Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0001728

Physical Location & Seq

Genomic Coordinates Forward (+)

25673823 .. 25674558

Gene Structure 736 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g34630.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 573 bp

ATGTTTTTAGTAGGTGTTTCATTGTTTAGGATAGAGCTCCCTGCCATGGCGCTTGGCAATAACTCCATTCGTGAAACTCACTATGACATACTATCTGTTAAGGAAGATGCAAGCTATGAAGATATCAGAACAAGCTACAGATCTGCCATCCTTAATAGTCATCCTGATAAACTGCAAGCTACATCTGAGTCGGGAGATAGGTTCTTGAAGGTGCAAAAGGCTTGGGAAATCCTCAGTGATACGAGGTCTCGTGCACTTTATGACAACATGCTAATAGCTTCTAGACACGACACTTTTGTAGCAGATGATATCAGCTTAGAAGATGTGATGGCCGAAGACGCAGGAGAGGTCATTCAACTCTTTTACCAGTGTCGCTGTGGGGATTATTACTTTGTTGATTCTTCTGAGTTGGAGAAAATGGGGTACTCTTTGTTGAGAGATGGTAGCAAGTTATCTTTTGAGGCACAAACTGCTCTGCCAGCATCACTAGTCCTCCCTTGTGGGTCTTGTTCTTTGAAAGTTCGTATATTGATCAATCCAGACGATTTTGTGTCTATTGATCATCATCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006417 GO:0006448 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0010608 GO:0017182 GO:0017183 GO:0018193 GO:0018202 GO:0019222 GO:0019538 GO:0031323 GO:0031326 GO:0032268 GO:0034248 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0050789 GO:0050794 GO:0051171 GO:0051246 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:1900247 GO:1901564 GO:2000112 GO:2000765

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DnaJ zf-CSL

Protein Analysis

191

Amino Acids

21.41

Weight (kDa)

4.73

Isoelectric Point (pI)

42.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DnaJ	PF00226	26 - 88	2.2e-18	DnaJ domain
Zn_ribbon_CSL	PF05207	102 - 177	1.8e-09	CSL zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001728)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G10130 AT4G10130 AT4G10130 AT4G10130 AT4G10130
fragaria_vesca	FvH4_2g34630
malus_domestica	MD08G1103500.v1.1 MD08G1103600.v1.1 MD15G1084800.v1.1 MD15G1084900.v1.1
prunus_persica	Prupe.1G438600_v2.0.a1 Prupe.1G438700_v2.0.a1
pyrus_communis	pycom08g08490 pycom08g08500 pycom15g08020
rosa_chinensis	RchiOBHm_Chr5g0002021 RchiOBHm_Chr6g0307441 RchiOBHm_Chr6g0307451 RchiOBHm_Chr7g0208301
rosa_laevigata	RLG00000003231 RLG00000010712 RLG00000010713
rosa_multiflora	Rmu_sc0000031.1_g000018 Rmu_sc0000841.1_g000020 Rmu_sc0007869.1_g000024
rosa_roxburghii	Rroxscaffold_3G00250600 Rroxscaffold_7G00160990
rosa_rugosa	Rorug01G0242800 Rorug04G0397800 Rorug06G0145700 Rorug06G0358700 Rorug06G0358700 Rorug07G0102800 Rorug07G0102800 Rorug07G0102900.1
rosa_samantha	Rh1BG163200 Rh1DG193900 Rh6BG430400 Rh6CG484400 Rh6CG484500 Rh6DG471100 Rh6DG471200 Rh7AG237200 Rh7BG232700 Rh7CG253100 Rh7DG243200
rosa_wichuraiana	Rw6G040910 Rw7G020240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	1 cut(s)	330
AfaI	GTAC	1 cut(s)	425
AfiI	CCNNNNNNNGG	1 cut(s)	46
AgsI	TTSAA	3 cut(s)	208, 356, 517
AhlI	ACTAGT	1 cut(s)	487
AluBI	AGCT	6 cut(s)	37, 114, 135, 179, 278, 315
AluI	AGCT	6 cut(s)	37, 114, 135, 179, 278, 315
Alw21I	GWGCWC	2 cut(s)	39, 256
Alw26I	GTCTC	1 cut(s)	252
Alw44I	GTGCAC	1 cut(s)	252
AoxI	GGCC	1 cut(s)	330
ApaLI	GTGCAC	1 cut(s)	252
AspLEI	GCGC	1 cut(s)	52
BaeGI	GKGCMC	1 cut(s)	256
BanII	GRGCYC	1 cut(s)	39
BauI	CACGAG	1 cut(s)	249
BbsI	GAAGAC	1 cut(s)	342
Bbv12I	GWGCWC	2 cut(s)	39, 256
BccI	CCATC	3 cut(s)	155, 322, 434
BclI	TGATCA	2 cut(s)	531, 559
BcoDI	GTCTC	1 cut(s)	252
BcuI	ACTAGT	1 cut(s)	487
BfaI	CTAG	2 cut(s)	282, 488
BfmI	CTRYAG	1 cut(s)	136
BfoI	RGCGCY	1 cut(s)	53
BglII	AGATCT	1 cut(s)	140
BmsI	GCATC	2 cut(s)	97, 491
BpiI	GAAGAC	1 cut(s)	342
BsaBI	GATNNNNATC	1 cut(s)	564
BsaI	GGTCTC	1 cut(s)	252
BsaJI	CCNNGG	1 cut(s)	45
BsaXI	ACNNNNNCTCC	2 cut(s)	477, 507
Bsc4I	CCNNNNNNNGG	1 cut(s)	46
Bse1I	ACTGG	1 cut(s)	367
Bse8I	GATNNNNATC	1 cut(s)	564
BseDI	CCNNGG	1 cut(s)	45
BseGI	GGATG	2 cut(s)	147, 160
BseJI	GATNNNNATC	1 cut(s)	564
BseLI	CCNNNNNNNGG	1 cut(s)	46
BseMII	CTCAG	3 cut(s)	177, 247, 396
BseNI	ACTGG	1 cut(s)	367
BseSI	GKGCMC	1 cut(s)	256
BshFI	GGCC	1 cut(s)	332
BsiHKAI	GWGCWC	2 cut(s)	39, 256
BslI	CCNNNNNNNGG	1 cut(s)	46
BsmAI	GTCTC	1 cut(s)	252
BsnI	GGCC	1 cut(s)	332
Bso31I	GGTCTC	1 cut(s)	252
Bsp1286I	GDGCHC	2 cut(s)	39, 256
Bsp143I	GATC	3 cut(s)	140, 531, 559
Bsp19I	CCATGG	1 cut(s)	45
BspANI	GGCC	1 cut(s)	332
BspCNI	CTCAG	3 cut(s)	178, 246, 397
BspTNI	GGTCTC	1 cut(s)	252
BsrI	ACTGG	1 cut(s)	367
BssECI	CCNNGG	1 cut(s)	45
BssMI	GATC	3 cut(s)	140, 531, 559
BssSI	CACGAG	1 cut(s)	249
BssT1I	CCWWGG	1 cut(s)	45
Bst2BI	CACGAG	1 cut(s)	249
BstAPI	GCANNNNNTGC	1 cut(s)	470
BstC8I	GCNNGC	3 cut(s)	112, 177, 480
BstDEI	CTNAG	4 cut(s)	186, 233, 316, 405
BstDSI	CCRYGG	1 cut(s)	45
BstF5I	GGATG	2 cut(s)	147, 160
BstH2I	RGCGCY	1 cut(s)	53
BstHHI	GCGC	1 cut(s)	52
BstKTI	GATC	3 cut(s)	143, 534, 562
BstMAI	GTCTC	1 cut(s)	252
BstMBI	GATC	3 cut(s)	140, 531, 559
BstMWI	GCNNNNNNNGC	3 cut(s)	338, 470, 479
BstNSI	RCATGY	1 cut(s)	271
BstSFI	CTRYAG	1 cut(s)	136
BstSLI	GKGCMC	1 cut(s)	256
BstV2I	GAAGAC	1 cut(s)	342
BstX2I	RGATCY	1 cut(s)	140
BstYI	RGATCY	1 cut(s)	140
BsuRI	GGCC	1 cut(s)	332
BtgI	CCRYGG	1 cut(s)	45
BtsCI	GGATG	2 cut(s)	147, 160
BtsIMutI	CAGTG	2 cut(s)	241, 374
Cac8I	GCNNGC	3 cut(s)	112, 177, 480
CfoI	GCGC	1 cut(s)	52
CseI	GACGC	1 cut(s)	347
Csp6I	GTAC	1 cut(s)	424
CviAII	CATG	2 cut(s)	46, 268
CviJI	RGCY	8 cut(s)	37, 114, 135, 179, 221, 278, 315, 332
CviKI_1	RGCY	8 cut(s)	37, 114, 135, 179, 221, 278, 315, 332
CviQI	GTAC	1 cut(s)	424
DdeI	CTNAG	4 cut(s)	186, 233, 316, 405
DpnI	GATC	3 cut(s)	142, 533, 561
DpnII	GATC	3 cut(s)	140, 531, 559
EaeI	YGGCCR	1 cut(s)	330
Ecl136II	GAGCTC	1 cut(s)	37
Eco130I	CCWWGG	1 cut(s)	45
Eco24I	GRGCYC	1 cut(s)	39
Eco31I	GGTCTC	1 cut(s)	252
Eco32I	GATATC	2 cut(s)	124, 310
Eco53kI	GAGCTC	1 cut(s)	37
EcoICRI	GAGCTC	1 cut(s)	37
EcoRV	GATATC	2 cut(s)	124, 310
EcoT14I	CCWWGG	1 cut(s)	45
EcoT38I	GRGCYC	1 cut(s)	39
ErhI	CCWWGG	1 cut(s)	45
FaeI	CATG	2 cut(s)	49, 271
FaiI	YATR	7 cut(s)	47, 84, 89, 117, 261, 269, 527
FatI	CATG	2 cut(s)	45, 267
FbaI	TGATCA	2 cut(s)	531, 559
FokI	GGATG	2 cut(s)	134, 147
FriOI	GRGCYC	1 cut(s)	39
FspBI	CTAG	2 cut(s)	282, 488
GlaI	GCGC	1 cut(s)	51
HaeII	RGCGCY	1 cut(s)	53
HaeIII	GGCC	1 cut(s)	332
HgaI	GACGC	1 cut(s)	347
HhaI	GCGC	1 cut(s)	52
Hin1II	CATG	2 cut(s)	49, 271
Hin6I	GCGC	1 cut(s)	50
HinP1I	GCGC	1 cut(s)	50
HinfI	GANTC	2 cut(s)	188, 398
Hpy166II	GTNNAC	1 cut(s)	254
Hpy188I	TCNGA	3 cut(s)	128, 187, 406
Hpy188III	TCNNGA	6 cut(s)	71, 164, 192, 205, 282, 539
Hpy8I	GTNNAC	1 cut(s)	254
HpyAV	CCTTC	1 cut(s)	202
HpyCH4V	TGCA	4 cut(s)	110, 175, 214, 254
HpyF10VI	GCNNNNNNNGC	3 cut(s)	338, 470, 479
HpyF3I	CTNAG	4 cut(s)	186, 233, 316, 405
Hsp92II	CATG	2 cut(s)	49, 271
HspAI	GCGC	1 cut(s)	50
Ksp22I	TGATCA	2 cut(s)	531, 559
Kzo9I	GATC	3 cut(s)	140, 531, 559
LmnI	GCTCC	1 cut(s)	42
LpnPI	CCDG	6 cut(s)	54, 177, 327, 380, 492, 552
LweI	GCATC	2 cut(s)	97, 491
MaeI	CTAG	2 cut(s)	282, 488
MalI	GATC	3 cut(s)	142, 533, 561
MboI	GATC	3 cut(s)	140, 531, 559
MboII	GAAGA	5 cut(s)	116, 131, 332, 347, 393
MflI	RGATCY	1 cut(s)	140
MhlI	GDGCHC	2 cut(s)	39, 256
MlyI	GAGTC	1 cut(s)	197
MmeI	TCCRAC	1 cut(s)	390
MnlI	CCTC	5 cut(s)	237, 242, 340, 454, 503
MseI	TTAA	2 cut(s)	99, 153
MwoI	GCNNNNNNNGC	3 cut(s)	338, 470, 479
NcoI	CCATGG	1 cut(s)	45
NdeII	GATC	3 cut(s)	140, 531, 559
NlaIII	CATG	2 cut(s)	49, 271
NspI	RCATGY	1 cut(s)	271
PfeI	GAWTC	1 cut(s)	398
PleI	GAGTC	1 cut(s)	196
PpsI	GAGTC	1 cut(s)	196
Psp124BI	GAGCTC	1 cut(s)	39
PsuI	RGATCY	1 cut(s)	140
RsaI	GTAC	1 cut(s)	425
RsaNI	GTAC	1 cut(s)	424
SacI	GAGCTC	1 cut(s)	39
SaqAI	TTAA	2 cut(s)	99, 153
Sau3AI	GATC	3 cut(s)	140, 531, 559
SchI	GAGTC	1 cut(s)	197
SduI	GDGCHC	2 cut(s)	39, 256
SfaNI	GCATC	2 cut(s)	97, 491
SfcI	CTRYAG	1 cut(s)	136
SpeI	ACTAGT	1 cut(s)	487
SspMI	CTAG	2 cut(s)	282, 488
SstI	GAGCTC	1 cut(s)	39
StyI	CCWWGG	1 cut(s)	45
TfiI	GAWTC	1 cut(s)	398
Tru1I	TTAA	2 cut(s)	99, 153
Tru9I	TTAA	2 cut(s)	99, 153
TscAI	CASTG	2 cut(s)	241, 374
TspDTI	ATGAA	2 cut(s)	9, 132
TspRI	CASTG	2 cut(s)	241, 374
VneI	GTGCAC	1 cut(s)	252
XbaI	TCTAGA	1 cut(s)	281
XceI	RCATGY	1 cut(s)	271
XcmI	CCANNNNNNNNNTGG	1 cut(s)	374
XspI	CTAG	2 cut(s)	282, 488

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.