Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001728

Physical Location & Seq

Genomic Coordinates Reverse (-)

65830340 .. 65831332

Gene Structure 993 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ27640

Sequence Viewer

CDS Protein Promoter (2k)

Length: 405 bp

ATGGGTTCTTCCCAGAAAAGCTCCCAATGGAGGAGCGTCTTCGATGGCGTGAAACTCAAGACCATCCCATCAGTGCCAGAAGCTCTAATGGCCGAGATCAACACTGCAATTTGCAATCTTGAATACGCACGCGCCTCTGTTCTTCTCGAATCTACGTCCCCTTCTTCTTCCTCTTCTTCAATCTCCAAGAATGAGAGCTCTGCTCAACCTCAGTTTGATGCCCGGAAAGCGGATCAGGCTTACAAGGCAGGCTGTGCTGCCTTGGCTGCTGGGAAGCTCGATGAGGCTCTTCTGTCATTGAATGTTTCGCTTTCGAAATGCCCACCTGATCAGACCTCTGCCGTTGCGAAGCTTCATTCGCTTATCTCTCTCACATCTCAGCAGCTGTACAAACCCACCAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

134

Amino Acids

14.15

Weight (kDa)

8.46

Isoelectric Point (pI)

46.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001728)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G10130 AT4G10130 AT4G10130 AT4G10130 AT4G10130
fragaria_vesca	FvH4_2g34630
malus_domestica	MD08G1103500.v1.1 MD08G1103600.v1.1 MD15G1084800.v1.1 MD15G1084900.v1.1
prunus_persica	Prupe.1G438600_v2.0.a1 Prupe.1G438700_v2.0.a1
pyrus_communis	pycom08g08490 pycom08g08500 pycom15g08020
rosa_chinensis	RchiOBHm_Chr5g0002021 RchiOBHm_Chr6g0307441 RchiOBHm_Chr6g0307451 RchiOBHm_Chr7g0208301
rosa_laevigata	RLG00000003231 RLG00000010712 RLG00000010713
rosa_multiflora	Rmu_sc0000031.1_g000018 Rmu_sc0000841.1_g000020 Rmu_sc0007869.1_g000024
rosa_roxburghii	Rroxscaffold_3G00250600 Rroxscaffold_7G00160990
rosa_rugosa	Rorug01G0242800 Rorug04G0397800 Rorug06G0145700 Rorug06G0358700 Rorug06G0358700 Rorug07G0102800 Rorug07G0102800 Rorug07G0102900.1
rosa_samantha	Rh1BG163200 Rh1DG193900 Rh6BG430400 Rh6CG484400 Rh6CG484500 Rh6DG471100 Rh6DG471200 Rh7AG237200 Rh7BG232700 Rh7CG253100 Rh7DG243200
rosa_wichuraiana	Rw6G040910 Rw7G020240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	132
AciI	CCGC	1 cut(s)	230
AclWI	GGATC	1 cut(s)	240
AcoI	YGGCCR	1 cut(s)	90
AfaI	GTAC	1 cut(s)	389
AfiI	CCNNNNNNNGG	2 cut(s)	30, 229
AgsI	TTSAA	3 cut(s)	122, 180, 301
AluBI	AGCT	6 cut(s)	21, 83, 198, 277, 352, 385
AluI	AGCT	6 cut(s)	21, 83, 198, 277, 352, 385
Alw21I	GWGCWC	1 cut(s)	200
AlwI	GGATC	1 cut(s)	240
AlwNI	CAGNNNCTG	1 cut(s)	385
AoxI	GGCC	1 cut(s)	90
ApeKI	GCWGC	3 cut(s)	257, 266, 382
AspLEI	GCGC	1 cut(s)	134
AsuC2I	CCSGG	1 cut(s)	223
AsuII	TTCGAA	1 cut(s)	314
BanII	GRGCYC	1 cut(s)	200
BbsI	GAAGAC	1 cut(s)	31
Bbv12I	GWGCWC	1 cut(s)	200
BbvI	GCAGC	3 cut(s)	244, 253, 394
BccI	CCATC	3 cut(s)	38, 71, 76
BceAI	ACGGC	1 cut(s)	326
BclI	TGATCA	1 cut(s)	328
BcnI	CCSGG	1 cut(s)	223
BisI	GCNGC	3 cut(s)	258, 267, 383
BlsI	GCNGC	3 cut(s)	259, 268, 384
Bme1390I	CCNGG	1 cut(s)	223
BmrFI	CCNGG	1 cut(s)	223
BmsI	GCATC	1 cut(s)	208
BpiI	GAAGAC	1 cut(s)	31
BplI	GAGNNNNNCTC	2 cut(s)	187, 219
Bpu14I	TTCGAA	1 cut(s)	314
BpuEI	CTTGAG	1 cut(s)	41
BpuMI	CCSGG	1 cut(s)	223
BsaJI	CCNNGG	1 cut(s)	261
Bsc4I	CCNNNNNNNGG	2 cut(s)	30, 229
BseDI	CCNNGG	1 cut(s)	261
BseGI	GGATG	1 cut(s)	63
BseLI	CCNNNNNNNGG	2 cut(s)	30, 229
BseMII	CTCAG	2 cut(s)	224, 392
BseRI	GAGGAG	1 cut(s)	46
BseXI	GCAGC	3 cut(s)	244, 253, 394
BseYI	CCCAGC	1 cut(s)	269
Bsh1236I	CGCG	1 cut(s)	132
BshFI	GGCC	1 cut(s)	92
BsiHKAI	GWGCWC	1 cut(s)	200
BsiSI	CCGG	1 cut(s)	223
BslFI	GGGAC	1 cut(s)	142
BslI	CCNNNNNNNGG	2 cut(s)	30, 229
BsmFI	GGGAC	1 cut(s)	142
BsnI	GGCC	1 cut(s)	92
Bsp119I	TTCGAA	1 cut(s)	314
Bsp1286I	GDGCHC	1 cut(s)	200
Bsp1407I	TGTACA	1 cut(s)	387
Bsp143I	GATC	3 cut(s)	96, 232, 328
BspACI	CCGC	1 cut(s)	230
BspANI	GGCC	1 cut(s)	92
BspCNI	CTCAG	2 cut(s)	223, 391
BspFNI	CGCG	1 cut(s)	132
BspPI	GGATC	1 cut(s)	240
BspQI	GCTCTTC	1 cut(s)	294
BspT104I	TTCGAA	1 cut(s)	314
BsrGI	TGTACA	1 cut(s)	387
BssECI	CCNNGG	1 cut(s)	261
BssMI	GATC	3 cut(s)	96, 232, 328
BssT1I	CCWWGG	1 cut(s)	261
Bst6I	CTCTTC	2 cut(s)	178, 294
BstAPI	GCANNNNNTGC	1 cut(s)	254
BstAUI	TGTACA	1 cut(s)	387
BstBI	TTCGAA	1 cut(s)	314
BstC8I	GCNNGC	2 cut(s)	130, 250
BstDEI	CTNAG	2 cut(s)	210, 378
BstF5I	GGATG	1 cut(s)	63
BstFNI	CGCG	1 cut(s)	132
BstHHI	GCGC	1 cut(s)	134
BstKTI	GATC	3 cut(s)	99, 235, 331
BstMBI	GATC	3 cut(s)	96, 232, 328
BstMWI	GCNNNNNNNGC	8 cut(s)	89, 227, 236, 245, 254, 263, 266, 358
BstSCI	CCNGG	1 cut(s)	221
BstUI	CGCG	1 cut(s)	132
BstV1I	GCAGC	3 cut(s)	244, 253, 394
BstV2I	GAAGAC	1 cut(s)	31
BsuRI	GGCC	1 cut(s)	92
BtsCI	GGATG	1 cut(s)	63
BtsI	GCAGTG	1 cut(s)	102
BtsIMutI	CAGTG	2 cut(s)	78, 102
Cac8I	GCNNGC	2 cut(s)	130, 250
CaiI	CAGNNNCTG	1 cut(s)	385
CfoI	GCGC	1 cut(s)	134
CseI	GACGC	1 cut(s)	25
Csp6I	GTAC	1 cut(s)	388
CviQI	GTAC	1 cut(s)	388
DdeI	CTNAG	2 cut(s)	210, 378
DpnI	GATC	3 cut(s)	98, 234, 330
DpnII	GATC	3 cut(s)	96, 232, 328
EaeI	YGGCCR	1 cut(s)	90
Eam1104I	CTCTTC	2 cut(s)	178, 294
EarI	CTCTTC	2 cut(s)	178, 294
Ecl136II	GAGCTC	1 cut(s)	198
Eco130I	CCWWGG	1 cut(s)	261
Eco24I	GRGCYC	1 cut(s)	200
Eco53kI	GAGCTC	1 cut(s)	198
EcoICRI	GAGCTC	1 cut(s)	198
EcoT14I	CCWWGG	1 cut(s)	261
EcoT38I	GRGCYC	1 cut(s)	200
ErhI	CCWWGG	1 cut(s)	261
FaqI	GGGAC	1 cut(s)	142
FbaI	TGATCA	1 cut(s)	328
Fnu4HI	GCNGC	3 cut(s)	258, 267, 383
FokI	GGATG	1 cut(s)	50
FriOI	GRGCYC	1 cut(s)	200
Fsp4HI	GCNGC	3 cut(s)	258, 267, 383
GlaI	GCGC	1 cut(s)	133
GluI	GCNGC	3 cut(s)	258, 267, 383
GsaI	CCCAGC	1 cut(s)	273
HaeIII	GGCC	1 cut(s)	92
HapII	CCGG	1 cut(s)	223
HgaI	GACGC	1 cut(s)	25
HhaI	GCGC	1 cut(s)	134
Hin6I	GCGC	1 cut(s)	132
HinP1I	GCGC	1 cut(s)	132
HindIII	AAGCTT	1 cut(s)	350
HinfI	GANTC	1 cut(s)	149
HpaII	CCGG	1 cut(s)	223
Hpy188I	TCNGA	1 cut(s)	333
Hpy188III	TCNNGA	3 cut(s)	58, 119, 146
HpyAV	CCTTC	1 cut(s)	171
HpyCH4IV	ACGT	1 cut(s)	155
HpyCH4V	TGCA	2 cut(s)	107, 114
HpyF10VI	GCNNNNNNNGC	8 cut(s)	89, 227, 236, 245, 254, 263, 266, 358
HpyF3I	CTNAG	2 cut(s)	210, 378
HpySE526I	ACGT	1 cut(s)	155
HspAI	GCGC	1 cut(s)	132
Ksp22I	TGATCA	1 cut(s)	328
Kzo9I	GATC	3 cut(s)	96, 232, 328
LguI	GCTCTTC	1 cut(s)	294
LmnI	GCTCC	2 cut(s)	26, 33
LpnPI	CCDG	7 cut(s)	26, 90, 221, 234, 236, 255, 339
Lsp1109I	GCAGC	3 cut(s)	244, 253, 394
LweI	GCATC	1 cut(s)	208
MaeII	ACGT	1 cut(s)	155
MalI	GATC	3 cut(s)	98, 234, 330
MboI	GATC	3 cut(s)	96, 232, 328
MboII	GAAGA	7 cut(s)	31, 134, 156, 159, 165, 168, 281
MhlI	GDGCHC	1 cut(s)	200
MluCI	AATT	1 cut(s)	108
MnlI	CCTC	6 cut(s)	24, 145, 181, 219, 277, 346
MspA1I	CMGCKG	1 cut(s)	385
MspI	CCGG	1 cut(s)	223
MspR9I	CCNGG	1 cut(s)	223
MvnI	CGCG	1 cut(s)	132
MwoI	GCNNNNNNNGC	8 cut(s)	89, 227, 236, 245, 254, 263, 266, 358
NciI	CCSGG	1 cut(s)	223
NdeII	GATC	3 cut(s)	96, 232, 328
NmeAIII	GCCGAG	1 cut(s)	118
NspV	TTCGAA	1 cut(s)	314
PciSI	GCTCTTC	1 cut(s)	294
PfeI	GAWTC	1 cut(s)	149
PkrI	GCNGC	3 cut(s)	259, 268, 384
Psp124BI	GAGCTC	1 cut(s)	200
PspFI	CCCAGC	1 cut(s)	269
PstNI	CAGNNNCTG	1 cut(s)	385
PvuII	CAGCTG	1 cut(s)	385
RsaI	GTAC	1 cut(s)	389
RsaNI	GTAC	1 cut(s)	388
SacI	GAGCTC	1 cut(s)	200
SapI	GCTCTTC	1 cut(s)	294
SatI	GCNGC	3 cut(s)	258, 267, 383
Sau3AI	GATC	3 cut(s)	96, 232, 328
ScrFI	CCNGG	1 cut(s)	223
SduI	GDGCHC	1 cut(s)	200
SfaNI	GCATC	1 cut(s)	208
SfuI	TTCGAA	1 cut(s)	314
SmlI	CTYRAG	1 cut(s)	56
SmoI	CTYRAG	1 cut(s)	56
Sse9I	AATT	1 cut(s)	108
SsiI	CCGC	1 cut(s)	230
SstI	GAGCTC	1 cut(s)	200
StyD4I	CCNGG	1 cut(s)	221
StyI	CCWWGG	1 cut(s)	261
TaiI	ACGT	1 cut(s)	158
TaqI	TCGA	4 cut(s)	42, 147, 279, 314
TasI	AATT	1 cut(s)	108
TatI	WGTACW	1 cut(s)	387
TfiI	GAWTC	1 cut(s)	149
TscAI	CASTG	2 cut(s)	78, 109
TseI	GCWGC	3 cut(s)	257, 266, 382
TspDTI	ATGAA	1 cut(s)	344
TspRI	CASTG	2 cut(s)	78, 109

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.