rh6BG378700 Rh6CG384000 Rh6CG384100 Rh6DG370900 Rh6DG371000 Rh6DG371100 Rh6DG371200 Rh6DG371300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	781, 783
AciI	CCGC	4 cut(s)	98, 373, 583, 755
AclWI	GGATC	1 cut(s)	648
AcuI	CTGAAG	1 cut(s)	726
AfaI	GTAC	3 cut(s)	338, 461, 769
AgsI	TTSAA	3 cut(s)	361, 506, 511
AjnI	CCWGG	1 cut(s)	731
AluBI	AGCT	3 cut(s)	318, 419, 602
AluI	AGCT	3 cut(s)	318, 419, 602
Alw26I	GTCTC	3 cut(s)	50, 644, 696
AlwI	GGATC	1 cut(s)	648
AlwNI	CAGNNNCTG	1 cut(s)	74
AoxI	GGCC	2 cut(s)	30, 312
ApeKI	GCWGC	1 cut(s)	294
AspLEI	GCGC	2 cut(s)	781, 783
AspS9I	GGNCC	3 cut(s)	133, 312, 610
AsuHPI	GGTGA	3 cut(s)	179, 317, 617
AvaII	GGWCC	2 cut(s)	133, 610
BbsI	GAAGAC	3 cut(s)	429, 634, 714
BbvI	GCAGC	1 cut(s)	281
BccI	CCATC	1 cut(s)	274
BcgI	CGANNNNNNTGC	2 cut(s)	276, 310
BciT130I	CCWGG	1 cut(s)	733
BcoDI	GTCTC	3 cut(s)	50, 644, 696
BfaI	CTAG	1 cut(s)	242
BisI	GCNGC	1 cut(s)	295
BlsI	GCNGC	1 cut(s)	296
BmcAI	AGTACT	1 cut(s)	461
Bme1390I	CCNGG	1 cut(s)	733
Bme18I	GGWCC	2 cut(s)	133, 610
BmgT120I	GGNCC	3 cut(s)	133, 312, 610
BmrFI	CCNGG	1 cut(s)	733
BpiI	GAAGAC	3 cut(s)	429, 634, 714
BpuEI	CTTGAG	1 cut(s)	680
BsaAI	YACGTR	1 cut(s)	594
BsaI	GGTCTC	1 cut(s)	644
BsaJI	CCNNGG	5 cut(s)	27, 163, 231, 654, 731
BsaWI	WCCGGW	1 cut(s)	135
BsaXI	ACNNNNNCTCC	2 cut(s)	92, 122
Bse1I	ACTGG	1 cut(s)	712
BseBI	CCWGG	1 cut(s)	733
BseDI	CCNNGG	5 cut(s)	27, 163, 231, 654, 731
BseMII	CTCAG	1 cut(s)	535
BseNI	ACTGG	1 cut(s)	712
BsePI	GCGCGC	1 cut(s)	779
BseRI	GAGGAG	1 cut(s)	587
BseXI	GCAGC	1 cut(s)	281
BsgI	GTGCAG	1 cut(s)	294
Bsh1236I	CGCG	2 cut(s)	781, 783
BshFI	GGCC	2 cut(s)	32, 314
BsiSI	CCGG	1 cut(s)	136
BsmAI	GTCTC	3 cut(s)	50, 644, 696
BsmBI	CGTCTC	1 cut(s)	50
BsnI	GGCC	2 cut(s)	32, 314
Bso31I	GGTCTC	1 cut(s)	644
Bsp143I	GATC	5 cut(s)	76, 169, 567, 640, 742
BspACI	CCGC	4 cut(s)	98, 373, 583, 755
BspANI	GGCC	2 cut(s)	32, 314
BspCNI	CTCAG	1 cut(s)	534
BspFNI	CGCG	2 cut(s)	781, 783
BspPI	GGATC	1 cut(s)	648
BspTNI	GGTCTC	1 cut(s)	644
BsrI	ACTGG	1 cut(s)	712
BssECI	CCNNGG	5 cut(s)	27, 163, 231, 654, 731
BssHII	GCGCGC	1 cut(s)	779
BssMI	GATC	5 cut(s)	76, 169, 567, 640, 742
BssT1I	CCWWGG	3 cut(s)	163, 231, 654
Bst2UI	CCWGG	1 cut(s)	733
Bst4CI	ACNGT	4 cut(s)	70, 464, 614, 633
Bst6I	CTCTTC	1 cut(s)	81
BstBAI	YACGTR	1 cut(s)	594
BstC8I	GCNNGC	3 cut(s)	316, 421, 781
BstDEI	CTNAG	2 cut(s)	441, 521
BstFNI	CGCG	2 cut(s)	781, 783
BstHHI	GCGC	2 cut(s)	781, 783
BstKTI	GATC	5 cut(s)	79, 172, 570, 643, 745
BstMAI	GTCTC	3 cut(s)	50, 644, 696
BstMBI	GATC	5 cut(s)	76, 169, 567, 640, 742
BstMWI	GCNNNNNNNGC	2 cut(s)	70, 409
BstNI	CCWGG	1 cut(s)	733
BstSCI	CCNGG	1 cut(s)	731
BstUI	CGCG	2 cut(s)	781, 783
BstV1I	GCAGC	1 cut(s)	281
BstV2I	GAAGAC	3 cut(s)	429, 634, 714
BstX2I	RGATCY	1 cut(s)	640
BstYI	RGATCY	1 cut(s)	640
BsuRI	GGCC	2 cut(s)	32, 314
BtsIMutI	CAGTG	1 cut(s)	75
Cac8I	GCNNGC	3 cut(s)	316, 421, 781
CaiI	CAGNNNCTG	1 cut(s)	74
CfoI	GCGC	2 cut(s)	781, 783
Cfr13I	GGNCC	3 cut(s)	133, 312, 610
CseI	GACGC	1 cut(s)	70
Csp6I	GTAC	3 cut(s)	337, 460, 768
CviAII	CATG	1 cut(s)	551
CviJI	RGCY	8 cut(s)	32, 105, 314, 318, 403, 419, 602, 664
CviKI_1	RGCY	8 cut(s)	32, 105, 314, 318, 403, 419, 602, 664
CviQI	GTAC	3 cut(s)	337, 460, 768
DdeI	CTNAG	2 cut(s)	441, 521
DpnI	GATC	5 cut(s)	78, 171, 569, 642, 744
DpnII	GATC	5 cut(s)	76, 169, 567, 640, 742
DraI	TTTAAA	1 cut(s)	154
Eam1104I	CTCTTC	1 cut(s)	81
EarI	CTCTTC	1 cut(s)	81
Eco130I	CCWWGG	3 cut(s)	163, 231, 654
Eco147I	AGGCCT	1 cut(s)	32
Eco31I	GGTCTC	1 cut(s)	644
Eco47I	GGWCC	2 cut(s)	133, 610
Eco57I	CTGAAG	1 cut(s)	726
EcoRII	CCWGG	1 cut(s)	731
EcoT14I	CCWWGG	3 cut(s)	163, 231, 654
ErhI	CCWWGG	3 cut(s)	163, 231, 654
Esp3I	CGTCTC	1 cut(s)	50
FaeI	CATG	1 cut(s)	554
FaiI	YATR	8 cut(s)	176, 333, 371, 387, 414, 552, 597, 752
FatI	CATG	1 cut(s)	550
Fnu4HI	GCNGC	1 cut(s)	295
Fsp4HI	GCNGC	1 cut(s)	295
FspBI	CTAG	1 cut(s)	242
GlaI	GCGC	2 cut(s)	780, 782
GluI	GCNGC	1 cut(s)	295
HaeIII	GGCC	2 cut(s)	32, 314
HapII	CCGG	1 cut(s)	136
HgaI	GACGC	1 cut(s)	70
HhaI	GCGC	2 cut(s)	781, 783
Hin1II	CATG	1 cut(s)	554
Hin6I	GCGC	2 cut(s)	779, 781
HinP1I	GCGC	2 cut(s)	779, 781
HinfI	GANTC	1 cut(s)	361
HpaII	CCGG	1 cut(s)	136
HphI	GGTGA	3 cut(s)	179, 317, 617
Hpy188I	TCNGA	3 cut(s)	28, 356, 524
Hpy188III	TCNNGA	2 cut(s)	195, 287
Hpy99I	CGWCG	1 cut(s)	64
HpyAV	CCTTC	3 cut(s)	11, 401, 551
HpyCH4III	ACNGT	4 cut(s)	70, 464, 614, 633
HpyCH4IV	ACGT	1 cut(s)	593
HpyCH4V	TGCA	3 cut(s)	143, 275, 297
HpyF10VI	GCNNNNNNNGC	2 cut(s)	70, 409
HpyF3I	CTNAG	2 cut(s)	441, 521
HpySE526I	ACGT	1 cut(s)	593
Hsp92II	CATG	1 cut(s)	554
HspAI	GCGC	2 cut(s)	779, 781
Kzo9I	GATC	5 cut(s)	76, 169, 567, 640, 742
LmnI	GCTCC	1 cut(s)	574
Lsp1109I	GCAGC	1 cut(s)	281
MaeI	CTAG	1 cut(s)	242
MaeII	ACGT	1 cut(s)	593
MaeIII	GTNAC	1 cut(s)	718
MalI	GATC	5 cut(s)	78, 171, 569, 642, 744
MboI	GATC	5 cut(s)	76, 169, 567, 640, 742
MboII	GAAGA	8 cut(s)	98, 104, 277, 429, 537, 566, 639, 719
MflI	RGATCY	1 cut(s)	640
MluCI	AATT	2 cut(s)	506, 578
MseI	TTAA	7 cut(s)	44, 120, 153, 395, 447, 621, 790
MspI	CCGG	1 cut(s)	136
MspR9I	CCNGG	1 cut(s)	733
MvaI	CCWGG	1 cut(s)	733
MvnI	CGCG	2 cut(s)	781, 783
MwoI	GCNNNNNNNGC	2 cut(s)	70, 409
NdeII	GATC	5 cut(s)	76, 169, 567, 640, 742
NlaIII	CATG	1 cut(s)	554
PauI	GCGCGC	1 cut(s)	779
PceI	AGGCCT	1 cut(s)	32
PfeI	GAWTC	1 cut(s)	361
PkrI	GCNGC	1 cut(s)	296
Ppu21I	YACGTR	1 cut(s)	594
Psp6I	CCWGG	1 cut(s)	731
PspGI	CCWGG	1 cut(s)	731
PspPI	GGNCC	3 cut(s)	133, 312, 610
PstNI	CAGNNNCTG	1 cut(s)	74
PsuI	RGATCY	1 cut(s)	640
PteI	GCGCGC	1 cut(s)	779
RsaI	GTAC	3 cut(s)	338, 461, 769
RsaNI	GTAC	3 cut(s)	337, 460, 768
SaqAI	TTAA	7 cut(s)	44, 120, 153, 395, 447, 621, 790
SatI	GCNGC	1 cut(s)	295
Sau3AI	GATC	5 cut(s)	76, 169, 567, 640, 742
Sau96I	GGNCC	3 cut(s)	133, 312, 610
ScaI	AGTACT	1 cut(s)	461
ScrFI	CCNGG	1 cut(s)	733
SinI	GGWCC	2 cut(s)	133, 610
SmlI	CTYRAG	1 cut(s)	695
SmoI	CTYRAG	1 cut(s)	695
Sse9I	AATT	2 cut(s)	506, 578
SseBI	AGGCCT	1 cut(s)	32
SsiI	CCGC	4 cut(s)	98, 373, 583, 755
SspMI	CTAG	1 cut(s)	242
StuI	AGGCCT	1 cut(s)	32
StyD4I	CCNGG	1 cut(s)	731
StyI	CCWWGG	3 cut(s)	163, 231, 654
TaaI	ACNGT	4 cut(s)	70, 464, 614, 633
TaiI	ACGT	1 cut(s)	596
TaqI	TCGA	4 cut(s)	79, 286, 405, 570
TasI	AATT	2 cut(s)	506, 578
TatI	WGTACW	2 cut(s)	336, 459
TfiI	GAWTC	1 cut(s)	361
Tru1I	TTAA	7 cut(s)	44, 120, 153, 395, 447, 621, 790
Tru9I	TTAA	7 cut(s)	44, 120, 153, 395, 447, 621, 790
TscAI	CASTG	1 cut(s)	75
TseI	GCWGC	1 cut(s)	294
TspDTI	ATGAA	3 cut(s)	278, 395, 567
TspRI	CASTG	1 cut(s)	75
VpaK11BI	GGWCC	2 cut(s)	133, 610
XspI	CTAG	1 cut(s)	242
ZrmI	AGTACT	1 cut(s)	461

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.