Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0008988

Physical Location & Seq

Genomic Coordinates Forward (+)

40603989 .. 40604569

Gene Structure 581 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0258500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 405 bp

ATGGGTTCTTCCCAGAAAAGCTCCCAATGGAGGAGCGTCTTCGACGGCGTGAAACTCAAGACCATCCCATCAATGCCAGAAGCTCTAATGGCCGAGATCAACACTGCAATTTACAATCTTGAATACGCACGGGCCTCTGTTCTTCTCGAATCGACGTCCCCTTCTTCTTCCTCTTCTTCAATCTCGAAGAATGAGAGCTCTGCTCAACCTCAGTTTGATGCCCGGAAAGCGGATCAGGCTTACAAGGCAGGCTGTGCTGCCTTGGCTGCTGGGAAGCTCGATGAGGCTCTTCTGTCATTGAATGTTTCGCTTTCGAAATGCCCACCTGATCAGACCTCTGCCGTTGCGAAGCTTCATTCGCTTATCTCTCTCACATCTCAGCAGCTGCACAAACCCACCAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04014 map04014

Pfam Domains

Protein Families

NB-ARC RPW8

Protein Analysis

134

Amino Acids

14.22

Weight (kDa)

8.58

Isoelectric Point (pI)

49.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008988)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g27310
rosa_laevigata	RLG00000011726 RLG00000011727 RLG00000030282
rosa_multiflora	Rmu_sc0003139.1_g000047
rosa_rugosa	Rorug06G0258300 Rorug06G0258400 Rorug06G0258500 Rorug06G0258600
rosa_samantha	Rh1DG298000 Rh6AG370900 Rh6BG378400 Rh6BG378500 Rh6BG378600 Rh6BG378700 Rh6CG384000 Rh6CG384100 Rh6DG370900 Rh6DG371000 Rh6DG371100 Rh6DG371200 Rh6DG371300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	158
AciI	CCGC	1 cut(s)	230
AclWI	GGATC	1 cut(s)	240
AcoI	YGGCCR	1 cut(s)	90
AcyI	GRCGYC	1 cut(s)	155
AfiI	CCNNNNNNNGG	2 cut(s)	30, 229
AgsI	TTSAA	3 cut(s)	122, 180, 301
AluBI	AGCT	6 cut(s)	21, 83, 198, 277, 352, 385
AluI	AGCT	6 cut(s)	21, 83, 198, 277, 352, 385
Alw21I	GWGCWC	1 cut(s)	200
AlwI	GGATC	1 cut(s)	240
AlwNI	CAGNNNCTG	1 cut(s)	385
AoxI	GGCC	2 cut(s)	90, 132
ApeKI	GCWGC	4 cut(s)	257, 266, 382, 385
AspS9I	GGNCC	1 cut(s)	132
AsuC2I	CCSGG	1 cut(s)	223
AsuII	TTCGAA	1 cut(s)	314
BanII	GRGCYC	1 cut(s)	200
BbsI	GAAGAC	1 cut(s)	31
Bbv12I	GWGCWC	1 cut(s)	200
BbvI	GCAGC	4 cut(s)	244, 253, 372, 394
BccI	CCATC	2 cut(s)	71, 76
BceAI	ACGGC	2 cut(s)	61, 326
BclI	TGATCA	1 cut(s)	328
BcnI	CCSGG	1 cut(s)	223
BisI	GCNGC	4 cut(s)	258, 267, 383, 386
BlsI	GCNGC	4 cut(s)	259, 268, 384, 387
Bme1390I	CCNGG	1 cut(s)	223
BmgT120I	GGNCC	1 cut(s)	132
BmrFI	CCNGG	1 cut(s)	223
BmsI	GCATC	1 cut(s)	208
BpiI	GAAGAC	1 cut(s)	31
BplI	GAGNNNNNCTC	2 cut(s)	187, 219
Bpu14I	TTCGAA	1 cut(s)	314
BpuEI	CTTGAG	1 cut(s)	41
BpuMI	CCSGG	1 cut(s)	223
BsaHI	GRCGYC	1 cut(s)	155
BsaJI	CCNNGG	1 cut(s)	261
Bsc4I	CCNNNNNNNGG	2 cut(s)	30, 229
BseDI	CCNNGG	1 cut(s)	261
BseGI	GGATG	1 cut(s)	63
BseLI	CCNNNNNNNGG	2 cut(s)	30, 229
BseMII	CTCAG	2 cut(s)	224, 392
BseRI	GAGGAG	1 cut(s)	46
BseXI	GCAGC	4 cut(s)	244, 253, 372, 394
BseYI	CCCAGC	1 cut(s)	269
BsgI	GTGCAG	1 cut(s)	371
BshFI	GGCC	2 cut(s)	92, 134
BsiHKAI	GWGCWC	1 cut(s)	200
BsiSI	CCGG	1 cut(s)	223
BslFI	GGGAC	1 cut(s)	142
BslI	CCNNNNNNNGG	2 cut(s)	30, 229
BsmFI	GGGAC	1 cut(s)	142
BsnI	GGCC	2 cut(s)	92, 134
Bsp119I	TTCGAA	1 cut(s)	314
Bsp1286I	GDGCHC	1 cut(s)	200
Bsp143I	GATC	3 cut(s)	96, 232, 328
BspACI	CCGC	1 cut(s)	230
BspANI	GGCC	2 cut(s)	92, 134
BspCNI	CTCAG	2 cut(s)	223, 391
BspPI	GGATC	1 cut(s)	240
BspQI	GCTCTTC	1 cut(s)	294
BspT104I	TTCGAA	1 cut(s)	314
BssECI	CCNNGG	1 cut(s)	261
BssMI	GATC	3 cut(s)	96, 232, 328
BssNI	GRCGYC	1 cut(s)	155
BssT1I	CCWWGG	1 cut(s)	261
Bst6I	CTCTTC	2 cut(s)	178, 294
BstACI	GRCGYC	1 cut(s)	155
BstAPI	GCANNNNNTGC	1 cut(s)	254
BstBI	TTCGAA	1 cut(s)	314
BstC8I	GCNNGC	1 cut(s)	250
BstDEI	CTNAG	2 cut(s)	210, 378
BstF5I	GGATG	1 cut(s)	63
BstKTI	GATC	3 cut(s)	99, 235, 331
BstMBI	GATC	3 cut(s)	96, 232, 328
BstMWI	GCNNNNNNNGC	8 cut(s)	89, 227, 236, 245, 254, 263, 266, 358
BstSCI	CCNGG	1 cut(s)	221
BstV1I	GCAGC	4 cut(s)	244, 253, 372, 394
BstV2I	GAAGAC	1 cut(s)	31
BsuRI	GGCC	2 cut(s)	92, 134
BtsCI	GGATG	1 cut(s)	63
BtsI	GCAGTG	1 cut(s)	102
BtsIMutI	CAGTG	1 cut(s)	102
Cac8I	GCNNGC	1 cut(s)	250
CaiI	CAGNNNCTG	1 cut(s)	385
Cfr13I	GGNCC	1 cut(s)	132
CseI	GACGC	1 cut(s)	25
DdeI	CTNAG	2 cut(s)	210, 378
DpnI	GATC	3 cut(s)	98, 234, 330
DpnII	GATC	3 cut(s)	96, 232, 328
EaeI	YGGCCR	1 cut(s)	90
Eam1104I	CTCTTC	2 cut(s)	178, 294
EarI	CTCTTC	2 cut(s)	178, 294
Ecl136II	GAGCTC	1 cut(s)	198
Eco130I	CCWWGG	1 cut(s)	261
Eco24I	GRGCYC	1 cut(s)	200
Eco53kI	GAGCTC	1 cut(s)	198
EcoICRI	GAGCTC	1 cut(s)	198
EcoT14I	CCWWGG	1 cut(s)	261
EcoT38I	GRGCYC	1 cut(s)	200
ErhI	CCWWGG	1 cut(s)	261
FaqI	GGGAC	1 cut(s)	142
FbaI	TGATCA	1 cut(s)	328
Fnu4HI	GCNGC	4 cut(s)	258, 267, 383, 386
FokI	GGATG	1 cut(s)	50
FriOI	GRGCYC	1 cut(s)	200
Fsp4HI	GCNGC	4 cut(s)	258, 267, 383, 386
GluI	GCNGC	4 cut(s)	258, 267, 383, 386
GsaI	CCCAGC	1 cut(s)	273
HaeIII	GGCC	2 cut(s)	92, 134
HapII	CCGG	1 cut(s)	223
HgaI	GACGC	1 cut(s)	25
Hin1I	GRCGYC	1 cut(s)	155
HindIII	AAGCTT	1 cut(s)	350
HinfI	GANTC	1 cut(s)	149
HpaII	CCGG	1 cut(s)	223
Hpy188I	TCNGA	1 cut(s)	333
Hpy188III	TCNNGA	4 cut(s)	58, 119, 146, 184
Hpy99I	CGWCG	2 cut(s)	47, 157
HpyAV	CCTTC	1 cut(s)	171
HpyCH4IV	ACGT	1 cut(s)	155
HpyCH4V	TGCA	2 cut(s)	107, 388
HpyF10VI	GCNNNNNNNGC	8 cut(s)	89, 227, 236, 245, 254, 263, 266, 358
HpyF3I	CTNAG	2 cut(s)	210, 378
HpySE526I	ACGT	1 cut(s)	155
Hsp92I	GRCGYC	1 cut(s)	155
Ksp22I	TGATCA	1 cut(s)	328
Kzo9I	GATC	3 cut(s)	96, 232, 328
LguI	GCTCTTC	1 cut(s)	294
LmnI	GCTCC	2 cut(s)	26, 33
LpnPI	CCDG	7 cut(s)	26, 90, 221, 234, 236, 255, 339
Lsp1109I	GCAGC	4 cut(s)	244, 253, 372, 394
LweI	GCATC	1 cut(s)	208
MaeII	ACGT	1 cut(s)	155
MalI	GATC	3 cut(s)	98, 234, 330
MboI	GATC	3 cut(s)	96, 232, 328
MboII	GAAGA	8 cut(s)	31, 134, 156, 159, 165, 168, 199, 281
MhlI	GDGCHC	1 cut(s)	200
MluCI	AATT	1 cut(s)	108
MnlI	CCTC	6 cut(s)	24, 145, 181, 219, 277, 346
MspA1I	CMGCKG	1 cut(s)	385
MspI	CCGG	1 cut(s)	223
MspR9I	CCNGG	1 cut(s)	223
MwoI	GCNNNNNNNGC	8 cut(s)	89, 227, 236, 245, 254, 263, 266, 358
NciI	CCSGG	1 cut(s)	223
NdeII	GATC	3 cut(s)	96, 232, 328
NmeAIII	GCCGAG	1 cut(s)	118
NspV	TTCGAA	1 cut(s)	314
PciSI	GCTCTTC	1 cut(s)	294
PfeI	GAWTC	1 cut(s)	149
PkrI	GCNGC	4 cut(s)	259, 268, 384, 387
Psp124BI	GAGCTC	1 cut(s)	200
PspFI	CCCAGC	1 cut(s)	269
PspPI	GGNCC	1 cut(s)	132
PstNI	CAGNNNCTG	1 cut(s)	385
PvuII	CAGCTG	1 cut(s)	385
SacI	GAGCTC	1 cut(s)	200
SapI	GCTCTTC	1 cut(s)	294
SatI	GCNGC	4 cut(s)	258, 267, 383, 386
Sau3AI	GATC	3 cut(s)	96, 232, 328
Sau96I	GGNCC	1 cut(s)	132
ScrFI	CCNGG	1 cut(s)	223
SduI	GDGCHC	1 cut(s)	200
SfaNI	GCATC	1 cut(s)	208
SfuI	TTCGAA	1 cut(s)	314
SmlI	CTYRAG	1 cut(s)	56
SmoI	CTYRAG	1 cut(s)	56
Sse9I	AATT	1 cut(s)	108
SsiI	CCGC	1 cut(s)	230
SstI	GAGCTC	1 cut(s)	200
StyD4I	CCNGG	1 cut(s)	221
StyI	CCWWGG	1 cut(s)	261
TaiI	ACGT	1 cut(s)	158
TaqI	TCGA	6 cut(s)	42, 147, 152, 185, 279, 314
TasI	AATT	1 cut(s)	108
TfiI	GAWTC	1 cut(s)	149
TscAI	CASTG	1 cut(s)	109
TseI	GCWGC	4 cut(s)	257, 266, 382, 385
TspDTI	ATGAA	1 cut(s)	344
TspRI	CASTG	1 cut(s)	109
ZraI	GACGTC	1 cut(s)	156

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.