Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0008988

Physical Location & Seq

Genomic Coordinates Reverse (-)

60743292 .. 60743534

Gene Structure 243 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG378700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 243 bp

ATGGATATGGTGGAGACCTTGGAGAAGCTCTTATTATCATCAAGTAAAGTAGAGTTGCCTCTCAAGCAATCTGAAGAGCAGTTAGTTAAAATGTTTCCCAGGTTGCTTGATCTTGTTATAGAGGAGGAAAAGAGTACCACTACGATGTTTAAACCCCTCTTTGGAGATCTAAAATCCACACTGCAGTCCTTAAAACCCTTCGCCGAGAAGATAGAGGTATTGAATCTCGCAGAGGAGGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009909 GO:0009910 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0048519 GO:0048580 GO:0048581 GO:0048831 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051239 GO:0051241 GO:0051716 GO:0060089 GO:0060860 GO:0060862 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564 GO:2000026 GO:2000241 GO:2000242

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

80

Amino Acids

9.2

Weight (kDa)

4.67

Isoelectric Point (pI)

68.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RPW8	PF05659	34 - 77	2.7e-06	Arabidopsis broad-spectrum mildew resistance protein RPW8

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0008988)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g27310
rosa_laevigata	RLG00000011726 RLG00000011727 RLG00000030282
rosa_multiflora	Rmu_sc0003139.1_g000047
rosa_rugosa	Rorug06G0258300 Rorug06G0258400 Rorug06G0258500 Rorug06G0258600
rosa_samantha	Rh1DG298000 Rh6AG370900 Rh6BG378400 Rh6BG378500 Rh6BG378600 Rh6BG378700 Rh6CG384000 Rh6CG384100 Rh6DG370900 Rh6DG371000 Rh6DG371100 Rh6DG371200 Rh6DG371300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcuI	CTGAAG	1 cut(s)	93
AfaI	GTAC	1 cut(s)	136
AfiI	CCNNNNNNNGG	1 cut(s)	161
AgsI	TTSAA	1 cut(s)	223
AjnI	CCWGG	1 cut(s)	98
AluBI	AGCT	1 cut(s)	28
AluI	AGCT	1 cut(s)	28
Alw26I	GTCTC	1 cut(s)	8
BciT130I	CCWGG	1 cut(s)	100
BcoDI	GTCTC	1 cut(s)	8
BfmI	CTRYAG	1 cut(s)	182
BglII	AGATCT	1 cut(s)	166
Bme1390I	CCNGG	1 cut(s)	100
BmrFI	CCNGG	1 cut(s)	100
BpuEI	CTTGAG	1 cut(s)	47
BsaI	GGTCTC	1 cut(s)	8
BsaJI	CCNNGG	2 cut(s)	18, 98
Bsc4I	CCNNNNNNNGG	1 cut(s)	161
BseBI	CCWGG	1 cut(s)	100
BseDI	CCNNGG	2 cut(s)	18, 98
BseLI	CCNNNNNNNGG	1 cut(s)	161
BseRI	GAGGAG	1 cut(s)	137
BslI	CCNNNNNNNGG	1 cut(s)	161
BsmAI	GTCTC	1 cut(s)	8
Bso31I	GGTCTC	1 cut(s)	8
Bsp143I	GATC	2 cut(s)	109, 166
BspMAI	CTGCAG	1 cut(s)	186
BspQI	GCTCTTC	1 cut(s)	69
BspTNI	GGTCTC	1 cut(s)	8
BssECI	CCNNGG	2 cut(s)	18, 98
BssMI	GATC	2 cut(s)	109, 166
BssT1I	CCWWGG	1 cut(s)	18
Bst2UI	CCWGG	1 cut(s)	100
Bst6I	CTCTTC	1 cut(s)	69
BstKTI	GATC	2 cut(s)	112, 169
BstMAI	GTCTC	1 cut(s)	8
BstMBI	GATC	2 cut(s)	109, 166
BstMWI	GCNNNNNNNGC	1 cut(s)	64
BstNI	CCWGG	1 cut(s)	100
BstSCI	CCNGG	1 cut(s)	98
BstSFI	CTRYAG	1 cut(s)	182
BstX2I	RGATCY	1 cut(s)	166
BstYI	RGATCY	1 cut(s)	166
BtsI	GCAGTG	1 cut(s)	179
BtsIMutI	CAGTG	1 cut(s)	179
Csp6I	GTAC	1 cut(s)	135
CviJI	RGCY	1 cut(s)	28
CviKI_1	RGCY	1 cut(s)	28
CviQI	GTAC	1 cut(s)	135
DpnI	GATC	2 cut(s)	111, 168
DpnII	GATC	2 cut(s)	109, 166
DraI	TTTAAA	1 cut(s)	151
Eam1104I	CTCTTC	1 cut(s)	69
EarI	CTCTTC	1 cut(s)	69
Eco130I	CCWWGG	1 cut(s)	18
Eco31I	GGTCTC	1 cut(s)	8
Eco57I	CTGAAG	1 cut(s)	93
EcoRII	CCWGG	1 cut(s)	98
EcoT14I	CCWWGG	1 cut(s)	18
ErhI	CCWWGG	1 cut(s)	18
FaiI	YATR	2 cut(s)	8, 119
HinfI	GANTC	1 cut(s)	223
Hpy188I	TCNGA	1 cut(s)	73
HpyAV	CCTTC	1 cut(s)	208
HpyCH4V	TGCA	1 cut(s)	184
HpyF10VI	GCNNNNNNNGC	1 cut(s)	64
Kzo9I	GATC	2 cut(s)	109, 166
LguI	GCTCTTC	1 cut(s)	69
LpnPI	CCDG	2 cut(s)	85, 112
MalI	GATC	2 cut(s)	111, 168
MboI	GATC	2 cut(s)	109, 166
MboII	GAAGA	2 cut(s)	86, 220
MflI	RGATCY	1 cut(s)	166
MnlI	CCTC	7 cut(s)	69, 115, 118, 167, 208, 226, 229
MseI	TTAA	3 cut(s)	87, 150, 191
MslI	CAYNNNNRTG	1 cut(s)	143
MspR9I	CCNGG	1 cut(s)	100
MssI	GTTTAAAC	1 cut(s)	151
MvaI	CCWGG	1 cut(s)	100
MwoI	GCNNNNNNNGC	1 cut(s)	64
NdeII	GATC	2 cut(s)	109, 166
NmeAIII	GCCGAG	1 cut(s)	229
PciSI	GCTCTTC	1 cut(s)	69
PfeI	GAWTC	1 cut(s)	223
PmeI	GTTTAAAC	1 cut(s)	151
Psp6I	CCWGG	1 cut(s)	98
PspGI	CCWGG	1 cut(s)	98
PstI	CTGCAG	1 cut(s)	186
PsuI	RGATCY	1 cut(s)	166
RsaI	GTAC	1 cut(s)	136
RsaNI	GTAC	1 cut(s)	135
RseI	CAYNNNNRTG	1 cut(s)	143
SapI	GCTCTTC	1 cut(s)	69
SaqAI	TTAA	3 cut(s)	87, 150, 191
Sau3AI	GATC	2 cut(s)	109, 166
ScrFI	CCNGG	1 cut(s)	100
SetI	ASST	4 cut(s)	20, 30, 104, 219
SfcI	CTRYAG	1 cut(s)	182
SgeI	CNNG	9 cut(s)	31, 54, 76, 111, 112, 119, 125, 217, 239
SmiMI	CAYNNNNRTG	1 cut(s)	143
SmlI	CTYRAG	1 cut(s)	62
SmoI	CTYRAG	1 cut(s)	62
StyD4I	CCNGG	1 cut(s)	98
StyI	CCWWGG	1 cut(s)	18
TfiI	GAWTC	1 cut(s)	223
Tru1I	TTAA	3 cut(s)	87, 150, 191
Tru9I	TTAA	3 cut(s)	87, 150, 191
TscAI	CASTG	1 cut(s)	186
TspRI	CASTG	1 cut(s)	186

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.