Rh6CG384100

disease resistance

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0008988
Physical Location & Seq
Reverse (-)
57090619 .. 57091050
432 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG384100.1

Sequence Viewer

Length: 432 bp
ATGGATCTGGTGGAGACCTTGGAAAAGCCCTTATTATCATCAAGTAATGTAGAGTTGCCTCTCAAGCAATCTAAAGAGCAGTTAGTTACAATGTTTCCTAGGTTGCTTGATCTTGTTATAGCGGAGAAAAAGAGTACCACTATTGCGATGTTTAAACCCCTTTTTAGAGATCTAAAATCTACATTGCAGTCCTTATTCCTTAAAACCCATTGCCGAGAAGATAGAGGTATTGGATCTCGCGAAGGAGTAAAGGATATTATAGCACTAATGGAGAAGGGTTTCGAGCTTGTCCCGAGTTCTCCTGGTGTCGTGCTGCGCAACAACTACTACAAAAGGCATGTATACATGAACCAACTTCTTGAACTGAATCATTCTGTTCAGAAACAATTGAGTATACTGAGAAAGCAAATGGCAGTGATCAGCAAGGAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04014 map04014
Pfam Domains
Protein Families
NB-ARC RPW8

Protein Analysis

143

Amino Acids

16.43

Weight (kDa)

9.52

Isoelectric Point (pI)

44.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RPW8 PF05659 31 - 129 5.8e-07 Arabidopsis broad-spectrum mildew resistance protein RPW8
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 317
AccI GTMKAC 2 cut(s) 342, 394
AccII CGCG 1 cut(s) 240
AciI CCGC 1 cut(s) 122
AclWI GGATC 2 cut(s) 12, 241
AfaI GTAC 1 cut(s) 136
AgsI TTSAA 1 cut(s) 362
AjnI CCWGG 1 cut(s) 301
AluBI AGCT 1 cut(s) 286
AluI AGCT 1 cut(s) 286
Alw26I GTCTC 1 cut(s) 8
AlwI GGATC 2 cut(s) 12, 241
Ama87I CYCGRG 1 cut(s) 292
ApeKI GCWGC 1 cut(s) 313
Asp700I GAANNNNTTC 1 cut(s) 278
AspA2I CCTAGG 1 cut(s) 98
AspLEI GCGC 1 cut(s) 318
AvaI CYCGRG 1 cut(s) 292
AvrII CCTAGG 1 cut(s) 98
BbvI GCAGC 1 cut(s) 300
BciT130I CCWGG 1 cut(s) 303
BclI TGATCA 1 cut(s) 417
BcoDI GTCTC 1 cut(s) 8
BfaI CTAG 1 cut(s) 99
BglII AGATCT 1 cut(s) 169
BisI GCNGC 1 cut(s) 314
BlnI CCTAGG 1 cut(s) 98
BlsI GCNGC 1 cut(s) 315
Bme1390I CCNGG 1 cut(s) 303
BmeT110I CYCGRG 1 cut(s) 292
BmrFI CCNGG 1 cut(s) 303
BpuEI CTTGAG 1 cut(s) 47
BsaI GGTCTC 1 cut(s) 8
BsaJI CCNNGG 2 cut(s) 18, 98
Bse3DI GCAATG 2 cut(s) 182, 208
BseBI CCWGG 1 cut(s) 303
BseDI CCNNGG 2 cut(s) 18, 98
BseMI GCAATG 2 cut(s) 182, 208
BseMII CTCAG 1 cut(s) 389
BseXI GCAGC 1 cut(s) 300
Bsh1236I CGCG 1 cut(s) 240
BsiHKCI CYCGRG 1 cut(s) 292
BslFI GGGAC 1 cut(s) 275
BsmAI GTCTC 1 cut(s) 8
BsmFI GGGAC 1 cut(s) 275
Bso31I GGTCTC 1 cut(s) 8
BsoBI CYCGRG 1 cut(s) 292
Bsp143I GATC 5 cut(s) 4, 109, 169, 233, 417
Bsp68I TCGCGA 1 cut(s) 240
BspACI CCGC 1 cut(s) 122
BspCNI CTCAG 1 cut(s) 390
BspFNI CGCG 1 cut(s) 240
BspPI GGATC 2 cut(s) 12, 241
BspTNI GGTCTC 1 cut(s) 8
BsrDI GCAATG 2 cut(s) 182, 208
BssECI CCNNGG 2 cut(s) 18, 98
BssMI GATC 5 cut(s) 4, 109, 169, 233, 417
BssNAI GTATAC 2 cut(s) 343, 395
BssT1I CCWWGG 2 cut(s) 18, 98
Bst1107I GTATAC 2 cut(s) 343, 395
Bst2UI CCWGG 1 cut(s) 303
BstDEI CTNAG 1 cut(s) 398
BstFNI CGCG 1 cut(s) 240
BstHHI GCGC 1 cut(s) 318
BstKTI GATC 5 cut(s) 7, 112, 172, 236, 420
BstMAI GTCTC 1 cut(s) 8
BstMBI GATC 5 cut(s) 4, 109, 169, 233, 417
BstMWI GCNNNNNNNGC 1 cut(s) 64
BstNI CCWGG 1 cut(s) 303
BstNSI RCATGY 1 cut(s) 341
BstSCI CCNGG 1 cut(s) 301
BstUI CGCG 1 cut(s) 240
BstV1I GCAGC 1 cut(s) 300
BstX2I RGATCY 3 cut(s) 4, 169, 233
BstYI RGATCY 3 cut(s) 4, 169, 233
BstZ17I GTATAC 2 cut(s) 343, 395
BtgZI GCGATG 1 cut(s) 161
BtsI GCAGTG 1 cut(s) 420
BtsIMutI CAGTG 1 cut(s) 420
BtuMI TCGCGA 1 cut(s) 240
CfoI GCGC 1 cut(s) 318
Csp6I GTAC 1 cut(s) 135
CviAII CATG 2 cut(s) 338, 346
CviJI RGCY 2 cut(s) 28, 286
CviKI_1 RGCY 2 cut(s) 28, 286
CviQI GTAC 1 cut(s) 135
DdeI CTNAG 1 cut(s) 398
DpnI GATC 5 cut(s) 6, 111, 171, 235, 419
DpnII GATC 5 cut(s) 4, 109, 169, 233, 417
DraI TTTAAA 1 cut(s) 154
Eco130I CCWWGG 2 cut(s) 18, 98
Eco31I GGTCTC 1 cut(s) 8
Eco88I CYCGRG 1 cut(s) 292
EcoRII CCWGG 1 cut(s) 301
EcoT14I CCWWGG 2 cut(s) 18, 98
ErhI CCWWGG 2 cut(s) 18, 98
FaeI CATG 2 cut(s) 341, 349
FaiI YATR 6 cut(s) 119, 260, 339, 343, 347, 395
FaqI GGGAC 1 cut(s) 275
FatI CATG 2 cut(s) 337, 345
FbaI TGATCA 1 cut(s) 417
FblI GTMKAC 2 cut(s) 342, 394
Fnu4HI GCNGC 1 cut(s) 314
Fsp4HI GCNGC 1 cut(s) 314
FspBI CTAG 1 cut(s) 99
FspI TGCGCA 1 cut(s) 317
GlaI GCGC 1 cut(s) 317
GluI GCNGC 1 cut(s) 314
HhaI GCGC 1 cut(s) 318
Hin1II CATG 2 cut(s) 341, 349
Hin6I GCGC 1 cut(s) 316
HinP1I GCGC 1 cut(s) 316
HinfI GANTC 1 cut(s) 367
Hpy166II GTNNAC 2 cut(s) 343, 395
Hpy188I TCNGA 1 cut(s) 381
Hpy188III TCNNGA 3 cut(s) 239, 292, 359
Hpy8I GTNNAC 2 cut(s) 343, 395
HpyAV CCTTC 2 cut(s) 236, 268
HpyCH4V TGCA 1 cut(s) 187
HpyF10VI GCNNNNNNNGC 1 cut(s) 64
HpyF3I CTNAG 1 cut(s) 398
Hsp92II CATG 2 cut(s) 341, 349
HspAI GCGC 1 cut(s) 316
Ksp22I TGATCA 1 cut(s) 417
Kzo9I GATC 5 cut(s) 4, 109, 169, 233, 417
LpnPI CCDG 2 cut(s) 288, 315
Lsp1109I GCAGC 1 cut(s) 300
MaeI CTAG 1 cut(s) 99
MaeIII GTNAC 1 cut(s) 85
MalI GATC 5 cut(s) 6, 111, 171, 235, 419
MboI GATC 5 cut(s) 4, 109, 169, 233, 417
MboII GAAGA 1 cut(s) 230
MfeI CAATTG 1 cut(s) 386
MflI RGATCY 3 cut(s) 4, 169, 233
MluCI AATT 1 cut(s) 386
MnlI CCTC 2 cut(s) 69, 218
MroXI GAANNNNTTC 1 cut(s) 278
MseI TTAA 2 cut(s) 153, 201
MspR9I CCNGG 1 cut(s) 303
MssI GTTTAAAC 1 cut(s) 154
MunI CAATTG 1 cut(s) 386
MvaI CCWGG 1 cut(s) 303
MvnI CGCG 1 cut(s) 240
MwoI GCNNNNNNNGC 1 cut(s) 64
NdeII GATC 5 cut(s) 4, 109, 169, 233, 417
NlaIII CATG 2 cut(s) 341, 349
NmeAIII GCCGAG 1 cut(s) 239
NruI TCGCGA 1 cut(s) 240
NsbI TGCGCA 1 cut(s) 317
NspI RCATGY 1 cut(s) 341
PdmI GAANNNNTTC 1 cut(s) 278
PfeI GAWTC 1 cut(s) 367
PkrI GCNGC 1 cut(s) 315
PmeI GTTTAAAC 1 cut(s) 154
Psp6I CCWGG 1 cut(s) 301
PspGI CCWGG 1 cut(s) 301
PsuI RGATCY 3 cut(s) 4, 169, 233
RruI TCGCGA 1 cut(s) 240
RsaI GTAC 1 cut(s) 136
RsaNI GTAC 1 cut(s) 135
SaqAI TTAA 2 cut(s) 153, 201
SatI GCNGC 1 cut(s) 314
Sau3AI GATC 5 cut(s) 4, 109, 169, 233, 417
ScrFI CCNGG 1 cut(s) 303
SetI ASST 4 cut(s) 20, 104, 229, 288
SmlI CTYRAG 1 cut(s) 62
SmoI CTYRAG 1 cut(s) 62
Sse9I AATT 1 cut(s) 386
SsiI CCGC 1 cut(s) 122
SspMI CTAG 1 cut(s) 99
StyD4I CCNGG 1 cut(s) 301
StyI CCWWGG 2 cut(s) 18, 98
TaqI TCGA 1 cut(s) 282
TasI AATT 1 cut(s) 386
TfiI GAWTC 1 cut(s) 367
Tru1I TTAA 2 cut(s) 153, 201
Tru9I TTAA 2 cut(s) 153, 201
TscAI CASTG 1 cut(s) 420
TseI GCWGC 1 cut(s) 313
TspDTI ATGAA 1 cut(s) 362
TspRI CASTG 1 cut(s) 420
XceI RCATGY 1 cut(s) 341
XmaJI CCTAGG 1 cut(s) 98
XmiI GTMKAC 2 cut(s) 342, 394
XmnI GAANNNNTTC 1 cut(s) 278
XspI CTAG 1 cut(s) 99
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.