Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0001728

Physical Location & Seq

Genomic Coordinates Forward (+)

37313461 .. 37313862

Gene Structure 402 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G438700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 393 bp

ATGGGTTCTGCAGAAAAAAGCTCCCAATGGAGGAGTGTCTTTGATGGTGTGAAACTGAAGACTATCAAAGCCATGCCGGAAGCACTCATGGCAGAGATCAACACAGCAATTTGCAATCTTGAATATGCACGTGACACTGATCTGGTCGACTCTCCATCTTCTTCTTCAATCTCAAGGTTTGAGAGCTCTCCTCAACCTGAATACAGTGCTCGCATGGCGGACCAAGCCTACAAGGCAGGGTGTGCAGCCTTGGCTGCTGGCAAGCTTGATGATGCTCTTCAATCTCTGAACGTTTCTCTCTCCAAATGCCCGCCTGATCAGACTTCTGCTGTGTCTAAGCTTCATTCTCTCATCTCTCTCACATCACAGCAGCTCCAAAACTCCACAAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

131

Amino Acids

13.88

Weight (kDa)

5.3

Isoelectric Point (pI)

56.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001728)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G10130 AT4G10130 AT4G10130 AT4G10130 AT4G10130
fragaria_vesca	FvH4_2g34630
malus_domestica	MD08G1103500.v1.1 MD08G1103600.v1.1 MD15G1084800.v1.1 MD15G1084900.v1.1
prunus_persica	Prupe.1G438600_v2.0.a1 Prupe.1G438700_v2.0.a1
pyrus_communis	pycom08g08490 pycom08g08500 pycom15g08020
rosa_chinensis	RchiOBHm_Chr5g0002021 RchiOBHm_Chr6g0307441 RchiOBHm_Chr6g0307451 RchiOBHm_Chr7g0208301
rosa_laevigata	RLG00000003231 RLG00000010712 RLG00000010713
rosa_multiflora	Rmu_sc0000031.1_g000018 Rmu_sc0000841.1_g000020 Rmu_sc0007869.1_g000024
rosa_roxburghii	Rroxscaffold_3G00250600 Rroxscaffold_7G00160990
rosa_rugosa	Rorug01G0242800 Rorug04G0397800 Rorug06G0145700 Rorug06G0358700 Rorug06G0358700 Rorug07G0102800 Rorug07G0102800 Rorug07G0102900.1
rosa_samantha	Rh1BG163200 Rh1DG193900 Rh6BG430400 Rh6CG484400 Rh6CG484500 Rh6DG471100 Rh6DG471200 Rh7AG237200 Rh7BG232700 Rh7CG253100 Rh7DG243200
rosa_wichuraiana	Rw6G040910 Rw7G020240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	147
AciI	CCGC	2 cut(s)	218, 311
AclI	AACGTT	1 cut(s)	291
AcuI	CTGAAG	1 cut(s)	77
AcvI	CACGTG	1 cut(s)	131
AfiI	CCNNNNNNNGG	1 cut(s)	30
AgsI	TTSAA	3 cut(s)	122, 168, 281
AluBI	AGCT	6 cut(s)	21, 186, 265, 340, 373, 390
AluI	AGCT	6 cut(s)	21, 186, 265, 340, 373, 390
Alw21I	GWGCWC	2 cut(s)	188, 211
ApeKI	GCWGC	3 cut(s)	245, 254, 370
AspS9I	GGNCC	1 cut(s)	220
AvaII	GGWCC	1 cut(s)	220
BanII	GRGCYC	1 cut(s)	188
BbrPI	CACGTG	1 cut(s)	131
BbsI	GAAGAC	1 cut(s)	65
Bbv12I	GWGCWC	2 cut(s)	188, 211
BbvI	GCAGC	3 cut(s)	241, 257, 382
BccI	CCATC	2 cut(s)	38, 163
BclI	TGATCA	1 cut(s)	316
BfmI	CTRYAG	1 cut(s)	9
BglI	GCCNNNNNGGC	1 cut(s)	233
BisI	GCNGC	3 cut(s)	246, 255, 371
BlsI	GCNGC	3 cut(s)	247, 256, 372
Bme18I	GGWCC	1 cut(s)	220
BmgT120I	GGNCC	1 cut(s)	220
BmsI	GCATC	1 cut(s)	262
BpiI	GAAGAC	1 cut(s)	65
BplI	GAGNNNNNCTC	2 cut(s)	175, 207
BpuEI	CTTGAG	1 cut(s)	157
BsaAI	YACGTR	1 cut(s)	131
BsaJI	CCNNGG	1 cut(s)	249
BsaXI	ACNNNNNCTCC	2 cut(s)	357, 387
Bsc4I	CCNNNNNNNGG	1 cut(s)	30
BseDI	CCNNGG	1 cut(s)	249
BseLI	CCNNNNNNNGG	1 cut(s)	30
BseRI	GAGGAG	2 cut(s)	46, 180
BseXI	GCAGC	3 cut(s)	241, 257, 382
BsgI	GTGCAG	1 cut(s)	264
BsiHKAI	GWGCWC	2 cut(s)	188, 211
BsiSI	CCGG	1 cut(s)	77
BslI	CCNNNNNNNGG	1 cut(s)	30
Bsp1286I	GDGCHC	2 cut(s)	188, 211
Bsp143I	GATC	3 cut(s)	96, 139, 316
BspACI	CCGC	2 cut(s)	218, 311
BspMAI	CTGCAG	1 cut(s)	13
BspQI	GCTCTTC	1 cut(s)	282
BssECI	CCNNGG	1 cut(s)	249
BssMI	GATC	3 cut(s)	96, 139, 316
BssT1I	CCWWGG	1 cut(s)	249
Bst4CI	ACNGT	1 cut(s)	206
Bst6I	CTCTTC	1 cut(s)	282
BstAPI	GCANNNNNTGC	1 cut(s)	242
BstBAI	YACGTR	1 cut(s)	131
BstC8I	GCNNGC	4 cut(s)	211, 259, 263, 311
BstDEI	CTNAG	1 cut(s)	336
BstKTI	GATC	3 cut(s)	99, 142, 319
BstMBI	GATC	3 cut(s)	96, 139, 316
BstMWI	GCNNNNNNNGC	7 cut(s)	89, 215, 224, 233, 242, 251, 254
BstSFI	CTRYAG	1 cut(s)	9
BstV1I	GCAGC	3 cut(s)	241, 257, 382
BstV2I	GAAGAC	1 cut(s)	65
BtsIMutI	CAGTG	2 cut(s)	135, 211
Cac8I	GCNNGC	4 cut(s)	211, 259, 263, 311
Cfr13I	GGNCC	1 cut(s)	220
CviAII	CATG	3 cut(s)	73, 88, 214
DdeI	CTNAG	1 cut(s)	336
DpnI	GATC	3 cut(s)	98, 141, 318
DpnII	GATC	3 cut(s)	96, 139, 316
Eam1104I	CTCTTC	1 cut(s)	282
EarI	CTCTTC	1 cut(s)	282
EciI	GGCGGA	1 cut(s)	233
Ecl136II	GAGCTC	1 cut(s)	186
Eco130I	CCWWGG	1 cut(s)	249
Eco24I	GRGCYC	1 cut(s)	188
Eco47I	GGWCC	1 cut(s)	220
Eco53kI	GAGCTC	1 cut(s)	186
Eco57I	CTGAAG	1 cut(s)	77
Eco72I	CACGTG	1 cut(s)	131
EcoICRI	GAGCTC	1 cut(s)	186
EcoT14I	CCWWGG	1 cut(s)	249
EcoT38I	GRGCYC	1 cut(s)	188
ErhI	CCWWGG	1 cut(s)	249
FaeI	CATG	3 cut(s)	76, 91, 217
FaiI	YATR	4 cut(s)	74, 89, 126, 215
FatI	CATG	3 cut(s)	72, 87, 213
FauI	CCCGC	1 cut(s)	318
FbaI	TGATCA	1 cut(s)	316
FblI	GTMKAC	1 cut(s)	147
Fnu4HI	GCNGC	3 cut(s)	246, 255, 371
FriOI	GRGCYC	1 cut(s)	188
Fsp4HI	GCNGC	3 cut(s)	246, 255, 371
GluI	GCNGC	3 cut(s)	246, 255, 371
HapII	CCGG	1 cut(s)	77
Hin1II	CATG	3 cut(s)	76, 91, 217
HincII	GTYRAC	1 cut(s)	148
HindII	GTYRAC	1 cut(s)	148
HindIII	AAGCTT	2 cut(s)	263, 338
HinfI	GANTC	1 cut(s)	149
HpaII	CCGG	1 cut(s)	77
Hpy166II	GTNNAC	1 cut(s)	148
Hpy188I	TCNGA	2 cut(s)	288, 321
Hpy188III	TCNNGA	1 cut(s)	119
Hpy8I	GTNNAC	1 cut(s)	148
HpyCH4III	ACNGT	1 cut(s)	206
HpyCH4IV	ACGT	2 cut(s)	130, 291
HpyCH4V	TGCA	4 cut(s)	11, 114, 128, 245
HpyF10VI	GCNNNNNNNGC	7 cut(s)	89, 215, 224, 233, 242, 251, 254
HpyF3I	CTNAG	1 cut(s)	336
HpySE526I	ACGT	2 cut(s)	130, 291
Hsp92II	CATG	3 cut(s)	76, 91, 217
Ksp22I	TGATCA	1 cut(s)	316
Kzo9I	GATC	3 cut(s)	96, 139, 316
LguI	GCTCTTC	1 cut(s)	282
LmnI	GCTCC	2 cut(s)	26, 378
LpnPI	CCDG	6 cut(s)	90, 128, 210, 222, 243, 327
Lsp1109I	GCAGC	3 cut(s)	241, 257, 382
LweI	GCATC	1 cut(s)	262
MaeII	ACGT	2 cut(s)	130, 291
MaeIII	GTNAC	1 cut(s)	131
MalI	GATC	3 cut(s)	98, 141, 318
MboI	GATC	3 cut(s)	96, 139, 316
MboII	GAAGA	5 cut(s)	70, 150, 153, 156, 269
MhlI	GDGCHC	2 cut(s)	188, 211
MluCI	AATT	1 cut(s)	108
MlyI	GAGTC	1 cut(s)	143
MnlI	CCTC	2 cut(s)	24, 201
MspI	CCGG	1 cut(s)	77
MwoI	GCNNNNNNNGC	7 cut(s)	89, 215, 224, 233, 242, 251, 254
NdeII	GATC	3 cut(s)	96, 139, 316
NlaIII	CATG	3 cut(s)	76, 91, 217
NmuCI	GTSAC	1 cut(s)	131
PciSI	GCTCTTC	1 cut(s)	282
PkrI	GCNGC	3 cut(s)	247, 256, 372
PleI	GAGTC	1 cut(s)	143
PmaCI	CACGTG	1 cut(s)	131
PmlI	CACGTG	1 cut(s)	131
PpsI	GAGTC	1 cut(s)	143
Ppu21I	YACGTR	1 cut(s)	131
Psp124BI	GAGCTC	1 cut(s)	188
Psp1406I	AACGTT	1 cut(s)	291
PspCI	CACGTG	1 cut(s)	131
PspPI	GGNCC	1 cut(s)	220
PstI	CTGCAG	1 cut(s)	13
SacI	GAGCTC	1 cut(s)	188
SalI	GTCGAC	1 cut(s)	146
SapI	GCTCTTC	1 cut(s)	282
SatI	GCNGC	3 cut(s)	246, 255, 371
Sau3AI	GATC	3 cut(s)	96, 139, 316
Sau96I	GGNCC	1 cut(s)	220
SchI	GAGTC	1 cut(s)	143
SduI	GDGCHC	2 cut(s)	188, 211
SfaNI	GCATC	1 cut(s)	262
SfcI	CTRYAG	1 cut(s)	9
SinI	GGWCC	1 cut(s)	220
SmlI	CTYRAG	1 cut(s)	172
SmoI	CTYRAG	1 cut(s)	172
Sse9I	AATT	1 cut(s)	108
SsiI	CCGC	2 cut(s)	218, 311
SstI	GAGCTC	1 cut(s)	188
StyI	CCWWGG	1 cut(s)	249
TaaI	ACNGT	1 cut(s)	206
TaiI	ACGT	2 cut(s)	133, 294
TaqI	TCGA	1 cut(s)	147
TasI	AATT	1 cut(s)	108
TscAI	CASTG	2 cut(s)	142, 211
TseFI	GTSAC	1 cut(s)	131
TseI	GCWGC	3 cut(s)	245, 254, 370
Tsp45I	GTSAC	1 cut(s)	131
TspDTI	ATGAA	1 cut(s)	332
TspRI	CASTG	2 cut(s)	142, 211
VpaK11BI	GGWCC	1 cut(s)	220
XmiI	GTMKAC	1 cut(s)	147

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.