Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0001728

Physical Location & Seq

Genomic Coordinates Forward (+)

45896928 .. 45898335

Gene Structure 1408 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000003231

Sequence Viewer

CDS Protein Promoter (2k)

Length: 672 bp

ATGGTGCTTGGCAATAGCTTCATTCGCGAAACTCACTATGACATACTATCTGTGAAGGAAGATGCAAGCTACGAAGATATCCGAACAAGCTACAGATCTGCCATCCTTAATAGTCATCCTGATAAACTACAAGCTACATCTGAGTCAGGAGATAGATTCTTGAAGGTGCAAAAGGCTTGGGAAATCCTCAGCGATTCGAGGTCTCGTGCACTTTATGACAATATGCTAATGGCTTCTAGACATGACACTTTTGTAGCCGATGATATCAGCTTAGAAGACGTGATGGCTGAAGATGCAGGAGACGTCATTCAACTCTTTTACCAGTGTCGATGTGGTGATTATTACTTTGTTGATTCTTTGGAGTTGGAGAAGATGGGGACAGCATACTGTTACTTCTATTATGTTAGAAAAAACAGTCCCATTAGTCCTCCACCTCCTACAGTCAGTAGTGAGATTGTGATCAGAGAGACTGTTCAAGTTGTCCATGATGAGTCTGATCCAGTGAAGAATGGAGCCAACAAAGAACGAGAAGAAGAGATTGCAAATGCAAAGAAGGAAGTTGAAGAGCAGCTAAGATTGCACAGATCATGGATATCAAATAAGAAGCATGAAGGGTGTGAAGGAAGAGGAGTCATGTGTATGACTTGCCATCCAAGTTTAACAAGGACTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006417 GO:0006448 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0010608 GO:0017182 GO:0017183 GO:0018193 GO:0018202 GO:0019222 GO:0019538 GO:0031323 GO:0031326 GO:0032268 GO:0034248 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0050789 GO:0050794 GO:0051171 GO:0051246 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:1900247 GO:1901564 GO:2000112 GO:2000765

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DnaJ zf-CSL

Protein Analysis

224

Amino Acids

25.58

Weight (kDa)

5.14

Isoelectric Point (pI)

57.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DnaJ	PF00226	11 - 73	2.4e-18	DnaJ domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001728)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G10130 AT4G10130 AT4G10130 AT4G10130 AT4G10130
fragaria_vesca	FvH4_2g34630
malus_domestica	MD08G1103500.v1.1 MD08G1103600.v1.1 MD15G1084800.v1.1 MD15G1084900.v1.1
prunus_persica	Prupe.1G438600_v2.0.a1 Prupe.1G438700_v2.0.a1
pyrus_communis	pycom08g08490 pycom08g08500 pycom15g08020
rosa_chinensis	RchiOBHm_Chr5g0002021 RchiOBHm_Chr6g0307441 RchiOBHm_Chr6g0307451 RchiOBHm_Chr7g0208301
rosa_laevigata	RLG00000003231 RLG00000010712 RLG00000010713
rosa_multiflora	Rmu_sc0000031.1_g000018 Rmu_sc0000841.1_g000020 Rmu_sc0007869.1_g000024
rosa_roxburghii	Rroxscaffold_3G00250600 Rroxscaffold_7G00160990
rosa_rugosa	Rorug01G0242800 Rorug04G0397800 Rorug06G0145700 Rorug06G0358700 Rorug06G0358700 Rorug07G0102800 Rorug07G0102800 Rorug07G0102900.1
rosa_samantha	Rh1BG163200 Rh1DG193900 Rh6BG430400 Rh6CG484400 Rh6CG484500 Rh6DG471100 Rh6DG471200 Rh7AG237200 Rh7BG232700 Rh7CG253100 Rh7DG243200
rosa_wichuraiana	Rw6G040910 Rw7G020240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	306
AccII	CGCG	1 cut(s)	27
AclWI	GGATC	1 cut(s)	491
AcuI	CTGAAG	1 cut(s)	309
AcyI	GRCGYC	1 cut(s)	303
AgsI	TTSAA	4 cut(s)	163, 311, 476, 563
AjiI	CACGTC	1 cut(s)	280
AluBI	AGCT	6 cut(s)	18, 69, 90, 134, 270, 571
AluI	AGCT	6 cut(s)	18, 69, 90, 134, 270, 571
Alw21I	GWGCWC	1 cut(s)	211
Alw26I	GTCTC	3 cut(s)	207, 294, 461
Alw44I	GTGCAC	1 cut(s)	207
AlwI	GGATC	1 cut(s)	491
ApaLI	GTGCAC	1 cut(s)	207
ApeKI	GCWGC	1 cut(s)	568
AsuHPI	GGTGA	1 cut(s)	347
BaeGI	GKGCMC	1 cut(s)	211
BauI	CACGAG	1 cut(s)	204
BbsI	GAAGAC	1 cut(s)	282
Bbv12I	GWGCWC	1 cut(s)	211
BbvCI	CCTCAGC	1 cut(s)	188
BbvI	GCAGC	1 cut(s)	580
BccI	CCATC	4 cut(s)	110, 277, 367, 657
BclI	TGATCA	1 cut(s)	459
BcoDI	GTCTC	3 cut(s)	207, 294, 461
BfaI	CTAG	1 cut(s)	237
BfmI	CTRYAG	2 cut(s)	91, 438
BglII	AGATCT	1 cut(s)	95
BisI	GCNGC	1 cut(s)	569
BlsI	GCNGC	1 cut(s)	570
BmgBI	CACGTC	1 cut(s)	280
BmiI	GGNNCC	1 cut(s)	514
BmsI	GCATC	2 cut(s)	52, 283
BpiI	GAAGAC	1 cut(s)	282
Bpu10I	CCTNAGC	1 cut(s)	188
BsaBI	GATNNNNATC	1 cut(s)	458
BsaHI	GRCGYC	1 cut(s)	303
BsaI	GGTCTC	1 cut(s)	207
Bse1I	ACTGG	2 cut(s)	322, 500
Bse8I	GATNNNNATC	1 cut(s)	458
BseGI	GGATG	3 cut(s)	102, 115, 649
BseJI	GATNNNNATC	1 cut(s)	458
BseMII	CTCAG	2 cut(s)	132, 202
BseNI	ACTGG	2 cut(s)	322, 500
BseRI	GAGGAG	1 cut(s)	642
BseSI	GKGCMC	1 cut(s)	211
BseXI	GCAGC	1 cut(s)	580
Bsh1236I	CGCG	1 cut(s)	27
BsiHKAI	GWGCWC	1 cut(s)	211
BslFI	GGGAC	2 cut(s)	391, 402
BsmAI	GTCTC	3 cut(s)	207, 294, 461
BsmBI	CGTCTC	1 cut(s)	294
BsmFI	GGGAC	2 cut(s)	391, 402
Bso31I	GGTCTC	1 cut(s)	207
Bsp1286I	GDGCHC	1 cut(s)	211
Bsp143I	GATC	4 cut(s)	95, 459, 496, 584
Bsp68I	TCGCGA	1 cut(s)	27
BspCNI	CTCAG	2 cut(s)	133, 201
BspFNI	CGCG	1 cut(s)	27
BspLI	GGNNCC	1 cut(s)	514
BspPI	GGATC	1 cut(s)	491
BspQI	GCTCTTC	1 cut(s)	558
BspTNI	GGTCTC	1 cut(s)	207
BsrI	ACTGG	2 cut(s)	322, 500
BssMI	GATC	4 cut(s)	95, 459, 496, 584
BssNI	GRCGYC	1 cut(s)	303
BssSI	CACGAG	1 cut(s)	204
Bst2BI	CACGAG	1 cut(s)	204
Bst4CI	ACNGT	4 cut(s)	389, 416, 442, 472
Bst6I	CTCTTC	3 cut(s)	528, 558, 619
BstACI	GRCGYC	1 cut(s)	303
BstC8I	GCNNGC	1 cut(s)	67
BstDEI	CTNAG	5 cut(s)	141, 188, 271, 572, 669
BstF5I	GGATG	3 cut(s)	102, 115, 649
BstFNI	CGCG	1 cut(s)	27
BstKTI	GATC	4 cut(s)	98, 462, 499, 587
BstMAI	GTCTC	3 cut(s)	207, 294, 461
BstMBI	GATC	4 cut(s)	95, 459, 496, 584
BstMWI	GCNNNNNNNGC	3 cut(s)	24, 293, 577
BstSFI	CTRYAG	2 cut(s)	91, 438
BstSLI	GKGCMC	1 cut(s)	211
BstUI	CGCG	1 cut(s)	27
BstV1I	GCAGC	1 cut(s)	580
BstV2I	GAAGAC	1 cut(s)	282
BstX2I	RGATCY	1 cut(s)	95
BstYI	RGATCY	1 cut(s)	95
BtrI	CACGTC	1 cut(s)	280
BtsCI	GGATG	3 cut(s)	102, 115, 649
BtsIMutI	CAGTG	2 cut(s)	329, 507
BtuMI	TCGCGA	1 cut(s)	27
Cac8I	GCNNGC	1 cut(s)	67
CviAII	CATG	5 cut(s)	242, 485, 588, 608, 634
DdeI	CTNAG	5 cut(s)	141, 188, 271, 572, 669
DpnI	GATC	4 cut(s)	97, 461, 498, 586
DpnII	GATC	4 cut(s)	95, 459, 496, 584
Eam1104I	CTCTTC	3 cut(s)	528, 558, 619
EarI	CTCTTC	3 cut(s)	528, 558, 619
Eco31I	GGTCTC	1 cut(s)	207
Eco32I	GATATC	3 cut(s)	79, 265, 594
Eco57I	CTGAAG	1 cut(s)	309
EcoRV	GATATC	3 cut(s)	79, 265, 594
Esp3I	CGTCTC	1 cut(s)	294
FaeI	CATG	5 cut(s)	245, 488, 591, 611, 637
FaqI	GGGAC	2 cut(s)	391, 402
FatI	CATG	5 cut(s)	241, 484, 587, 607, 633
FbaI	TGATCA	1 cut(s)	459
Fnu4HI	GCNGC	1 cut(s)	569
FokI	GGATG	3 cut(s)	89, 102, 636
Fsp4HI	GCNGC	1 cut(s)	569
FspBI	CTAG	1 cut(s)	237
GluI	GCNGC	1 cut(s)	569
Hin1I	GRCGYC	1 cut(s)	303
Hin1II	CATG	5 cut(s)	245, 488, 591, 611, 637
HinfI	GANTC	6 cut(s)	143, 156, 194, 353, 491, 630
HphI	GGTGA	1 cut(s)	347
Hpy166II	GTNNAC	1 cut(s)	209
Hpy188I	TCNGA	4 cut(s)	83, 142, 464, 496
Hpy188III	TCNNGA	5 cut(s)	26, 119, 147, 160, 237
Hpy8I	GTNNAC	1 cut(s)	209
HpyAV	CCTTC	5 cut(s)	49, 157, 547, 605, 614
HpyCH4III	ACNGT	4 cut(s)	389, 416, 442, 472
HpyCH4IV	ACGT	2 cut(s)	279, 303
HpyCH4V	TGCA	7 cut(s)	65, 169, 209, 296, 542, 548, 580
HpyF10VI	GCNNNNNNNGC	3 cut(s)	24, 293, 577
HpyF3I	CTNAG	5 cut(s)	141, 188, 271, 572, 669
HpySE526I	ACGT	2 cut(s)	279, 303
Hsp92I	GRCGYC	1 cut(s)	303
Hsp92II	CATG	5 cut(s)	245, 488, 591, 611, 637
Ksp22I	TGATCA	1 cut(s)	459
Kzo9I	GATC	4 cut(s)	95, 459, 496, 584
LguI	GCTCTTC	1 cut(s)	558
LmnI	GCTCC	1 cut(s)	512
LpnPI	CCDG	5 cut(s)	132, 132, 282, 335, 513
Lsp1109I	GCAGC	1 cut(s)	580
LweI	GCATC	2 cut(s)	52, 283
MaeI	CTAG	1 cut(s)	237
MaeII	ACGT	2 cut(s)	279, 303
MaeIII	GTNAC	1 cut(s)	389
MalI	GATC	4 cut(s)	97, 461, 498, 586
MboI	GATC	4 cut(s)	95, 459, 496, 584
MflI	RGATCY	1 cut(s)	95
MhlI	GDGCHC	1 cut(s)	211
MlyI	GAGTC	3 cut(s)	152, 500, 639
MmeI	TCCRAC	1 cut(s)	345
MnlI	CCTC	5 cut(s)	192, 197, 438, 444, 620
MseI	TTAA	2 cut(s)	108, 659
MslI	CAYNNNNRTG	1 cut(s)	638
MvnI	CGCG	1 cut(s)	27
MwoI	GCNNNNNNNGC	3 cut(s)	24, 293, 577
NdeII	GATC	4 cut(s)	95, 459, 496, 584
NlaIII	CATG	5 cut(s)	245, 488, 591, 611, 637
NlaIV	GGNNCC	1 cut(s)	514
NruI	TCGCGA	1 cut(s)	27
PciSI	GCTCTTC	1 cut(s)	558
PfeI	GAWTC	3 cut(s)	156, 194, 353
PkrI	GCNGC	1 cut(s)	570
PleI	GAGTC	3 cut(s)	151, 499, 638
PpsI	GAGTC	3 cut(s)	151, 499, 638
PspN4I	GGNNCC	1 cut(s)	514
PsuI	RGATCY	1 cut(s)	95
RruI	TCGCGA	1 cut(s)	27
RseI	CAYNNNNRTG	1 cut(s)	638
SapI	GCTCTTC	1 cut(s)	558
SaqAI	TTAA	2 cut(s)	108, 659
SatI	GCNGC	1 cut(s)	569
Sau3AI	GATC	4 cut(s)	95, 459, 496, 584
SchI	GAGTC	3 cut(s)	152, 500, 639
SduI	GDGCHC	1 cut(s)	211
SfaNI	GCATC	2 cut(s)	52, 283
SfcI	CTRYAG	2 cut(s)	91, 438
SmiMI	CAYNNNNRTG	1 cut(s)	638
SspMI	CTAG	1 cut(s)	237
TaaI	ACNGT	4 cut(s)	389, 416, 442, 472
TaiI	ACGT	2 cut(s)	282, 306
TaqI	TCGA	2 cut(s)	197, 328
TfiI	GAWTC	3 cut(s)	156, 194, 353
Tru1I	TTAA	2 cut(s)	108, 659
Tru9I	TTAA	2 cut(s)	108, 659
TscAI	CASTG	2 cut(s)	329, 507
TseI	GCWGC	1 cut(s)	568
TspDTI	ATGAA	2 cut(s)	10, 624
TspRI	CASTG	2 cut(s)	329, 507
VneI	GTGCAC	1 cut(s)	207
XbaI	TCTAGA	1 cut(s)	236
XcmI	CCANNNNNNNNNTGG	1 cut(s)	329
XspI	CTAG	1 cut(s)	237
ZraI	GACGTC	1 cut(s)	304

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.