Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0002861

Physical Location & Seq

Genomic Coordinates Reverse (-)

25468506 .. 25469564

Gene Structure 1059 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g34212.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1050 bp

ATGTTACTGCAAATCAACAATGCAGTGTCAAATGCTGAGGAATACCAGACATATATCATCCAGATGGACCATTCCCACAAACCTGCATCTTTCTTAACGCATGAGGCATGGCATCGGTCCACCCTAGCATCATTAATGCAATCATCTCCTGAAGAACATGATGAGAACGACATGTTCTTGTACTCATACAACCATGTCATGCACAGCTTCAGTGCAAGGCTCACAGCAACTCAGCTGTCGGAACTGAAGAAATCTCCAGCTCATATTGCCACACACCCAGAGCTATTTTTTGAGCTGCTCACAACACACAGCCCCAAGTTTCTTGGACTGAAACAGAACTCTGGCATATGGCCAGCTGCGTCTTTTGGCAAAGATGTGATTATAGGTATTATCGACACTGGTATTTGGCCAGAGAGTGAGAGCTTCAATGATAAAGGAATGGCAGAAGTTCCAGAGAGATGGAAAGGTAAGTGTGAAAATGGGACGGCATTTAGCCAGTCTCTCTGCAACAGGAAGCTCATAGGGGCTCGATCTTTTAGCAAAGGGCTTCAAGCTGAAGGCCTAAAAATCCCACCATCTGACTATAACTCATCAAGAGACCACACTGGTCATGGAACCCACACATCATCAACTGCTGCAGGTAACCACGTAGTTGGTGCAAGTCATTTTGGCTATGCAAAAGGCACGGCAAGAGGTGTGGCGCCGCGTGCACATGTTGCCATGTACAAGGTGCTCTGGGGAGTAGACTCAGAAAAGAGTGTGGCTACTGATGTGCTAGCTGCAATGGACCAGGCAATTTCAGATGGAGTTGATATCATATCAATATCTCTTCGCATTAGTCTGCGAGAGGATCCTCCTTATTTCAATAACGTCATTTCCATCGCTTCTCTTTCAGCAGCCGAGAAAGGAATTGTTGTTGTCTGTGCCGCTGGGAATGAAGGTACTCCAAACTCAATATACAATGGAGCACCCTGGATCACAACAGTTGGAGCTGGCACACTAGATCGTAGTTTCACTGCAACAATGACTAGAAAACGAGTTGACAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Inhibitor_I9 PA Peptidase_S8

Protein Analysis

350

Amino Acids

37.92

Weight (kDa)

6.34

Isoelectric Point (pI)

34.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Inhibitor_I9	PF05922	17 - 93	1.4e-14	Peptidase inhibitor I9
Peptidase_S8	PF00082	123 - 335	3.7e-22	Subtilase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002861)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g34120 FvH4_2g34130 FvH4_2g34150 FvH4_2g34210 FvH4_2g34211 FvH4_2g34212
malus_domestica	MD05G1275700.v1.1 MD05G1275800.v1.1 MD08G1098000.v1.1 MD15G1080200.v1.1 MD15G1080300.v1.1
prunus_persica	Prupe.1G433100_v2.0.a1 Prupe.1G433200_v2.0.a1
pyrus_communis	pycom15g07460
rosa_chinensis	RchiOBHm_Chr6g0308201 RchiOBHm_Chr6g0308211 RchiOBHm_Chr6g0308221
rosa_laevigata	RLG00000010657 RLG00000010658 RLG00000010659
rosa_multiflora	Rmu_sc0005706.1_g000017 Rmu_sc0005706.1_g000018 Rmu_ssc0000355.1_g000001 Rmu_ssc0000355.1_g000006
rosa_roxburghii	Rroxscaffold_7G00160340 Rroxscaffold_7G00160360 Rroxscaffold_7G00160440 Rroxscaffold_7G00160450
rosa_rugosa	Rorug01G0005200 Rorug01G0066300 Rorug06G0364700 Rorug06G0364800 Rorug06G0364900
rosa_samantha	Rh6DG475900 Rh6DG476100 Rh6DG476300
rosa_wichuraiana	Rw6G041330 Rw6G041340 Rw6G041350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	91, 629
AccB1I	GGYRCC	1 cut(s)	700
AccI	GTMKAC	1 cut(s)	744
AccII	CGCG	1 cut(s)	706
AciI	CCGC	2 cut(s)	704, 927
AclWI	GGATC	3 cut(s)	845, 858, 983
AcoI	YGGCCR	2 cut(s)	350, 407
AcuI	CTGAAG	4 cut(s)	171, 193, 266, 576
AcyI	GRCGYC	1 cut(s)	701
AfaI	GTAC	3 cut(s)	182, 725, 943
AflIII	ACRYGT	2 cut(s)	171, 712
AgsI	TTSAA	3 cut(s)	427, 551, 865
AjnI	CCWGG	2 cut(s)	789, 971
Alw21I	GWGCWC	3 cut(s)	712, 735, 970
Alw26I	GTCTC	2 cut(s)	504, 591
Alw44I	GTGCAC	1 cut(s)	708
AlwI	GGATC	3 cut(s)	845, 858, 983
AoxI	GGCC	3 cut(s)	350, 407, 559
ApaLI	GTGCAC	1 cut(s)	708
ApeKI	GCWGC	5 cut(s)	295, 356, 635, 779, 896
AseI	ATTAAT	1 cut(s)	134
AspLEI	GCGC	1 cut(s)	703
AspS9I	GGNCC	3 cut(s)	67, 117, 787
AsuNHI	GCTAGC	1 cut(s)	775
AvaII	GGWCC	3 cut(s)	67, 117, 787
BaeGI	GKGCMC	1 cut(s)	712
BalI	TGGCCA	2 cut(s)	352, 409
BamHI	GGATCC	1 cut(s)	850
BanI	GGYRCC	1 cut(s)	700
BanII	GRGCYC	1 cut(s)	529
Bbv12I	GWGCWC	3 cut(s)	712, 735, 970
BbvCI	CCTCAGC	1 cut(s)	36
BbvI	GCAGC	5 cut(s)	282, 343, 622, 766, 908
BccI	CCATC	5 cut(s)	58, 453, 583, 797, 887
BceAI	ACGGC	2 cut(s)	501, 702
BciT130I	CCWGG	2 cut(s)	791, 973
BcoDI	GTCTC	2 cut(s)	504, 591
BfaI	CTAG	4 cut(s)	125, 776, 1001, 1029
BfmI	CTRYAG	1 cut(s)	636
BfoI	RGCGCY	1 cut(s)	704
BfuAI	ACCTGC	2 cut(s)	91, 629
BisI	GCNGC	7 cut(s)	296, 357, 636, 704, 780, 897, 927
BlsI	GCNGC	7 cut(s)	297, 358, 637, 705, 781, 898, 928
Bme1390I	CCNGG	2 cut(s)	791, 973
Bme18I	GGWCC	3 cut(s)	67, 117, 787
BmgT120I	GGNCC	3 cut(s)	67, 117, 787
BmiI	GGNNCC	3 cut(s)	616, 702, 852
BmrFI	CCNGG	2 cut(s)	791, 973
BmsI	GCATC	3 cut(s)	95, 121, 137
BmtI	GCTAGC	1 cut(s)	779
BpmI	CTGGAG	1 cut(s)	240
Bpu10I	CCTNAGC	1 cut(s)	36
BsaAI	YACGTR	1 cut(s)	649
BsaHI	GRCGYC	1 cut(s)	701
BsaI	GGTCTC	1 cut(s)	591
BsaJI	CCNNGG	1 cut(s)	971
Bse1I	ACTGG	3 cut(s)	403, 496, 610
Bse3DI	GCAATG	1 cut(s)	789
BseBI	CCWGG	2 cut(s)	791, 973
BseDI	CCNNGG	1 cut(s)	971
BseGI	GGATG	1 cut(s)	57
BseMI	GCAATG	1 cut(s)	789
BseMII	CTCAG	3 cut(s)	27, 245, 762
BseNI	ACTGG	3 cut(s)	403, 496, 610
BseSI	GKGCMC	1 cut(s)	712
BseXI	GCAGC	5 cut(s)	282, 343, 622, 766, 908
BseYI	CCCAGC	1 cut(s)	929
Bsh1236I	CGCG	1 cut(s)	706
BshFI	GGCC	3 cut(s)	352, 409, 561
BshNI	GGYRCC	1 cut(s)	700
BsiHKAI	GWGCWC	3 cut(s)	712, 735, 970
BslFI	GGGAC	1 cut(s)	496
BsmAI	GTCTC	2 cut(s)	504, 591
BsmFI	GGGAC	1 cut(s)	496
BsnI	GGCC	3 cut(s)	352, 409, 561
Bso31I	GGTCTC	1 cut(s)	591
Bsp1286I	GDGCHC	4 cut(s)	529, 712, 735, 970
Bsp1407I	TGTACA	1 cut(s)	723
Bsp143I	GATC	4 cut(s)	530, 850, 975, 1003
BspACI	CCGC	2 cut(s)	704, 927
BspANI	GGCC	3 cut(s)	352, 409, 561
BspCNI	CTCAG	3 cut(s)	28, 244, 761
BspFNI	CGCG	1 cut(s)	706
BspLI	GGNNCC	3 cut(s)	616, 702, 852
BspMAI	CTGCAG	1 cut(s)	640
BspMI	ACCTGC	2 cut(s)	91, 629
BspOI	GCTAGC	1 cut(s)	779
BspPI	GGATC	3 cut(s)	845, 858, 983
BspT107I	GGYRCC	1 cut(s)	700
BspTNI	GGTCTC	1 cut(s)	591
BsrDI	GCAATG	1 cut(s)	789
BsrGI	TGTACA	1 cut(s)	723
BsrI	ACTGG	3 cut(s)	403, 496, 610
BssECI	CCNNGG	1 cut(s)	971
BssMI	GATC	4 cut(s)	530, 850, 975, 1003
BssNI	GRCGYC	1 cut(s)	701
Bst2UI	CCWGG	2 cut(s)	791, 973
Bst4CI	ACNGT	2 cut(s)	985, 1046
Bst6I	CTCTTC	1 cut(s)	834
BstACI	GRCGYC	1 cut(s)	701
BstAPI	GCANNNNNTGC	1 cut(s)	716
BstAUI	TGTACA	1 cut(s)	723
BstBAI	YACGTR	1 cut(s)	649
BstC8I	GCNNGC	4 cut(s)	354, 708, 777, 994
BstDEI	CTNAG	3 cut(s)	36, 231, 748
BstEII	GGTNACC	1 cut(s)	641
BstF5I	GGATG	1 cut(s)	57
BstFNI	CGCG	1 cut(s)	706
BstH2I	RGCGCY	1 cut(s)	704
BstHHI	GCGC	1 cut(s)	703
BstKTI	GATC	4 cut(s)	533, 853, 978, 1006
BstMAI	GTCTC	2 cut(s)	504, 591
BstMBI	GATC	4 cut(s)	530, 850, 975, 1003
BstMWI	GCNNNNNNNGC	3 cut(s)	266, 707, 716
BstNI	CCWGG	2 cut(s)	791, 973
BstNSI	RCATGY	2 cut(s)	175, 716
BstPI	GGTNACC	1 cut(s)	641
BstSCI	CCNGG	2 cut(s)	789, 971
BstSFI	CTRYAG	1 cut(s)	636
BstSLI	GKGCMC	1 cut(s)	712
BstUI	CGCG	1 cut(s)	706
BstV1I	GCAGC	5 cut(s)	282, 343, 622, 766, 908
BstX2I	RGATCY	1 cut(s)	850
BstXI	CCANNNNNNTGG	2 cut(s)	459, 653
BstYI	RGATCY	1 cut(s)	850
BsuRI	GGCC	3 cut(s)	352, 409, 561
BtgZI	GCGATG	1 cut(s)	865
BtsCI	GGATG	1 cut(s)	57
BtsI	GCAGTG	2 cut(s)	30, 1014
BtsIMutI	CAGTG	5 cut(s)	30, 217, 396, 603, 1014
BveI	ACCTGC	2 cut(s)	91, 629
Cac8I	GCNNGC	4 cut(s)	354, 708, 777, 994
CfoI	GCGC	1 cut(s)	703
Cfr13I	GGNCC	3 cut(s)	67, 117, 787
CseI	GACGC	1 cut(s)	348
Csp6I	GTAC	3 cut(s)	181, 724, 942
CspCI	CAANNNNNGTGG	2 cut(s)	678, 713
CviAII	CATG	9 cut(s)	101, 108, 158, 172, 194, 199, 611, 713, 721
CviQI	GTAC	3 cut(s)	181, 724, 942
DdeI	CTNAG	3 cut(s)	36, 231, 748
DinI	GGCGCC	1 cut(s)	702
DpnI	GATC	4 cut(s)	532, 852, 977, 1005
DpnII	GATC	4 cut(s)	530, 850, 975, 1003
EaeI	YGGCCR	2 cut(s)	350, 407
Eam1104I	CTCTTC	1 cut(s)	834
EarI	CTCTTC	1 cut(s)	834
Eco147I	AGGCCT	1 cut(s)	561
Eco24I	GRGCYC	1 cut(s)	529
Eco31I	GGTCTC	1 cut(s)	591
Eco32I	GATATC	1 cut(s)	814
Eco47I	GGWCC	3 cut(s)	67, 117, 787
Eco57I	CTGAAG	4 cut(s)	171, 193, 266, 576
Eco91I	GGTNACC	1 cut(s)	641
EcoO65I	GGTNACC	1 cut(s)	641
EcoRII	CCWGG	2 cut(s)	789, 971
EcoRV	GATATC	1 cut(s)	814
EcoT38I	GRGCYC	1 cut(s)	529
EgeI	GGCGCC	1 cut(s)	702
EheI	GGCGCC	1 cut(s)	702
FaeI	CATG	9 cut(s)	104, 111, 161, 175, 197, 202, 614, 716, 724
FaqI	GGGAC	1 cut(s)	496
FatI	CATG	9 cut(s)	100, 107, 157, 171, 193, 198, 610, 712, 720
FauNDI	CATATG	1 cut(s)	347
FblI	GTMKAC	1 cut(s)	744
Fnu4HI	GCNGC	7 cut(s)	296, 357, 636, 704, 780, 897, 927
FokI	GGATG	1 cut(s)	44
FriOI	GRGCYC	1 cut(s)	529
Fsp4HI	GCNGC	7 cut(s)	296, 357, 636, 704, 780, 897, 927
FspBI	CTAG	4 cut(s)	125, 776, 1001, 1029
GlaI	GCGC	1 cut(s)	702
GluI	GCNGC	7 cut(s)	296, 357, 636, 704, 780, 897, 927
GsaI	CCCAGC	1 cut(s)	933
GsuI	CTGGAG	1 cut(s)	240
HaeII	RGCGCY	1 cut(s)	704
HaeIII	GGCC	3 cut(s)	352, 409, 561
HgaI	GACGC	1 cut(s)	348
HhaI	GCGC	1 cut(s)	703
Hin1I	GRCGYC	1 cut(s)	701
Hin1II	CATG	9 cut(s)	104, 111, 161, 175, 197, 202, 614, 716, 724
Hin6I	GCGC	1 cut(s)	701
HinP1I	GCGC	1 cut(s)	701
HincII	GTYRAC	1 cut(s)	1042
HindII	GTYRAC	1 cut(s)	1042
HinfI	GANTC	1 cut(s)	746
Hpy166II	GTNNAC	4 cut(s)	120, 710, 745, 1042
Hpy188I	TCNGA	4 cut(s)	241, 580, 751, 802
Hpy188III	TCNNGA	4 cut(s)	61, 149, 452, 594
Hpy8I	GTNNAC	4 cut(s)	120, 710, 745, 1042
HpyAV	CCTTC	2 cut(s)	551, 932
HpyCH4III	ACNGT	2 cut(s)	985, 1046
HpyCH4IV	ACGT	2 cut(s)	648, 870
HpyF10VI	GCNNNNNNNGC	3 cut(s)	266, 707, 716
HpyF3I	CTNAG	3 cut(s)	36, 231, 748
HpySE526I	ACGT	2 cut(s)	648, 870
Hsp92I	GRCGYC	1 cut(s)	701
Hsp92II	CATG	9 cut(s)	104, 111, 161, 175, 197, 202, 614, 716, 724
HspAI	GCGC	1 cut(s)	701
KasI	GGCGCC	1 cut(s)	700
Kzo9I	GATC	4 cut(s)	530, 850, 975, 1003
LmnI	GCTCC	2 cut(s)	965, 989
Lsp1109I	GCAGC	5 cut(s)	282, 343, 622, 766, 908
LweI	GCATC	3 cut(s)	95, 121, 137
MaeI	CTAG	4 cut(s)	125, 776, 1001, 1029
MaeII	ACGT	2 cut(s)	648, 870
MaeIII	GTNAC	2 cut(s)	3, 641
MalI	GATC	4 cut(s)	532, 852, 977, 1005
MboI	GATC	4 cut(s)	530, 850, 975, 1003
MboII	GAAGA	3 cut(s)	164, 259, 821
MflI	RGATCY	1 cut(s)	850
MhlI	GDGCHC	4 cut(s)	529, 712, 735, 970
MlsI	TGGCCA	2 cut(s)	352, 409
MluCI	AATT	2 cut(s)	795, 909
MluNI	TGGCCA	2 cut(s)	352, 409
Mly113I	GGCGCC	1 cut(s)	701
MlyI	GAGTC	1 cut(s)	740
MmeI	TCCRAC	2 cut(s)	219, 967
MnlI	CCTC	5 cut(s)	31, 97, 686, 841, 864
Mox20I	TGGCCA	2 cut(s)	352, 409
MscI	TGGCCA	2 cut(s)	352, 409
MseI	TTAA	2 cut(s)	95, 134
MslI	CAYNNNNRTG	1 cut(s)	62
Msp20I	TGGCCA	2 cut(s)	352, 409
MspA1I	CMGCKG	3 cut(s)	235, 356, 929
MspR9I	CCNGG	2 cut(s)	791, 973
MvaI	CCWGG	2 cut(s)	791, 973
MvnI	CGCG	1 cut(s)	706
MwoI	GCNNNNNNNGC	3 cut(s)	266, 707, 716
NarI	GGCGCC	1 cut(s)	701
NdeI	CATATG	1 cut(s)	347
NdeII	GATC	4 cut(s)	530, 850, 975, 1003
NheI	GCTAGC	1 cut(s)	775
NlaIII	CATG	9 cut(s)	104, 111, 161, 175, 197, 202, 614, 716, 724
NlaIV	GGNNCC	3 cut(s)	616, 702, 852
NmeAIII	GCCGAG	1 cut(s)	925
NspI	RCATGY	2 cut(s)	175, 716
PceI	AGGCCT	1 cut(s)	561
PciI	ACATGT	2 cut(s)	171, 712
PkrI	GCNGC	7 cut(s)	297, 358, 637, 705, 781, 898, 928
PleI	GAGTC	1 cut(s)	740
PluTI	GGCGCC	1 cut(s)	704
PpsI	GAGTC	1 cut(s)	740
Ppu21I	YACGTR	1 cut(s)	649
PscI	ACATGT	2 cut(s)	171, 712
PshBI	ATTAAT	1 cut(s)	134
Psp6I	CCWGG	2 cut(s)	789, 971
PspEI	GGTNACC	1 cut(s)	641
PspFI	CCCAGC	1 cut(s)	929
PspGI	CCWGG	2 cut(s)	789, 971
PspN4I	GGNNCC	3 cut(s)	616, 702, 852
PspPI	GGNCC	3 cut(s)	67, 117, 787
PstI	CTGCAG	1 cut(s)	640
PsuI	RGATCY	1 cut(s)	850
PvuII	CAGCTG	2 cut(s)	235, 356
RsaI	GTAC	3 cut(s)	182, 725, 943
RsaNI	GTAC	3 cut(s)	181, 724, 942
RseI	CAYNNNNRTG	1 cut(s)	62
SaqAI	TTAA	2 cut(s)	95, 134
SatI	GCNGC	7 cut(s)	296, 357, 636, 704, 780, 897, 927
Sau3AI	GATC	4 cut(s)	530, 850, 975, 1003
Sau96I	GGNCC	3 cut(s)	67, 117, 787
SchI	GAGTC	1 cut(s)	740
ScrFI	CCNGG	2 cut(s)	791, 973
SduI	GDGCHC	4 cut(s)	529, 712, 735, 970
SfaNI	GCATC	3 cut(s)	95, 121, 137
SfcI	CTRYAG	1 cut(s)	636
SfoI	GGCGCC	1 cut(s)	702
SinI	GGWCC	3 cut(s)	67, 117, 787
SmiMI	CAYNNNNRTG	1 cut(s)	62
Sse9I	AATT	2 cut(s)	795, 909
SseBI	AGGCCT	1 cut(s)	561
SsiI	CCGC	2 cut(s)	704, 927
SspDI	GGCGCC	1 cut(s)	700
SspMI	CTAG	4 cut(s)	125, 776, 1001, 1029
StuI	AGGCCT	1 cut(s)	561
StyD4I	CCNGG	2 cut(s)	789, 971
TaaI	ACNGT	2 cut(s)	985, 1046
TaiI	ACGT	2 cut(s)	651, 873
TaqI	TCGA	2 cut(s)	393, 529
TaqII	GACCGA	1 cut(s)	105
TasI	AATT	2 cut(s)	795, 909
TatI	WGTACW	2 cut(s)	180, 723
TauI	GCSGC	2 cut(s)	706, 929
Tru1I	TTAA	2 cut(s)	95, 134
Tru9I	TTAA	2 cut(s)	95, 134
TscAI	CASTG	5 cut(s)	30, 217, 403, 610, 1021
TseI	GCWGC	5 cut(s)	295, 356, 635, 779, 896
TspDTI	ATGAA	1 cut(s)	951
TspRI	CASTG	5 cut(s)	30, 217, 403, 610, 1021
VneI	GTGCAC	1 cut(s)	708
VpaK11BI	GGWCC	3 cut(s)	67, 117, 787
VspI	ATTAAT	1 cut(s)	134
XceI	RCATGY	2 cut(s)	175, 716
XcmI	CCANNNNNNNNNTGG	1 cut(s)	608
XmiI	GTMKAC	1 cut(s)	744
XspI	CTAG	4 cut(s)	125, 776, 1001, 1029

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.