Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr08

Orthogroup ID

OG0001728

Physical Location & Seq

Genomic Coordinates Forward (+)

8761335 .. 8763213

Gene Structure 1879 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD08G1103500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 729 bp

ATGCCCAAAGTGAAATTTAATTTCGCTGCCTCTCAAAGCGATTCCAATCCGCGCTATTCTTTGCCCACCATTATTGATGTGATCGCGCGCGAGATTGGATCTTGCTCGGCCCACGAAGTGAAGATAATGTGGTGGCAAGTAGCTACAACCATGGCTCTTGGCAGCCACCCCATTCAGGATACTCACTATGACATACTATCGGTGAAACAAGATGCAAGCTATGAAGTTATTCGAGCAAGCTACCGATCTGCCATCCTTGATAGTCATCCTGATAAATTGCAAAGTACATCTGGGTCGGGAGATAGATTCCTGAAGGTGCAAAAGGCTTGGGAAATCCTTGGCCATTCAAGGTCTCGCGCACTTTATGATAGTGCGATTCTCGATTCTAGTCATGACGCTATGGTGGCAGAAGATATCAGCCTAGAAGATGTGATGGTTGAAGATGCGGGAGAGGTCATTCAACTCTTTTACCAGTGCCGGTGCAGTGACTATTTCTTCGTTGATTCTTTGGAGTTGGAGAAGATGGGGTATGCTTTATTAAAAGATGGAAACAAGATATCTTTCGAAGCACAGAATGCATTGCCAGCATCGCTTGTCCTCCCTTGCGGGTCTTGTTCTTTGAAAGTTCGGATATTGATCAATTCAGATGACTTTATTACGATCATTGATGACCATCGAATGGGGGACGAAGTTTTCTCTGAAGATTTTAGTTTCAACAGCTTAAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006417 GO:0006448 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0010608 GO:0017182 GO:0017183 GO:0018193 GO:0018202 GO:0019222 GO:0019538 GO:0031323 GO:0031326 GO:0032268 GO:0034248 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0050789 GO:0050794 GO:0051171 GO:0051246 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:1900247 GO:1901564 GO:2000112 GO:2000765

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DnaJ zf-CSL

Protein Analysis

243

Amino Acids

27.08

Weight (kDa)

4.81

Isoelectric Point (pI)

42.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DnaJ	PF00226	61 - 123	1.6e-15	DnaJ domain
Zn_ribbon_CSL	PF05207	138 - 212	6.8e-08	CSL zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001728)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G10130 AT4G10130 AT4G10130 AT4G10130 AT4G10130
fragaria_vesca	FvH4_2g34630
malus_domestica	MD08G1103500.v1.1 MD08G1103600.v1.1 MD15G1084800.v1.1 MD15G1084900.v1.1
prunus_persica	Prupe.1G438600_v2.0.a1 Prupe.1G438700_v2.0.a1
pyrus_communis	pycom08g08490 pycom08g08500 pycom15g08020
rosa_chinensis	RchiOBHm_Chr5g0002021 RchiOBHm_Chr6g0307441 RchiOBHm_Chr6g0307451 RchiOBHm_Chr7g0208301
rosa_laevigata	RLG00000003231 RLG00000010712 RLG00000010713
rosa_multiflora	Rmu_sc0000031.1_g000018 Rmu_sc0000841.1_g000020 Rmu_sc0007869.1_g000024
rosa_roxburghii	Rroxscaffold_3G00250600 Rroxscaffold_7G00160990
rosa_rugosa	Rorug01G0242800 Rorug04G0397800 Rorug06G0145700 Rorug06G0358700 Rorug06G0358700 Rorug07G0102800 Rorug07G0102800 Rorug07G0102900.1
rosa_samantha	Rh1BG163200 Rh1DG193900 Rh6BG430400 Rh6CG484400 Rh6CG484500 Rh6DG471100 Rh6DG471200 Rh7AG237200 Rh7BG232700 Rh7CG253100 Rh7DG243200
rosa_wichuraiana	Rw6G040910 Rw7G020240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	679
AccII	CGCG	5 cut(s)	52, 86, 88, 90, 357
AciI	CCGC	3 cut(s)	50, 446, 606
AclWI	GGATC	1 cut(s)	106
AcoI	YGGCCR	1 cut(s)	340
AcsI	RAATTY	1 cut(s)	14
AcuI	CTGAAG	2 cut(s)	332, 720
AdeI	CACNNNGTG	1 cut(s)	118
AfaI	GTAC	1 cut(s)	286
AfiI	CCNNNNNNNGG	2 cut(s)	175, 679
AgsI	TTSAA	5 cut(s)	348, 440, 461, 622, 715
AluBI	AGCT	4 cut(s)	143, 219, 240, 720
AluI	AGCT	4 cut(s)	143, 219, 240, 720
Alw26I	GTCTC	1 cut(s)	357
AlwI	GGATC	1 cut(s)	106
AoxI	GGCC	2 cut(s)	108, 340
ApeKI	GCWGC	2 cut(s)	26, 162
ApoI	RAATTY	1 cut(s)	14
ArsI	GACNNNNNNTTYG	2 cut(s)	479, 511
Asp700I	GAANNNNTTC	1 cut(s)	228
AspLEI	GCGC	4 cut(s)	54, 88, 90, 359
AspS9I	GGNCC	1 cut(s)	109
AsuHPI	GGTGA	1 cut(s)	214
AsuII	TTCGAA	1 cut(s)	564
BalI	TGGCCA	1 cut(s)	342
BbvI	GCAGC	2 cut(s)	13, 174
BccI	CCATC	5 cut(s)	260, 427, 517, 539, 681
BciVI	GTATCC	1 cut(s)	172
BclI	TGATCA	1 cut(s)	636
BcoDI	GTCTC	1 cut(s)	357
BfaI	CTAG	2 cut(s)	387, 422
BfuI	GTATCC	1 cut(s)	172
BisI	GCNGC	2 cut(s)	27, 163
BlsI	GCNGC	2 cut(s)	28, 164
BmgT120I	GGNCC	1 cut(s)	109
BmsI	GCATC	3 cut(s)	202, 433, 596
Bpu14I	TTCGAA	1 cut(s)	564
BsaBI	GATNNNNATC	4 cut(s)	45, 264, 635, 672
BsaI	GGTCTC	1 cut(s)	357
BsaJI	CCNNGG	2 cut(s)	150, 337
Bsc4I	CCNNNNNNNGG	2 cut(s)	175, 679
Bse118I	RCCGGY	1 cut(s)	477
Bse1I	ACTGG	1 cut(s)	472
Bse3DI	GCAATG	1 cut(s)	578
Bse8I	GATNNNNATC	4 cut(s)	45, 264, 635, 672
BseDI	CCNNGG	2 cut(s)	150, 337
BseGI	GGATG	2 cut(s)	252, 265
BseJI	GATNNNNATC	4 cut(s)	45, 264, 635, 672
BseLI	CCNNNNNNNGG	2 cut(s)	175, 679
BseMI	GCAATG	1 cut(s)	578
BseNI	ACTGG	1 cut(s)	472
BsePI	GCGCGC	1 cut(s)	86
BseXI	GCAGC	2 cut(s)	13, 174
BsgI	GTGCAG	1 cut(s)	502
Bsh1236I	CGCG	5 cut(s)	52, 86, 88, 90, 357
BshFI	GGCC	2 cut(s)	110, 342
BsiSI	CCGG	1 cut(s)	478
BslFI	GGGAC	1 cut(s)	698
BslI	CCNNNNNNNGG	2 cut(s)	175, 679
BsmAI	GTCTC	1 cut(s)	357
BsmFI	GGGAC	1 cut(s)	698
BsmI	GAATGC	1 cut(s)	580
BsnI	GGCC	2 cut(s)	110, 342
Bso31I	GGTCTC	1 cut(s)	357
Bsp119I	TTCGAA	1 cut(s)	564
Bsp143I	GATC	5 cut(s)	81, 98, 245, 636, 660
Bsp19I	CCATGG	1 cut(s)	150
BspACI	CCGC	3 cut(s)	50, 446, 606
BspANI	GGCC	2 cut(s)	110, 342
BspFNI	CGCG	5 cut(s)	52, 86, 88, 90, 357
BspHI	TCATGA	1 cut(s)	391
BspPI	GGATC	1 cut(s)	106
BspT104I	TTCGAA	1 cut(s)	564
BspTNI	GGTCTC	1 cut(s)	357
BsrDI	GCAATG	1 cut(s)	578
BsrFI	RCCGGY	1 cut(s)	477
BsrI	ACTGG	1 cut(s)	472
BssAI	RCCGGY	1 cut(s)	477
BssECI	CCNNGG	2 cut(s)	150, 337
BssHII	GCGCGC	1 cut(s)	86
BssMI	GATC	5 cut(s)	81, 98, 245, 636, 660
BssT1I	CCWWGG	2 cut(s)	150, 337
BstAPI	GCANNNNNTGC	1 cut(s)	575
BstBI	TTCGAA	1 cut(s)	564
BstC8I	GCNNGC	4 cut(s)	88, 217, 238, 585
BstDSI	CCRYGG	1 cut(s)	150
BstF5I	GGATG	2 cut(s)	252, 265
BstFNI	CGCG	5 cut(s)	52, 86, 88, 90, 357
BstHHI	GCGC	4 cut(s)	54, 88, 90, 359
BstKTI	GATC	5 cut(s)	84, 101, 248, 639, 663
BstMAI	GTCTC	1 cut(s)	357
BstMBI	GATC	5 cut(s)	81, 98, 245, 636, 660
BstMWI	GCNNNNNNNGC	4 cut(s)	404, 575, 584, 589
BstUI	CGCG	5 cut(s)	52, 86, 88, 90, 357
BstV1I	GCAGC	2 cut(s)	13, 174
BstX2I	RGATCY	1 cut(s)	98
BstYI	RGATCY	1 cut(s)	98
BsuI	GTATCC	1 cut(s)	172
BsuRI	GGCC	2 cut(s)	110, 342
BtgI	CCRYGG	1 cut(s)	150
BtgZI	GCGATG	1 cut(s)	573
BtsCI	GGATG	2 cut(s)	252, 265
BtsI	GCAGTG	1 cut(s)	490
BtsIMutI	CAGTG	2 cut(s)	479, 490
Cac8I	GCNNGC	4 cut(s)	88, 217, 238, 585
CciI	TCATGA	1 cut(s)	391
CfoI	GCGC	4 cut(s)	54, 88, 90, 359
Cfr10I	RCCGGY	1 cut(s)	477
Cfr13I	GGNCC	1 cut(s)	109
CseI	GACGC	1 cut(s)	404
Csp6I	GTAC	1 cut(s)	285
CspCI	CAANNNNNGTGG	2 cut(s)	55, 90
CviAII	CATG	2 cut(s)	151, 392
CviQI	GTAC	1 cut(s)	285
DpnI	GATC	5 cut(s)	83, 100, 247, 638, 662
DpnII	GATC	5 cut(s)	81, 98, 245, 636, 660
DraIII	CACNNNGTG	1 cut(s)	118
EaeI	YGGCCR	1 cut(s)	340
Eco130I	CCWWGG	2 cut(s)	150, 337
Eco31I	GGTCTC	1 cut(s)	357
Eco32I	GATATC	2 cut(s)	415, 558
Eco57I	CTGAAG	2 cut(s)	332, 720
EcoRV	GATATC	2 cut(s)	415, 558
EcoT14I	CCWWGG	2 cut(s)	150, 337
EcoT22I	ATGCAT	1 cut(s)	580
ErhI	CCWWGG	2 cut(s)	150, 337
FaeI	CATG	2 cut(s)	154, 395
FaiI	YATR	8 cut(s)	152, 189, 194, 222, 366, 393, 401, 531
FaqI	GGGAC	1 cut(s)	698
FatI	CATG	2 cut(s)	150, 391
FauI	CCCGC	2 cut(s)	439, 599
FbaI	TGATCA	1 cut(s)	636
Fnu4HI	GCNGC	2 cut(s)	27, 163
FokI	GGATG	2 cut(s)	239, 252
Fsp4HI	GCNGC	2 cut(s)	27, 163
FspBI	CTAG	2 cut(s)	387, 422
GlaI	GCGC	4 cut(s)	53, 87, 89, 358
GluI	GCNGC	2 cut(s)	27, 163
HaeIII	GGCC	2 cut(s)	110, 342
HapII	CCGG	1 cut(s)	478
HgaI	GACGC	1 cut(s)	404
HhaI	GCGC	4 cut(s)	54, 88, 90, 359
Hin1II	CATG	2 cut(s)	154, 395
Hin6I	GCGC	4 cut(s)	52, 86, 88, 357
HinP1I	GCGC	4 cut(s)	52, 86, 88, 357
HinfI	GANTC	5 cut(s)	41, 306, 376, 383, 503
HpaII	CCGG	1 cut(s)	478
HphI	GGTGA	1 cut(s)	214
Hpy188I	TCNGA	3 cut(s)	630, 646, 700
Hpy188III	TCNNGA	6 cut(s)	176, 269, 297, 310, 380, 392
HpyAV	CCTTC	1 cut(s)	307
HpyCH4V	TGCA	5 cut(s)	215, 280, 319, 483, 578
HpyF10VI	GCNNNNNNNGC	4 cut(s)	404, 575, 584, 589
Hsp92II	CATG	2 cut(s)	154, 395
HspAI	GCGC	4 cut(s)	52, 86, 88, 357
Ksp22I	TGATCA	1 cut(s)	636
Kzo9I	GATC	5 cut(s)	81, 98, 245, 636, 660
LpnPI	CCDG	7 cut(s)	161, 276, 282, 323, 485, 491, 597
Lsp1109I	GCAGC	2 cut(s)	13, 174
LweI	GCATC	3 cut(s)	202, 433, 596
MaeI	CTAG	2 cut(s)	387, 422
MaeIII	GTNAC	1 cut(s)	485
MalI	GATC	5 cut(s)	83, 100, 247, 638, 662
MauBI	CGCGCGCG	1 cut(s)	86
MboI	GATC	5 cut(s)	81, 98, 245, 636, 660
MboII	GAAGA	7 cut(s)	133, 422, 437, 452, 487, 532, 713
MflI	RGATCY	1 cut(s)	98
MlsI	TGGCCA	1 cut(s)	342
MluCI	AATT	4 cut(s)	14, 19, 275, 640
MluNI	TGGCCA	1 cut(s)	342
MmeI	TCCRAC	1 cut(s)	495
MnlI	CCTC	3 cut(s)	40, 445, 608
Mox20I	TGGCCA	1 cut(s)	342
Mph1103I	ATGCAT	1 cut(s)	580
MroXI	GAANNNNTTC	1 cut(s)	228
MscI	TGGCCA	1 cut(s)	342
MseI	TTAA	3 cut(s)	18, 539, 722
Msp20I	TGGCCA	1 cut(s)	342
MspI	CCGG	1 cut(s)	478
Mva1269I	GAATGC	1 cut(s)	580
MvnI	CGCG	5 cut(s)	52, 86, 88, 90, 357
MwoI	GCNNNNNNNGC	4 cut(s)	404, 575, 584, 589
NcoI	CCATGG	1 cut(s)	150
NdeII	GATC	5 cut(s)	81, 98, 245, 636, 660
NlaIII	CATG	2 cut(s)	154, 395
NmeAIII	GCCGAG	1 cut(s)	86
NmuCI	GTSAC	1 cut(s)	485
NsiI	ATGCAT	1 cut(s)	580
NspV	TTCGAA	1 cut(s)	564
PagI	TCATGA	1 cut(s)	391
PauI	GCGCGC	1 cut(s)	86
PctI	GAATGC	1 cut(s)	580
PdmI	GAANNNNTTC	1 cut(s)	228
PfeI	GAWTC	5 cut(s)	41, 306, 376, 383, 503
PflMI	CCANNNNNTGG	1 cut(s)	679
PkrI	GCNGC	2 cut(s)	28, 164
PspPI	GGNCC	1 cut(s)	109
PsuI	RGATCY	1 cut(s)	98
PteI	GCGCGC	1 cut(s)	86
RsaI	GTAC	1 cut(s)	286
RsaNI	GTAC	1 cut(s)	285
SaqAI	TTAA	3 cut(s)	18, 539, 722
SatI	GCNGC	2 cut(s)	27, 163
Sau3AI	GATC	5 cut(s)	81, 98, 245, 636, 660
Sau96I	GGNCC	1 cut(s)	109
SetI	ASST	7 cut(s)	145, 221, 242, 318, 353, 456, 722
SfaNI	GCATC	3 cut(s)	202, 433, 596
SfuI	TTCGAA	1 cut(s)	564
Sse9I	AATT	4 cut(s)	14, 19, 275, 640
SsiI	CCGC	3 cut(s)	50, 446, 606
SspMI	CTAG	2 cut(s)	387, 422
StyI	CCWWGG	2 cut(s)	150, 337
TaqI	TCGA	4 cut(s)	232, 381, 564, 676
TasI	AATT	4 cut(s)	14, 19, 275, 640
TatI	WGTACW	1 cut(s)	284
TfiI	GAWTC	5 cut(s)	41, 306, 376, 383, 503
Tru1I	TTAA	3 cut(s)	18, 539, 722
Tru9I	TTAA	3 cut(s)	18, 539, 722
TscAI	CASTG	2 cut(s)	479, 490
TseFI	GTSAC	1 cut(s)	485
TseI	GCWGC	2 cut(s)	26, 162
Tsp45I	GTSAC	1 cut(s)	485
TspDTI	ATGAA	1 cut(s)	237
TspRI	CASTG	2 cut(s)	479, 490
Van91I	CCANNNNNTGG	1 cut(s)	679
XapI	RAATTY	1 cut(s)	14
XmnI	GAANNNNTTC	1 cut(s)	228
XspI	CTAG	2 cut(s)	387, 422
Zsp2I	ATGCAT	1 cut(s)	580

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.