Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0008988

Physical Location & Seq

Genomic Coordinates Reverse (-)

60728208 .. 60728678

Gene Structure 471 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG378400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 471 bp

ATGTATCTCAGAAGAATGTTAGACTTCTTGTGGCGACATGAAGAAGGTAGAGTGATCGAGGAGCAATTCCGCGAACTCACGTATGTAGCTGGTGAGGACCGTGAGGTTAAGAGAAGACTGTCAATGGATCTGGTGGGGACCTTGGAGAAGCCCTTATCATCAAACGATGTAGAGTTGTCTCTCAAGCAAACCGAACAGCAGTTAGTTACAAGGTTTCCCAGGTTGCTTGATCTTGTTATAGCGGAGGAAGAGAGTACCACTACTGCGATGTTTAAACCCCTCTTTGGAGATCTAAAATCCACACTGCAGTCCTTAAAACCCTTCGCCGAGAAGATAGAGGTATTGGATCTCGCAGAGGAGGATGTAGAGGATATTATAGCACTAATGGAGAAGGGTTTCGAGCTTGTCCCGAGTTCTCCTGGTGTCGTGCTGCGCCGCAGCTACTACAAAAAGAATGTATACATGAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009909 GO:0009910 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0048519 GO:0048580 GO:0048581 GO:0048831 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051239 GO:0051241 GO:0051716 GO:0060089 GO:0060860 GO:0060862 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564 GO:2000026 GO:2000241 GO:2000242

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

156

Amino Acids

18.22

Weight (kDa)

4.93

Isoelectric Point (pI)

68.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RPW8	PF05659	75 - 155	4e-09	Arabidopsis broad-spectrum mildew resistance protein RPW8

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

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Publication-ready

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Orthologous Genes (Group: OG0008988)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g27310
rosa_laevigata	RLG00000011726 RLG00000011727 RLG00000030282
rosa_multiflora	Rmu_sc0003139.1_g000047
rosa_rugosa	Rorug06G0258300 Rorug06G0258400 Rorug06G0258500 Rorug06G0258600
rosa_samantha	Rh1DG298000 Rh6AG370900 Rh6BG378400 Rh6BG378500 Rh6BG378600 Rh6BG378700 Rh6CG384000 Rh6CG384100 Rh6DG370900 Rh6DG371000 Rh6DG371100 Rh6DG371200 Rh6DG371300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	459
AccII	CGCG	1 cut(s)	72
AciI	CCGC	3 cut(s)	70, 242, 436
AclWI	GGATC	2 cut(s)	135, 354
AfaI	GTAC	1 cut(s)	256
AfiI	CCNNNNNNNGG	1 cut(s)	284
AjnI	CCWGG	2 cut(s)	218, 418
AluBI	AGCT	3 cut(s)	89, 403, 441
AluI	AGCT	3 cut(s)	89, 403, 441
Alw26I	GTCTC	1 cut(s)	183
AlwI	GGATC	2 cut(s)	135, 354
Ama87I	CYCGRG	1 cut(s)	409
ApeKI	GCWGC	2 cut(s)	430, 438
Asp700I	GAANNNNTTC	1 cut(s)	395
AspLEI	GCGC	1 cut(s)	435
AspS9I	GGNCC	2 cut(s)	97, 138
AsuHPI	GGTGA	1 cut(s)	104
AvaI	CYCGRG	1 cut(s)	409
AvaII	GGWCC	2 cut(s)	97, 138
BbsI	GAAGAC	1 cut(s)	121
BbvI	GCAGC	2 cut(s)	417, 450
BciT130I	CCWGG	2 cut(s)	220, 420
BcoDI	GTCTC	1 cut(s)	183
BfaI	CTAG	1 cut(s)	469
BfmI	CTRYAG	1 cut(s)	305
BglII	AGATCT	1 cut(s)	289
BisI	GCNGC	3 cut(s)	431, 436, 439
BlsI	GCNGC	3 cut(s)	432, 437, 440
Bme1390I	CCNGG	2 cut(s)	220, 420
Bme18I	GGWCC	2 cut(s)	97, 138
BmeT110I	CYCGRG	1 cut(s)	409
BmgT120I	GGNCC	2 cut(s)	97, 138
BmiI	GGNNCC	1 cut(s)	139
BmrFI	CCNGG	2 cut(s)	220, 420
BpiI	GAAGAC	1 cut(s)	121
BpuEI	CTTGAG	1 cut(s)	167
BsaAI	YACGTR	1 cut(s)	81
BsaJI	CCNNGG	2 cut(s)	141, 218
Bsc4I	CCNNNNNNNGG	1 cut(s)	284
BseBI	CCWGG	2 cut(s)	220, 420
BseDI	CCNNGG	2 cut(s)	141, 218
BseGI	GGATG	1 cut(s)	367
BseLI	CCNNNNNNNGG	1 cut(s)	284
BseMII	CTCAG	1 cut(s)	22
BseRI	GAGGAG	2 cut(s)	74, 371
BseXI	GCAGC	2 cut(s)	417, 450
Bsh1236I	CGCG	1 cut(s)	72
BsiHKCI	CYCGRG	1 cut(s)	409
BslFI	GGGAC	2 cut(s)	151, 392
BslI	CCNNNNNNNGG	1 cut(s)	284
BsmAI	GTCTC	1 cut(s)	183
BsmFI	GGGAC	2 cut(s)	151, 392
BsoBI	CYCGRG	1 cut(s)	409
Bsp143I	GATC	5 cut(s)	54, 127, 229, 289, 346
BspACI	CCGC	3 cut(s)	70, 242, 436
BspCNI	CTCAG	1 cut(s)	21
BspFNI	CGCG	1 cut(s)	72
BspLI	GGNNCC	1 cut(s)	139
BspMAI	CTGCAG	1 cut(s)	309
BspPI	GGATC	2 cut(s)	135, 354
BssECI	CCNNGG	2 cut(s)	141, 218
BssMI	GATC	5 cut(s)	54, 127, 229, 289, 346
BssNAI	GTATAC	1 cut(s)	460
BssT1I	CCWWGG	1 cut(s)	141
Bst1107I	GTATAC	1 cut(s)	460
Bst2UI	CCWGG	2 cut(s)	220, 420
Bst4CI	ACNGT	2 cut(s)	101, 120
Bst6I	CTCTTC	1 cut(s)	243
BstBAI	YACGTR	1 cut(s)	81
BstDEI	CTNAG	1 cut(s)	8
BstF5I	GGATG	1 cut(s)	367
BstFNI	CGCG	1 cut(s)	72
BstHHI	GCGC	1 cut(s)	435
BstKTI	GATC	5 cut(s)	57, 130, 232, 292, 349
BstMAI	GTCTC	1 cut(s)	183
BstMBI	GATC	5 cut(s)	54, 127, 229, 289, 346
BstNI	CCWGG	2 cut(s)	220, 420
BstSCI	CCNGG	2 cut(s)	218, 418
BstSFI	CTRYAG	1 cut(s)	305
BstUI	CGCG	1 cut(s)	72
BstV1I	GCAGC	2 cut(s)	417, 450
BstV2I	GAAGAC	1 cut(s)	121
BstX2I	RGATCY	3 cut(s)	127, 289, 346
BstYI	RGATCY	3 cut(s)	127, 289, 346
BstZ17I	GTATAC	1 cut(s)	460
BtgZI	GCGATG	1 cut(s)	281
BtsCI	GGATG	1 cut(s)	367
BtsI	GCAGTG	1 cut(s)	302
BtsIMutI	CAGTG	1 cut(s)	302
CfoI	GCGC	1 cut(s)	435
Cfr13I	GGNCC	2 cut(s)	97, 138
Csp6I	GTAC	1 cut(s)	255
CviAII	CATG	2 cut(s)	38, 463
CviJI	RGCY	4 cut(s)	89, 151, 403, 441
CviKI_1	RGCY	4 cut(s)	89, 151, 403, 441
CviQI	GTAC	1 cut(s)	255
DdeI	CTNAG	1 cut(s)	8
DpnI	GATC	5 cut(s)	56, 129, 231, 291, 348
DpnII	GATC	5 cut(s)	54, 127, 229, 289, 346
DraI	TTTAAA	1 cut(s)	274
Eam1104I	CTCTTC	1 cut(s)	243
EarI	CTCTTC	1 cut(s)	243
Eco130I	CCWWGG	1 cut(s)	141
Eco47I	GGWCC	2 cut(s)	97, 138
Eco88I	CYCGRG	1 cut(s)	409
EcoO109I	RGGNCCY	1 cut(s)	138
EcoRII	CCWGG	2 cut(s)	218, 418
EcoT14I	CCWWGG	1 cut(s)	141
ErhI	CCWWGG	1 cut(s)	141
FaeI	CATG	2 cut(s)	41, 466
FaiI	YATR	6 cut(s)	39, 84, 239, 377, 460, 464
FaqI	GGGAC	2 cut(s)	151, 392
FatI	CATG	2 cut(s)	37, 462
FblI	GTMKAC	1 cut(s)	459
Fnu4HI	GCNGC	3 cut(s)	431, 436, 439
FokI	GGATG	1 cut(s)	374
Fsp4HI	GCNGC	3 cut(s)	431, 436, 439
FspBI	CTAG	1 cut(s)	469
GlaI	GCGC	1 cut(s)	434
GluI	GCNGC	3 cut(s)	431, 436, 439
HhaI	GCGC	1 cut(s)	435
Hin1II	CATG	2 cut(s)	41, 466
Hin6I	GCGC	1 cut(s)	433
HinP1I	GCGC	1 cut(s)	433
HphI	GGTGA	1 cut(s)	104
Hpy166II	GTNNAC	1 cut(s)	460
Hpy188I	TCNGA	1 cut(s)	11
Hpy188III	TCNNGA	1 cut(s)	409
Hpy8I	GTNNAC	1 cut(s)	460
HpyAV	CCTTC	3 cut(s)	38, 331, 385
HpyCH4III	ACNGT	2 cut(s)	101, 120
HpyCH4IV	ACGT	1 cut(s)	80
HpyCH4V	TGCA	1 cut(s)	307
HpyF3I	CTNAG	1 cut(s)	8
HpySE526I	ACGT	1 cut(s)	80
Hsp92II	CATG	2 cut(s)	41, 466
HspAI	GCGC	1 cut(s)	433
Kzo9I	GATC	5 cut(s)	54, 127, 229, 289, 346
LmnI	GCTCC	1 cut(s)	61
LpnPI	CCDG	6 cut(s)	75, 116, 205, 232, 405, 432
Lsp1109I	GCAGC	2 cut(s)	417, 450
MaeI	CTAG	1 cut(s)	469
MaeII	ACGT	1 cut(s)	80
MaeIII	GTNAC	1 cut(s)	205
MalI	GATC	5 cut(s)	56, 129, 231, 291, 348
MboI	GATC	5 cut(s)	54, 127, 229, 289, 346
MboII	GAAGA	5 cut(s)	24, 53, 126, 260, 343
MflI	RGATCY	3 cut(s)	127, 289, 346
MluCI	AATT	1 cut(s)	65
MnlI	CCTC	9 cut(s)	52, 88, 97, 238, 290, 331, 349, 352, 361
MroXI	GAANNNNTTC	1 cut(s)	395
MseI	TTAA	3 cut(s)	108, 273, 314
MspR9I	CCNGG	2 cut(s)	220, 420
MssI	GTTTAAAC	1 cut(s)	274
MvaI	CCWGG	2 cut(s)	220, 420
MvnI	CGCG	1 cut(s)	72
NdeII	GATC	5 cut(s)	54, 127, 229, 289, 346
NlaIII	CATG	2 cut(s)	41, 466
NlaIV	GGNNCC	1 cut(s)	139
NmeAIII	GCCGAG	1 cut(s)	352
PdmI	GAANNNNTTC	1 cut(s)	395
PkrI	GCNGC	3 cut(s)	432, 437, 440
PmeI	GTTTAAAC	1 cut(s)	274
Ppu21I	YACGTR	1 cut(s)	81
PpuMI	RGGWCCY	1 cut(s)	138
Psp5II	RGGWCCY	1 cut(s)	138
Psp6I	CCWGG	2 cut(s)	218, 418
PspGI	CCWGG	2 cut(s)	218, 418
PspN4I	GGNNCC	1 cut(s)	139
PspPI	GGNCC	2 cut(s)	97, 138
PspPPI	RGGWCCY	1 cut(s)	138
PstI	CTGCAG	1 cut(s)	309
PsuI	RGATCY	3 cut(s)	127, 289, 346
RsaI	GTAC	1 cut(s)	256
RsaNI	GTAC	1 cut(s)	255
SaqAI	TTAA	3 cut(s)	108, 273, 314
SatI	GCNGC	3 cut(s)	431, 436, 439
Sau3AI	GATC	5 cut(s)	54, 127, 229, 289, 346
Sau96I	GGNCC	2 cut(s)	97, 138
ScrFI	CCNGG	2 cut(s)	220, 420
SfcI	CTRYAG	1 cut(s)	305
SinI	GGWCC	2 cut(s)	97, 138
SmlI	CTYRAG	1 cut(s)	182
SmoI	CTYRAG	1 cut(s)	182
Sse9I	AATT	1 cut(s)	65
SsiI	CCGC	3 cut(s)	70, 242, 436
SspMI	CTAG	1 cut(s)	469
StyD4I	CCNGG	2 cut(s)	218, 418
StyI	CCWWGG	1 cut(s)	141
TaaI	ACNGT	2 cut(s)	101, 120
TaiI	ACGT	1 cut(s)	83
TaqI	TCGA	2 cut(s)	57, 399
TasI	AATT	1 cut(s)	65
TauI	GCSGC	1 cut(s)	438
Tru1I	TTAA	3 cut(s)	108, 273, 314
Tru9I	TTAA	3 cut(s)	108, 273, 314
TscAI	CASTG	1 cut(s)	309
TseI	GCWGC	2 cut(s)	430, 438
TspDTI	ATGAA	1 cut(s)	54
TspRI	CASTG	1 cut(s)	309
VpaK11BI	GGWCC	2 cut(s)	97, 138
XmiI	GTMKAC	1 cut(s)	459
XmnI	GAANNNNTTC	1 cut(s)	395
XspI	CTAG	1 cut(s)	469

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.