Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0002861

Physical Location & Seq

Genomic Coordinates Forward (+)

66313561 .. 66315927

Gene Structure 2367 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ27712

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2277 bp

ATGAGTTTCTACAGTATGATCTCTCTGTTAGTGTTTACCATACTGCACATCAACAATGCAGTTTCAAATGCTGAGGAATCCCAGACATACATCATTCACATGGATCATTCCCACAAACCTACGTCTTTCGTCACCCACGAAGACTGGCATAGGTCTACCTTAACTTCGTTAATGTCATCTTCATCTCTGGCAGAACAAGAGAACGAAATGTTGTTGTACTCGTACAACCATGTCATGCACGGCTTCAGTGCCAGGCTCACAGTTTCTCAACTGTCCAAATTGGAGAAATCTCCAGCTCATGTTGCTACATACCCGGAGTCTTTTGGCAAGCTCTTCACAACACACAGCTCCAAGTTTCTAGGACTAAGACAGAACTCTGGCTTATTGCTTGCTTCCTCATCTGGCCAAGATGTGATCATAGGAATCATAGATACCGGAGTTTGGCCAGAGAGCGAGAGTTTTAGTGATAGAGGAATGTCTGAAGTGCCAAAAAGATGGAAAGGCACTTGCGAGAATGGAACAGATTTCAGCCCATCTCTCTGCAACAACAAGCTCATTGGGGCTCGATCCTTTAGCAAAGGCCTGAAAGCAGCAGGAATTAAAATCTCCACAAAATATGACTTTGATTCACCACGGGACTGGTTTGGTCATGGAAGTCACACTTCGTCAACAGCTGCAGGTAACCATGTACCCGGCGCAAGTCATTTCGGATATGCAAAAGGCACAGCAAGAGGGGTGGCACCACGAGCCCATGTTGCCATGTACAAGGTCCTGTGGGCAACAGACTCGGAAAAAAGTGCAGCTAGTGATGTGCTTGCAGGCATGGACCAAGCAATTTCTGATGGTGTTGATATAATGTCACTGTCTCTTGGCTTTGACTTCCTTCCTTATTTCAACGATGTCATTGCCATTGCTTCTCTTTCAGCAATTGAAAAGGGAATTGTTGTGGTCTGTGCTGCTGGAAATGACGGGGCTTACAATACAACATACAACGGAGCACCCTGGATCACAACAGTAGGGGCCGGCACTCTTGATCGCACTTTCACTGCAACACTGACTTTAGATAATGGTTTGACAGTTGAAGGAACATCATACTTCCCAGAGAGCGTTTACATTACTGATGCGCCATTGTACTACGGCAAAGACAATGCAAACAAAGCAATATGCAATATTGGGGCACTGGATCATAAAGAAGTGAAGGGAAAGGTGGTCATCTGTGAGAATACCACTGAGACTGATGTGGAAGGACAAAAGGAAGAGGTACAGAGGGCAGGTGGTTATGCTGGAATCTTCATGACAGATCTCTCATTTTTAGACCCAGAAGACTTCTCCATTCCTGCTATCATTGTTCCATTTGCTGCAGGGGCCTTGATTAGAGAGTATGCAACACAGGCCAATGCAACTCGAGTTAAGACCCTGAGTTTTGTGCACACAAATTTGGGTACAAAACCATCACCGGAAGTAGCGTATTTCTCTTCAAGAGGACCAGACCCAGTCACTCCGGGTATCCTAAAACCAGACGTTCTTGCTCCAGGAGTCGACGTGCTGGCTGCATATATACCTAACAGGGGGTTCATGGAAGTACACAAGTATGATTTAGAGACAGATTATGCACTATTATCAGGGACATCAATGGCAGCACCCCATGTTGCCGGAGTGGCGGCTCTGCTGAAGGCTGTTCACCGAGAATGGAGTCCGGCAGCCATCCGATCGGCCATCATGACCACAGCATACTCGAGCGACAATTCTCAAACCACCATAAAAGACCAATGGTCTGGTCTTCCCGCCACTCCTTTAGATTTTGGTGCGGGCCACATCAACCCAAACAAAGCCATGAACCCTGGACTAATCTATGACATGGATGTGCAGGATTACATTGAGTTTCTATGTGGCCTTGGGTATAATGCCAAGCAAATGAAAGCTGTTATCAGACGAAGCCAGTGGTATTGCAGCTCAAAACCTGCCGAACTAAACTACCCTTCTTTCATGGCCATTTTTAACAGAACAGACTCTCCGAATGCCAAGAACTTCAGCAGGGTTGTGACAAACGTAGGGGATGATACATCAACCTACCAAGCATATTTAGAAGTTCCAAAAGGAATGAGGATTACAGTACAGCCTAGTACCCTAGTATTCACAGGTAAAAACCAAGAGCAGGGTTTCACTTTGAGCGTAGAGGTCGATAGCGATGCCCCGAATGTGATCTATGGTTATCTAGCATGGATTGACCAGTATAACCACATAGTATCAAGCCCTGTAGTAGCAATTAACTACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Inhibitor_I9 PA Peptidase_S8

Protein Analysis

758

Amino Acids

82.28

Weight (kDa)

5.59

Isoelectric Point (pI)

38.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Inhibitor_I9	PF05922	29 - 108	3.8e-17	Peptidase inhibitor I9
Peptidase_S8	PF00082	135 - 583	1.1e-44	Subtilase family
fn3_6	PF17766	656 - 754	5.2e-25	Fibronectin type-III domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002861)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g34120 FvH4_2g34130 FvH4_2g34150 FvH4_2g34210 FvH4_2g34211 FvH4_2g34212
malus_domestica	MD05G1275700.v1.1 MD05G1275800.v1.1 MD08G1098000.v1.1 MD15G1080200.v1.1 MD15G1080300.v1.1
prunus_persica	Prupe.1G433100_v2.0.a1 Prupe.1G433200_v2.0.a1
pyrus_communis	pycom15g07460
rosa_chinensis	RchiOBHm_Chr6g0308201 RchiOBHm_Chr6g0308211 RchiOBHm_Chr6g0308221
rosa_laevigata	RLG00000010657 RLG00000010658 RLG00000010659
rosa_multiflora	Rmu_sc0005706.1_g000017 Rmu_sc0005706.1_g000018 Rmu_ssc0000355.1_g000001 Rmu_ssc0000355.1_g000006
rosa_roxburghii	Rroxscaffold_7G00160340 Rroxscaffold_7G00160360 Rroxscaffold_7G00160440 Rroxscaffold_7G00160450
rosa_rugosa	Rorug01G0005200 Rorug01G0066300 Rorug06G0364700 Rorug06G0364800 Rorug06G0364900
rosa_samantha	Rh6DG475900 Rh6DG476100 Rh6DG476300
rosa_wichuraiana	Rw6G041330 Rw6G041340 Rw6G041350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1262
Acc36I	ACCTGC	3 cut(s)	668, 1262, 1969
AccB1I	GGYRCC	1 cut(s)	739
AccI	GTMKAC	2 cut(s)	155, 1539
AciI	CCGC	3 cut(s)	1661, 1785, 1808
AclWI	GGATC	4 cut(s)	111, 561, 1013, 1191
AcoI	YGGCCR	4 cut(s)	403, 443, 1713, 1989
AcsI	RAATTY	1 cut(s)	1435
AcuI	CTGAAG	4 cut(s)	229, 501, 1691, 2014
AfiI	CCNNNNNNNGG	3 cut(s)	441, 1568, 2155
AgsI	TTSAA	5 cut(s)	66, 895, 932, 1082, 1479
AhdI	GACNNNNNGTC	1 cut(s)	1771
AjiI	CACGTC	1 cut(s)	1543
AjnI	CCWGG	4 cut(s)	251, 1001, 1531, 1840
AloI	GAACNNNNNNTCC	2 cut(s)	1996, 2028
AluBI	AGCT	8 cut(s)	296, 331, 348, 553, 674, 803, 1922, 1953
AluI	AGCT	8 cut(s)	296, 331, 348, 553, 674, 803, 1922, 1953
Alw21I	GWGCWC	2 cut(s)	1000, 1431
Alw26I	GTCTC	3 cut(s)	870, 1226, 1595
Alw44I	GTGCAC	1 cut(s)	1427
AlwI	GGATC	4 cut(s)	111, 561, 1013, 1191
Ama87I	CYCGRG	2 cut(s)	1404, 1735
ApaLI	GTGCAC	1 cut(s)	1427
ApeKI	GCWGC	9 cut(s)	590, 674, 800, 956, 1358, 1550, 1637, 1700, 1950
ApoI	RAATTY	1 cut(s)	1435
AspLEI	GCGC	2 cut(s)	698, 1126
AspS9I	GGNCC	6 cut(s)	769, 826, 1020, 1365, 1484, 1810
AsuC2I	CCSGG	3 cut(s)	314, 693, 1503
AsuHPI	GGTGA	4 cut(s)	124, 621, 1446, 1673
AvaI	CYCGRG	2 cut(s)	1404, 1735
AvaII	GGWCC	3 cut(s)	769, 826, 1484
BaeGI	GKGCMC	2 cut(s)	1180, 1431
BaeI	ACNNNNGTAYC	2 cut(s)	423, 456
BalI	TGGCCA	3 cut(s)	405, 445, 1991
BanI	GGYRCC	1 cut(s)	739
BanII	GRGCYC	2 cut(s)	565, 751
BauI	CACGAG	1 cut(s)	744
BbsI	GAAGAC	3 cut(s)	147, 1329, 1772
Bbv12I	GWGCWC	2 cut(s)	1000, 1431
BbvCI	CCTCAGC	1 cut(s)	72
BbvI	GCAGC	9 cut(s)	602, 661, 812, 943, 1345, 1537, 1649, 1712, 1962
BccI	CCATC	6 cut(s)	489, 541, 836, 1459, 1712, 1724
BceAI	ACGGC	2 cut(s)	256, 1153
BcgI	CGANNNNNNTGC	6 cut(s)	768, 802, 887, 921, 2171, 2205
BciT130I	CCWGG	4 cut(s)	253, 1003, 1533, 1842
BciVI	GTATCC	1 cut(s)	1517
BclI	TGATCA	1 cut(s)	414
BcnI	CCSGG	3 cut(s)	314, 693, 1503
BcoDI	GTCTC	3 cut(s)	870, 1226, 1595
BfaI	CTAG	6 cut(s)	359, 804, 2121, 2129, 2216, 2275
BfmI	CTRYAG	4 cut(s)	10, 675, 1359, 2256
BfuAI	ACCTGC	3 cut(s)	668, 1262, 1969
BfuI	GTATCC	1 cut(s)	1517
BglI	GCCNNNNNGGC	1 cut(s)	1658
BglII	AGATCT	1 cut(s)	1300
Bme1390I	CCNGG	7 cut(s)	253, 314, 693, 1003, 1503, 1533, 1842
Bme18I	GGWCC	3 cut(s)	769, 826, 1484
BmeRI	GACNNNNNGTC	1 cut(s)	1771
BmeT110I	CYCGRG	2 cut(s)	1404, 1735
BmgBI	CACGTC	1 cut(s)	1543
BmgT120I	GGNCC	6 cut(s)	769, 826, 1020, 1365, 1484, 1810
BmiI	GGNNCC	3 cut(s)	741, 1021, 1366
BmrFI	CCNGG	7 cut(s)	253, 314, 693, 1003, 1503, 1533, 1842
BmrI	ACTGGG	1 cut(s)	1487
BmsI	GCATC	2 cut(s)	1111, 2179
BmuI	ACTGGG	1 cut(s)	1487
BpiI	GAAGAC	3 cut(s)	147, 1329, 1772
BpmI	CTGGAG	2 cut(s)	276, 1515
Bpu10I	CCTNAGC	1 cut(s)	72
BpuMI	CCSGG	3 cut(s)	314, 693, 1503
BsaJI	CCNNGG	4 cut(s)	632, 1001, 1840, 1894
BsaWI	WCCGGW	2 cut(s)	434, 1456
BsaXI	ACNNNNNCTCC	4 cut(s)	1527, 1557, 1996, 2026
Bsc4I	CCNNNNNNNGG	3 cut(s)	441, 1568, 2155
Bse118I	RCCGGY	1 cut(s)	1022
Bse1I	ACTGG	6 cut(s)	149, 644, 1185, 1493, 1939, 2230
Bse3DI	GCAATG	2 cut(s)	903, 909
BseBI	CCWGG	4 cut(s)	253, 1003, 1533, 1842
BseDI	CCNNGG	4 cut(s)	632, 1001, 1840, 1894
BseGI	GGATG	3 cut(s)	1704, 1867, 2062
BseLI	CCNNNNNNNGG	3 cut(s)	441, 1568, 2155
BseMI	GCAATG	2 cut(s)	903, 909
BseMII	CTCAG	3 cut(s)	63, 1221, 1409
BseNI	ACTGG	6 cut(s)	149, 644, 1185, 1493, 1939, 2230
BseSI	GKGCMC	2 cut(s)	1180, 1431
BseXI	GCAGC	9 cut(s)	602, 661, 812, 943, 1345, 1537, 1649, 1712, 1962
BsgI	GTGCAG	3 cut(s)	29, 819, 1886
Bsh1285I	CGRYCG	1 cut(s)	1712
BshNI	GGYRCC	1 cut(s)	739
BsiEI	CGRYCG	1 cut(s)	1712
BsiHKAI	GWGCWC	2 cut(s)	1000, 1431
BsiHKCI	CYCGRG	2 cut(s)	1404, 1735
BsiSI	CCGG	8 cut(s)	314, 435, 693, 1023, 1457, 1502, 1653, 1697
BslFI	GGGAC	2 cut(s)	650, 1639
BslI	CCNNNNNNNGG	3 cut(s)	441, 1568, 2155
BsmAI	GTCTC	3 cut(s)	870, 1226, 1595
BsmFI	GGGAC	2 cut(s)	650, 1639
BsmI	GAATGC	1 cut(s)	2023
BsoBI	CYCGRG	2 cut(s)	1404, 1735
Bsp1286I	GDGCHC	5 cut(s)	565, 751, 1000, 1180, 1431
Bsp1407I	TGTACA	1 cut(s)	762
BspACI	CCGC	3 cut(s)	1661, 1785, 1808
BspCNI	CTCAG	3 cut(s)	64, 1222, 1410
BspHI	TCATGA	2 cut(s)	1293, 1719
BspLI	GGNNCC	3 cut(s)	741, 1021, 1366
BspMAI	CTGCAG	2 cut(s)	679, 1363
BspMI	ACCTGC	3 cut(s)	668, 1262, 1969
BspPI	GGATC	4 cut(s)	111, 561, 1013, 1191
BspQI	GCTCTTC	1 cut(s)	338
BspT107I	GGYRCC	1 cut(s)	739
BsrDI	GCAATG	2 cut(s)	903, 909
BsrFI	RCCGGY	1 cut(s)	1022
BsrGI	TGTACA	1 cut(s)	762
BsrI	ACTGG	6 cut(s)	149, 644, 1185, 1493, 1939, 2230
BssAI	RCCGGY	1 cut(s)	1022
BssECI	CCNNGG	4 cut(s)	632, 1001, 1840, 1894
BssSI	CACGAG	1 cut(s)	744
BssT1I	CCWWGG	1 cut(s)	1894
Bst2BI	CACGAG	1 cut(s)	744
Bst2UI	CCWGG	4 cut(s)	253, 1003, 1533, 1842
Bst4CI	ACNGT	7 cut(s)	14, 262, 273, 864, 1015, 1078, 2113
Bst6I	CTCTTC	3 cut(s)	338, 1251, 1480
BstAUI	TGTACA	1 cut(s)	762
BstC8I	GCNNGC	7 cut(s)	329, 390, 816, 820, 1024, 1548, 1810
BstDEI	CTNAG	4 cut(s)	72, 365, 1230, 1418
BstDSI	CCRYGG	1 cut(s)	632
BstEII	GGTNACC	1 cut(s)	680
BstF5I	GGATG	3 cut(s)	1704, 1867, 2062
BstHHI	GCGC	2 cut(s)	698, 1126
BstMAI	GTCTC	3 cut(s)	870, 1226, 1595
BstMCI	CGRYCG	1 cut(s)	1712
BstMWI	GCNNNNNNNGC	7 cut(s)	302, 746, 755, 1157, 1364, 1391, 1658
BstNI	CCWGG	4 cut(s)	253, 1003, 1533, 1842
BstPI	GGTNACC	1 cut(s)	680
BstSCI	CCNGG	7 cut(s)	251, 312, 691, 1001, 1501, 1531, 1840
BstSFI	CTRYAG	4 cut(s)	10, 675, 1359, 2256
BstSLI	GKGCMC	2 cut(s)	1180, 1431
BstV1I	GCAGC	9 cut(s)	602, 661, 812, 943, 1345, 1537, 1649, 1712, 1962
BstV2I	GAAGAC	3 cut(s)	147, 1329, 1772
BstX2I	RGATCY	1 cut(s)	1300
BstXI	CCANNNNNNTGG	3 cut(s)	495, 639, 1775
BstYI	RGATCY	1 cut(s)	1300
BsuI	GTATCC	1 cut(s)	1517
BtgI	CCRYGG	1 cut(s)	632
BtgZI	GCGATG	1 cut(s)	2202
BtrI	CACGTC	1 cut(s)	1543
BtsCI	GGATG	3 cut(s)	1704, 1867, 2062
BtsI	GCAGTG	1 cut(s)	1044
BtsIMutI	CAGTG	7 cut(s)	253, 860, 1044, 1052, 1178, 1227, 1946
BveI	ACCTGC	3 cut(s)	668, 1262, 1969
Cac8I	GCNNGC	7 cut(s)	329, 390, 816, 820, 1024, 1548, 1810
CciI	TCATGA	2 cut(s)	1293, 1719
CfoI	GCGC	2 cut(s)	698, 1126
Cfr10I	RCCGGY	1 cut(s)	1022
Cfr13I	GGNCC	6 cut(s)	769, 826, 1020, 1365, 1484, 1810
CspCI	CAANNNNNGTGG	2 cut(s)	717, 752
DdeI	CTNAG	4 cut(s)	72, 365, 1230, 1418
DriI	GACNNNNNGTC	1 cut(s)	1771
EaeI	YGGCCR	4 cut(s)	403, 443, 1713, 1989
Eam1104I	CTCTTC	3 cut(s)	338, 1251, 1480
Eam1105I	GACNNNNNGTC	1 cut(s)	1771
EarI	CTCTTC	3 cut(s)	338, 1251, 1480
Eco130I	CCWWGG	1 cut(s)	1894
Eco147I	AGGCCT	1 cut(s)	582
Eco24I	GRGCYC	2 cut(s)	565, 751
Eco47I	GGWCC	3 cut(s)	769, 826, 1484
Eco57I	CTGAAG	4 cut(s)	229, 501, 1691, 2014
Eco88I	CYCGRG	2 cut(s)	1404, 1735
Eco91I	GGTNACC	1 cut(s)	680
EcoO109I	RGGNCCY	2 cut(s)	769, 1365
EcoO65I	GGTNACC	1 cut(s)	680
EcoRII	CCWGG	4 cut(s)	251, 1001, 1531, 1840
EcoT14I	CCWWGG	1 cut(s)	1894
EcoT38I	GRGCYC	2 cut(s)	565, 751
ErhI	CCWWGG	1 cut(s)	1894
FalI	AAGNNNNNCTT	2 cut(s)	646, 678
FaqI	GGGAC	2 cut(s)	650, 1639
FauI	CCCGC	2 cut(s)	1792, 1801
FbaI	TGATCA	1 cut(s)	414
FblI	GTMKAC	2 cut(s)	155, 1539
FokI	GGATG	3 cut(s)	1691, 1874, 2069
FriOI	GRGCYC	2 cut(s)	565, 751
FspBI	CTAG	6 cut(s)	359, 804, 2121, 2129, 2216, 2275
GlaI	GCGC	2 cut(s)	697, 1125
GsuI	CTGGAG	2 cut(s)	276, 1515
HapII	CCGG	8 cut(s)	314, 435, 693, 1023, 1457, 1502, 1653, 1697
HhaI	GCGC	2 cut(s)	698, 1126
Hin6I	GCGC	2 cut(s)	696, 1124
HinP1I	GCGC	2 cut(s)	696, 1124
HincII	GTYRAC	2 cut(s)	669, 1540
HindII	GTYRAC	2 cut(s)	669, 1540
HinfI	GANTC	9 cut(s)	77, 317, 423, 626, 785, 1287, 1536, 1693, 2009
HpaII	CCGG	8 cut(s)	314, 435, 693, 1023, 1457, 1502, 1653, 1697
HphI	GGTGA	4 cut(s)	124, 621, 1446, 1673
Hpy166II	GTNNAC	8 cut(s)	36, 156, 669, 1111, 1429, 1540, 1585, 1681
Hpy188I	TCNGA	7 cut(s)	481, 710, 790, 841, 1709, 1931, 2016
Hpy188III	TCNNGA	4 cut(s)	1031, 1294, 1479, 1720
Hpy8I	GTNNAC	8 cut(s)	36, 156, 669, 1111, 1429, 1540, 1585, 1681
Hpy99I	CGWCG	1 cut(s)	1544
HpyAV	CCTTC	6 cut(s)	893, 1076, 1192, 1238, 1666, 1989
HpyCH4III	ACNGT	7 cut(s)	14, 262, 273, 864, 1015, 1078, 2113
HpyCH4IV	ACGT	4 cut(s)	122, 1521, 1542, 2049
HpyF10VI	GCNNNNNNNGC	7 cut(s)	302, 746, 755, 1157, 1364, 1391, 1658
HpyF3I	CTNAG	4 cut(s)	72, 365, 1230, 1418
HpySE526I	ACGT	4 cut(s)	122, 1521, 1542, 2049
HspAI	GCGC	2 cut(s)	696, 1124
KroI	GCCGGC	1 cut(s)	1022
KroNI	GCCGGC	1 cut(s)	1024
Ksp22I	TGATCA	1 cut(s)	414
LguI	GCTCTTC	1 cut(s)	338
LmnI	GCTCC	3 cut(s)	353, 995, 1534
Lsp1109I	GCAGC	9 cut(s)	602, 661, 812, 943, 1345, 1537, 1649, 1712, 1962
LweI	GCATC	2 cut(s)	1111, 2179
MaeI	CTAG	6 cut(s)	359, 804, 2121, 2129, 2216, 2275
MaeII	ACGT	4 cut(s)	122, 1521, 1542, 2049
MaeIII	GTNAC	6 cut(s)	130, 656, 680, 858, 1495, 2041
MboII	GAAGA	8 cut(s)	152, 171, 325, 1268, 1282, 1334, 1467, 1772
MfeI	CAATTG	1 cut(s)	927
MflI	RGATCY	1 cut(s)	1300
MhlI	GDGCHC	5 cut(s)	565, 751, 1000, 1180, 1431
MlsI	TGGCCA	3 cut(s)	405, 445, 1991
MluCI	AATT	8 cut(s)	278, 597, 834, 927, 939, 1435, 1744, 2265
MluNI	TGGCCA	3 cut(s)	405, 445, 1991
MlyI	GAGTC	5 cut(s)	326, 779, 1545, 1702, 2003
MnlI	CCTC	9 cut(s)	67, 406, 464, 725, 1252, 1260, 1475, 2097, 2170
Mox20I	TGGCCA	3 cut(s)	405, 445, 1991
MroNI	GCCGGC	1 cut(s)	1022
MscI	TGGCCA	3 cut(s)	405, 445, 1991
MseI	TTAA	6 cut(s)	161, 170, 600, 1410, 1998, 2268
MslI	CAYNNNNRTG	3 cut(s)	98, 1590, 1862
Msp20I	TGGCCA	3 cut(s)	405, 445, 1991
MspA1I	CMGCKG	1 cut(s)	674
MspI	CCGG	8 cut(s)	314, 435, 693, 1023, 1457, 1502, 1653, 1697
MspR9I	CCNGG	7 cut(s)	253, 314, 693, 1003, 1503, 1533, 1842
MunI	CAATTG	1 cut(s)	927
Mva1269I	GAATGC	1 cut(s)	2023
MvaI	CCWGG	4 cut(s)	253, 1003, 1533, 1842
MwoI	GCNNNNNNNGC	7 cut(s)	302, 746, 755, 1157, 1364, 1391, 1658
NaeI	GCCGGC	1 cut(s)	1024
NciI	CCSGG	3 cut(s)	314, 693, 1503
NgoMIV	GCCGGC	1 cut(s)	1022
NlaIV	GGNNCC	3 cut(s)	741, 1021, 1366
NmuCI	GTSAC	5 cut(s)	130, 656, 858, 1495, 2041
PaeR7I	CTCGAG	2 cut(s)	1404, 1735
PagI	TCATGA	2 cut(s)	1293, 1719
PaqCI	CACCTGC	1 cut(s)	1262
PceI	AGGCCT	1 cut(s)	582
PciSI	GCTCTTC	1 cut(s)	338
PcsI	WCGNNNNNNNCGW	1 cut(s)	135
PctI	GAATGC	1 cut(s)	2023
PdiI	GCCGGC	1 cut(s)	1024
PfeI	GAWTC	4 cut(s)	77, 423, 626, 1287
PflFI	GACNNNGTC	1 cut(s)	1493
PfoI	TCCNGGA	1 cut(s)	1531
Ple19I	CGATCG	1 cut(s)	1712
PleI	GAGTC	5 cut(s)	325, 779, 1544, 1701, 2003
PpsI	GAGTC	5 cut(s)	325, 779, 1544, 1701, 2003
PpuMI	RGGWCCY	1 cut(s)	769
Psp5II	RGGWCCY	1 cut(s)	769
Psp6I	CCWGG	4 cut(s)	251, 1001, 1531, 1840
PspEI	GGTNACC	1 cut(s)	680
PspGI	CCWGG	4 cut(s)	251, 1001, 1531, 1840
PspN4I	GGNNCC	3 cut(s)	741, 1021, 1366
PspPI	GGNCC	6 cut(s)	769, 826, 1020, 1365, 1484, 1810
PspPPI	RGGWCCY	1 cut(s)	769
PspXI	VCTCGAGB	2 cut(s)	1404, 1735
PstI	CTGCAG	2 cut(s)	679, 1363
PsuI	RGATCY	1 cut(s)	1300
PsyI	GACNNNGTC	1 cut(s)	1493
PvuI	CGATCG	1 cut(s)	1712
PvuII	CAGCTG	1 cut(s)	674
RseI	CAYNNNNRTG	3 cut(s)	98, 1590, 1862
SalI	GTCGAC	1 cut(s)	1538
SapI	GCTCTTC	1 cut(s)	338
SaqAI	TTAA	6 cut(s)	161, 170, 600, 1410, 1998, 2268
Sau96I	GGNCC	6 cut(s)	769, 826, 1020, 1365, 1484, 1810
SchI	GAGTC	5 cut(s)	326, 779, 1545, 1702, 2003
ScrFI	CCNGG	7 cut(s)	253, 314, 693, 1003, 1503, 1533, 1842
SduI	GDGCHC	5 cut(s)	565, 751, 1000, 1180, 1431
SfaNI	GCATC	2 cut(s)	1111, 2179
SfcI	CTRYAG	4 cut(s)	10, 675, 1359, 2256
Sfr274I	CTCGAG	2 cut(s)	1404, 1735
SinI	GGWCC	3 cut(s)	769, 826, 1484
SlaI	CTCGAG	2 cut(s)	1404, 1735
SmiMI	CAYNNNNRTG	3 cut(s)	98, 1590, 1862
SmlI	CTYRAG	2 cut(s)	1404, 1735
SmoI	CTYRAG	2 cut(s)	1404, 1735
Sse9I	AATT	8 cut(s)	278, 597, 834, 927, 939, 1435, 1744, 2265
SseBI	AGGCCT	1 cut(s)	582
SsiI	CCGC	3 cut(s)	1661, 1785, 1808
SspI	AATATT	1 cut(s)	1171
SspMI	CTAG	6 cut(s)	359, 804, 2121, 2129, 2216, 2275
StuI	AGGCCT	1 cut(s)	582
StyD4I	CCNGG	7 cut(s)	251, 312, 691, 1001, 1501, 1531, 1840
StyI	CCWWGG	1 cut(s)	1894
TaaI	ACNGT	7 cut(s)	14, 262, 273, 864, 1015, 1078, 2113
TaiI	ACGT	4 cut(s)	125, 1524, 1545, 2052
TaqI	TCGA	5 cut(s)	565, 1405, 1539, 1736, 2181
TasI	AATT	8 cut(s)	278, 597, 834, 927, 939, 1435, 1744, 2265
TatI	WGTACW	5 cut(s)	216, 762, 1131, 1582, 2113
TauI	GCSGC	1 cut(s)	1664
TfiI	GAWTC	4 cut(s)	77, 423, 626, 1287
Tru1I	TTAA	6 cut(s)	161, 170, 600, 1410, 1998, 2268
Tru9I	TTAA	6 cut(s)	161, 170, 600, 1410, 1998, 2268
TscAI	CASTG	7 cut(s)	253, 867, 1051, 1059, 1185, 1234, 1946
TseFI	GTSAC	5 cut(s)	130, 656, 858, 1495, 2041
TseI	GCWGC	9 cut(s)	590, 674, 800, 956, 1358, 1550, 1637, 1700, 1950
Tsp45I	GTSAC	5 cut(s)	130, 656, 858, 1495, 2041
TspDTI	ATGAA	6 cut(s)	171, 1282, 1564, 1850, 1931, 1975
TspGWI	ACGGA	1 cut(s)	1008
TspRI	CASTG	7 cut(s)	253, 867, 1051, 1059, 1185, 1234, 1946
Tth111I	GACNNNGTC	1 cut(s)	1493
VneI	GTGCAC	1 cut(s)	1427
VpaK11BI	GGWCC	3 cut(s)	769, 826, 1484
XapI	RAATTY	1 cut(s)	1435
XhoI	CTCGAG	2 cut(s)	1404, 1735
XmiI	GTMKAC	2 cut(s)	155, 1539
XspI	CTAG	6 cut(s)	359, 804, 2121, 2129, 2216, 2275

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.