Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0008988

Physical Location & Seq

Genomic Coordinates Reverse (-)

56678824 .. 56679279

Gene Structure 456 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG370900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 456 bp

ATGTTAGACTTCTTTTGGCGACATGAAGAAGGTAGAGTGATCGAGGAGCAATTCCGCGAACTCACGTATGTAGCTGGTGAGGACCGTGAGGTTAAGAGAAGACTGTCAATGGATCTGGTGGGGACCTTGGAGAAGCCCTTATCATCAAACGATGTAGAGTTGTCTCTCAAGCAAACCGAACAGCAGTTAGTTACAAGGTTTCCCAGGTTGCTTGATCTTGTTATAGCGGAGGAAGAGAGTACCACTACTGCGATGTTTAAACCCCTCTTTGGAGATCTAAAATCCACACTGCAGTCCTTAAAACCCTTCGCCGAGAAGATAGAGGTATTGGATCTCGCAGAGGAGGAAGTAGAGGATATTATAGCACTAATGGAGAAGGGTTTCGAGCTTGTCCCGAGTTCTCCTGGTGTCGTGCTGCGCCGCAGCTACTACAAAAAGAATGTATACATGAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009909 GO:0009910 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0048519 GO:0048580 GO:0048581 GO:0048831 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051239 GO:0051241 GO:0051716 GO:0060089 GO:0060860 GO:0060862 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564 GO:2000026 GO:2000241 GO:2000242

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

151

Amino Acids

17.55

Weight (kDa)

4.78

Isoelectric Point (pI)

63.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RPW8	PF05659	70 - 150	1.6e-09	Arabidopsis broad-spectrum mildew resistance protein RPW8

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

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Publication-ready

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Orthologous Genes (Group: OG0008988)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g27310
rosa_laevigata	RLG00000011726 RLG00000011727 RLG00000030282
rosa_multiflora	Rmu_sc0003139.1_g000047
rosa_rugosa	Rorug06G0258300 Rorug06G0258400 Rorug06G0258500 Rorug06G0258600
rosa_samantha	Rh1DG298000 Rh6AG370900 Rh6BG378400 Rh6BG378500 Rh6BG378600 Rh6BG378700 Rh6CG384000 Rh6CG384100 Rh6DG370900 Rh6DG371000 Rh6DG371100 Rh6DG371200 Rh6DG371300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	444
AccII	CGCG	1 cut(s)	57
AciI	CCGC	3 cut(s)	55, 227, 421
AclWI	GGATC	2 cut(s)	120, 339
AfaI	GTAC	1 cut(s)	241
AfiI	CCNNNNNNNGG	1 cut(s)	269
AjnI	CCWGG	2 cut(s)	203, 403
AluBI	AGCT	3 cut(s)	74, 388, 426
AluI	AGCT	3 cut(s)	74, 388, 426
Alw26I	GTCTC	1 cut(s)	168
AlwI	GGATC	2 cut(s)	120, 339
Ama87I	CYCGRG	1 cut(s)	394
ApeKI	GCWGC	2 cut(s)	415, 423
Asp700I	GAANNNNTTC	1 cut(s)	380
AspLEI	GCGC	1 cut(s)	420
AspS9I	GGNCC	2 cut(s)	82, 123
AsuHPI	GGTGA	1 cut(s)	89
AvaI	CYCGRG	1 cut(s)	394
AvaII	GGWCC	2 cut(s)	82, 123
BbsI	GAAGAC	1 cut(s)	106
BbvI	GCAGC	2 cut(s)	402, 435
BciT130I	CCWGG	2 cut(s)	205, 405
BcoDI	GTCTC	1 cut(s)	168
BfaI	CTAG	1 cut(s)	454
BfmI	CTRYAG	1 cut(s)	290
BglII	AGATCT	1 cut(s)	274
BisI	GCNGC	3 cut(s)	416, 421, 424
BlsI	GCNGC	3 cut(s)	417, 422, 425
Bme1390I	CCNGG	2 cut(s)	205, 405
Bme18I	GGWCC	2 cut(s)	82, 123
BmeT110I	CYCGRG	1 cut(s)	394
BmgT120I	GGNCC	2 cut(s)	82, 123
BmiI	GGNNCC	1 cut(s)	124
BmrFI	CCNGG	2 cut(s)	205, 405
BpiI	GAAGAC	1 cut(s)	106
BpuEI	CTTGAG	1 cut(s)	152
BsaAI	YACGTR	1 cut(s)	66
BsaJI	CCNNGG	2 cut(s)	126, 203
Bsc4I	CCNNNNNNNGG	1 cut(s)	269
BseBI	CCWGG	2 cut(s)	205, 405
BseDI	CCNNGG	2 cut(s)	126, 203
BseLI	CCNNNNNNNGG	1 cut(s)	269
BseRI	GAGGAG	2 cut(s)	59, 356
BseXI	GCAGC	2 cut(s)	402, 435
Bsh1236I	CGCG	1 cut(s)	57
BsiHKCI	CYCGRG	1 cut(s)	394
BslFI	GGGAC	2 cut(s)	136, 377
BslI	CCNNNNNNNGG	1 cut(s)	269
BsmAI	GTCTC	1 cut(s)	168
BsmFI	GGGAC	2 cut(s)	136, 377
BsoBI	CYCGRG	1 cut(s)	394
Bsp143I	GATC	5 cut(s)	39, 112, 214, 274, 331
BspACI	CCGC	3 cut(s)	55, 227, 421
BspFNI	CGCG	1 cut(s)	57
BspLI	GGNNCC	1 cut(s)	124
BspMAI	CTGCAG	1 cut(s)	294
BspPI	GGATC	2 cut(s)	120, 339
BssECI	CCNNGG	2 cut(s)	126, 203
BssMI	GATC	5 cut(s)	39, 112, 214, 274, 331
BssNAI	GTATAC	1 cut(s)	445
BssT1I	CCWWGG	1 cut(s)	126
Bst1107I	GTATAC	1 cut(s)	445
Bst2UI	CCWGG	2 cut(s)	205, 405
Bst4CI	ACNGT	2 cut(s)	86, 105
Bst6I	CTCTTC	1 cut(s)	228
BstBAI	YACGTR	1 cut(s)	66
BstFNI	CGCG	1 cut(s)	57
BstHHI	GCGC	1 cut(s)	420
BstKTI	GATC	5 cut(s)	42, 115, 217, 277, 334
BstMAI	GTCTC	1 cut(s)	168
BstMBI	GATC	5 cut(s)	39, 112, 214, 274, 331
BstNI	CCWGG	2 cut(s)	205, 405
BstSCI	CCNGG	2 cut(s)	203, 403
BstSFI	CTRYAG	1 cut(s)	290
BstUI	CGCG	1 cut(s)	57
BstV1I	GCAGC	2 cut(s)	402, 435
BstV2I	GAAGAC	1 cut(s)	106
BstX2I	RGATCY	3 cut(s)	112, 274, 331
BstYI	RGATCY	3 cut(s)	112, 274, 331
BstZ17I	GTATAC	1 cut(s)	445
BtgZI	GCGATG	1 cut(s)	266
BtsI	GCAGTG	1 cut(s)	287
BtsIMutI	CAGTG	1 cut(s)	287
CfoI	GCGC	1 cut(s)	420
Cfr13I	GGNCC	2 cut(s)	82, 123
Csp6I	GTAC	1 cut(s)	240
CviAII	CATG	2 cut(s)	23, 448
CviJI	RGCY	4 cut(s)	74, 136, 388, 426
CviKI_1	RGCY	4 cut(s)	74, 136, 388, 426
CviQI	GTAC	1 cut(s)	240
DpnI	GATC	5 cut(s)	41, 114, 216, 276, 333
DpnII	GATC	5 cut(s)	39, 112, 214, 274, 331
DraI	TTTAAA	1 cut(s)	259
Eam1104I	CTCTTC	1 cut(s)	228
EarI	CTCTTC	1 cut(s)	228
Eco130I	CCWWGG	1 cut(s)	126
Eco47I	GGWCC	2 cut(s)	82, 123
Eco88I	CYCGRG	1 cut(s)	394
EcoO109I	RGGNCCY	1 cut(s)	123
EcoRII	CCWGG	2 cut(s)	203, 403
EcoT14I	CCWWGG	1 cut(s)	126
ErhI	CCWWGG	1 cut(s)	126
FaeI	CATG	2 cut(s)	26, 451
FaiI	YATR	6 cut(s)	24, 69, 224, 362, 445, 449
FaqI	GGGAC	2 cut(s)	136, 377
FatI	CATG	2 cut(s)	22, 447
FblI	GTMKAC	1 cut(s)	444
Fnu4HI	GCNGC	3 cut(s)	416, 421, 424
Fsp4HI	GCNGC	3 cut(s)	416, 421, 424
FspBI	CTAG	1 cut(s)	454
GlaI	GCGC	1 cut(s)	419
GluI	GCNGC	3 cut(s)	416, 421, 424
HhaI	GCGC	1 cut(s)	420
Hin1II	CATG	2 cut(s)	26, 451
Hin6I	GCGC	1 cut(s)	418
HinP1I	GCGC	1 cut(s)	418
HphI	GGTGA	1 cut(s)	89
Hpy166II	GTNNAC	1 cut(s)	445
Hpy188III	TCNNGA	1 cut(s)	394
Hpy8I	GTNNAC	1 cut(s)	445
HpyAV	CCTTC	3 cut(s)	23, 316, 370
HpyCH4III	ACNGT	2 cut(s)	86, 105
HpyCH4IV	ACGT	1 cut(s)	65
HpyCH4V	TGCA	1 cut(s)	292
HpySE526I	ACGT	1 cut(s)	65
Hsp92II	CATG	2 cut(s)	26, 451
HspAI	GCGC	1 cut(s)	418
Kzo9I	GATC	5 cut(s)	39, 112, 214, 274, 331
LmnI	GCTCC	1 cut(s)	46
LpnPI	CCDG	6 cut(s)	60, 101, 190, 217, 390, 417
Lsp1109I	GCAGC	2 cut(s)	402, 435
MaeI	CTAG	1 cut(s)	454
MaeII	ACGT	1 cut(s)	65
MaeIII	GTNAC	1 cut(s)	190
MalI	GATC	5 cut(s)	41, 114, 216, 276, 333
MboI	GATC	5 cut(s)	39, 112, 214, 274, 331
MboII	GAAGA	4 cut(s)	38, 111, 245, 328
MflI	RGATCY	3 cut(s)	112, 274, 331
MluCI	AATT	1 cut(s)	50
MnlI	CCTC	9 cut(s)	37, 73, 82, 223, 275, 316, 334, 337, 346
MroXI	GAANNNNTTC	1 cut(s)	380
MseI	TTAA	3 cut(s)	93, 258, 299
MspR9I	CCNGG	2 cut(s)	205, 405
MssI	GTTTAAAC	1 cut(s)	259
MvaI	CCWGG	2 cut(s)	205, 405
MvnI	CGCG	1 cut(s)	57
NdeII	GATC	5 cut(s)	39, 112, 214, 274, 331
NlaIII	CATG	2 cut(s)	26, 451
NlaIV	GGNNCC	1 cut(s)	124
NmeAIII	GCCGAG	1 cut(s)	337
PdmI	GAANNNNTTC	1 cut(s)	380
PkrI	GCNGC	3 cut(s)	417, 422, 425
PmeI	GTTTAAAC	1 cut(s)	259
Ppu21I	YACGTR	1 cut(s)	66
PpuMI	RGGWCCY	1 cut(s)	123
Psp5II	RGGWCCY	1 cut(s)	123
Psp6I	CCWGG	2 cut(s)	203, 403
PspGI	CCWGG	2 cut(s)	203, 403
PspN4I	GGNNCC	1 cut(s)	124
PspPI	GGNCC	2 cut(s)	82, 123
PspPPI	RGGWCCY	1 cut(s)	123
PstI	CTGCAG	1 cut(s)	294
PsuI	RGATCY	3 cut(s)	112, 274, 331
RsaI	GTAC	1 cut(s)	241
RsaNI	GTAC	1 cut(s)	240
SaqAI	TTAA	3 cut(s)	93, 258, 299
SatI	GCNGC	3 cut(s)	416, 421, 424
Sau3AI	GATC	5 cut(s)	39, 112, 214, 274, 331
Sau96I	GGNCC	2 cut(s)	82, 123
ScrFI	CCNGG	2 cut(s)	205, 405
SfcI	CTRYAG	1 cut(s)	290
SinI	GGWCC	2 cut(s)	82, 123
SmlI	CTYRAG	1 cut(s)	167
SmoI	CTYRAG	1 cut(s)	167
Sse9I	AATT	1 cut(s)	50
SsiI	CCGC	3 cut(s)	55, 227, 421
SspMI	CTAG	1 cut(s)	454
StyD4I	CCNGG	2 cut(s)	203, 403
StyI	CCWWGG	1 cut(s)	126
TaaI	ACNGT	2 cut(s)	86, 105
TaiI	ACGT	1 cut(s)	68
TaqI	TCGA	2 cut(s)	42, 384
TasI	AATT	1 cut(s)	50
TauI	GCSGC	1 cut(s)	423
Tru1I	TTAA	3 cut(s)	93, 258, 299
Tru9I	TTAA	3 cut(s)	93, 258, 299
TscAI	CASTG	1 cut(s)	294
TseI	GCWGC	2 cut(s)	415, 423
TspDTI	ATGAA	1 cut(s)	39
TspRI	CASTG	1 cut(s)	294
VpaK11BI	GGWCC	2 cut(s)	82, 123
XmiI	GTMKAC	1 cut(s)	444
XmnI	GAANNNNTTC	1 cut(s)	380
XspI	CTAG	1 cut(s)	454

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.