Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0001728

Physical Location & Seq

Genomic Coordinates Forward (+)

5855466 .. 5857252

Gene Structure 1787 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1084800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 528 bp

ATGTTTCTTTGCAACAATTCCATTCAGGAAACTCACTATGAAATACTTTCCGTGAAACAAGATGCAAGCTATGAAGATATCCGAGCAAGCTATCGATCTGCCATCCTTGATAGTCATCCTGATAAATCACAAAGTACCTCTGGATCGGGAGATAGATTCCTGAAGGTGCAAAAGGCTTGGGAAATCCTTGGCGATTCAAGGTCTCGCGCACTTTATGATAGCGCACTGCGAGCTTCTAGTCTTGATGCTATGGTTGCAGAAGATATCAGCTTAAAAGATGTGATGGCTGAAGATGCGGGAGAGGCCATTCAGCTCTTTTACCAGTGCCGGTGTGGTGACTATTTCTTCGTTGATTCTTTGGAGTTGGAGAAGATGGGATATGCTTTGTTAAGAGATGGAAGGAAAATATCTTTCGAGGCACAAAACGCATTGCCAGCATCGCTTGTCATCCCCTGCGGGTCTTGTTCTTTGAAAGTTCGGATGTTGATCAATTCAGATGATTTTGTTACGATTGTTGATAACCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006417 GO:0006448 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0010608 GO:0017182 GO:0017183 GO:0018193 GO:0018202 GO:0019222 GO:0019538 GO:0031323 GO:0031326 GO:0032268 GO:0034248 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0050789 GO:0050794 GO:0051171 GO:0051246 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:1900247 GO:1901564 GO:2000112 GO:2000765

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DnaJ zf-CSL

Protein Analysis

176

Amino Acids

19.54

Weight (kDa)

4.75

Isoelectric Point (pI)

43.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DnaJ	PF00226	11 - 73	3.5e-18	DnaJ domain
Zn_ribbon_CSL	PF05207	89 - 161	2.8e-08	CSL zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0001728)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G10130 AT4G10130 AT4G10130 AT4G10130 AT4G10130
fragaria_vesca	FvH4_2g34630
malus_domestica	MD08G1103500.v1.1 MD08G1103600.v1.1 MD15G1084800.v1.1 MD15G1084900.v1.1
prunus_persica	Prupe.1G438600_v2.0.a1 Prupe.1G438700_v2.0.a1
pyrus_communis	pycom08g08490 pycom08g08500 pycom15g08020
rosa_chinensis	RchiOBHm_Chr5g0002021 RchiOBHm_Chr6g0307441 RchiOBHm_Chr6g0307451 RchiOBHm_Chr7g0208301
rosa_laevigata	RLG00000003231 RLG00000010712 RLG00000010713
rosa_multiflora	Rmu_sc0000031.1_g000018 Rmu_sc0000841.1_g000020 Rmu_sc0007869.1_g000024
rosa_roxburghii	Rroxscaffold_3G00250600 Rroxscaffold_7G00160990
rosa_rugosa	Rorug01G0242800 Rorug04G0397800 Rorug06G0145700 Rorug06G0358700 Rorug06G0358700 Rorug07G0102800 Rorug07G0102800 Rorug07G0102900.1
rosa_samantha	Rh1BG163200 Rh1DG193900 Rh6BG430400 Rh6CG484400 Rh6CG484500 Rh6DG471100 Rh6DG471200 Rh7AG237200 Rh7BG232700 Rh7CG253100 Rh7DG243200
rosa_wichuraiana	Rw6G040910 Rw7G020240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	207
AciI	CCGC	2 cut(s)	296, 456
AclWI	GGATC	1 cut(s)	151
AcuI	CTGAAG	2 cut(s)	182, 309
AfaI	GTAC	1 cut(s)	136
AgsI	TTSAA	2 cut(s)	198, 472
AluBI	AGCT	5 cut(s)	69, 90, 233, 270, 313
AluI	AGCT	5 cut(s)	69, 90, 233, 270, 313
Alw26I	GTCTC	1 cut(s)	207
AlwI	GGATC	1 cut(s)	151
AoxI	GGCC	1 cut(s)	303
ArsI	GACNNNNNNTTYG	2 cut(s)	329, 361
AspLEI	GCGC	2 cut(s)	209, 224
AsuHPI	GGTGA	1 cut(s)	347
BccI	CCATC	4 cut(s)	110, 277, 367, 389
BclI	TGATCA	1 cut(s)	486
BcoDI	GTCTC	1 cut(s)	207
BfaI	CTAG	1 cut(s)	237
BmsI	GCATC	4 cut(s)	52, 235, 283, 446
Bsa29I	ATCGAT	1 cut(s)	94
BsaBI	GATNNNNATC	2 cut(s)	114, 485
BsaI	GGTCTC	1 cut(s)	207
BsaJI	CCNNGG	1 cut(s)	187
Bse118I	RCCGGY	1 cut(s)	327
Bse1I	ACTGG	1 cut(s)	322
Bse3DI	GCAATG	1 cut(s)	428
Bse8I	GATNNNNATC	2 cut(s)	114, 485
BseCI	ATCGAT	1 cut(s)	94
BseDI	CCNNGG	1 cut(s)	187
BseGI	GGATG	4 cut(s)	102, 115, 447, 486
BseJI	GATNNNNATC	2 cut(s)	114, 485
BseMI	GCAATG	1 cut(s)	428
BseNI	ACTGG	1 cut(s)	322
Bsh1236I	CGCG	1 cut(s)	207
BshFI	GGCC	1 cut(s)	305
BshVI	ATCGAT	1 cut(s)	94
BsiSI	CCGG	1 cut(s)	328
BsmAI	GTCTC	1 cut(s)	207
BsnI	GGCC	1 cut(s)	305
Bso31I	GGTCTC	1 cut(s)	207
Bsp143I	GATC	3 cut(s)	95, 143, 486
BspACI	CCGC	2 cut(s)	296, 456
BspANI	GGCC	1 cut(s)	305
BspDI	ATCGAT	1 cut(s)	94
BspFNI	CGCG	1 cut(s)	207
BspPI	GGATC	1 cut(s)	151
BspTNI	GGTCTC	1 cut(s)	207
BsrDI	GCAATG	1 cut(s)	428
BsrFI	RCCGGY	1 cut(s)	327
BsrI	ACTGG	1 cut(s)	322
BssAI	RCCGGY	1 cut(s)	327
BssECI	CCNNGG	1 cut(s)	187
BssMI	GATC	3 cut(s)	95, 143, 486
BssT1I	CCWWGG	1 cut(s)	187
BstC8I	GCNNGC	4 cut(s)	67, 88, 231, 435
BstF5I	GGATG	4 cut(s)	102, 115, 447, 486
BstFNI	CGCG	1 cut(s)	207
BstHHI	GCGC	2 cut(s)	209, 224
BstKTI	GATC	3 cut(s)	98, 146, 489
BstMAI	GTCTC	1 cut(s)	207
BstMBI	GATC	3 cut(s)	95, 143, 486
BstMWI	GCNNNNNNNGC	7 cut(s)	230, 254, 293, 302, 425, 434, 439
BstUI	CGCG	1 cut(s)	207
Bsu15I	ATCGAT	1 cut(s)	94
BsuRI	GGCC	1 cut(s)	305
BsuTUI	ATCGAT	1 cut(s)	94
BtgZI	GCGATG	1 cut(s)	423
BtsCI	GGATG	4 cut(s)	102, 115, 447, 486
BtsI	GCAGTG	1 cut(s)	224
BtsIMutI	CAGTG	2 cut(s)	224, 329
Cac8I	GCNNGC	4 cut(s)	67, 88, 231, 435
CfoI	GCGC	2 cut(s)	209, 224
Cfr10I	RCCGGY	1 cut(s)	327
ClaI	ATCGAT	1 cut(s)	94
Csp6I	GTAC	1 cut(s)	135
CviJI	RGCY	8 cut(s)	69, 90, 176, 233, 270, 287, 305, 313
CviKI_1	RGCY	8 cut(s)	69, 90, 176, 233, 270, 287, 305, 313
CviQI	GTAC	1 cut(s)	135
DpnI	GATC	3 cut(s)	97, 145, 488
DpnII	GATC	3 cut(s)	95, 143, 486
Eco130I	CCWWGG	1 cut(s)	187
Eco31I	GGTCTC	1 cut(s)	207
Eco32I	GATATC	2 cut(s)	79, 265
Eco57I	CTGAAG	2 cut(s)	182, 309
EcoRV	GATATC	2 cut(s)	79, 265
EcoT14I	CCWWGG	1 cut(s)	187
ErhI	CCWWGG	1 cut(s)	187
FaiI	YATR	5 cut(s)	39, 72, 216, 251, 381
FauI	CCCGC	2 cut(s)	289, 449
FbaI	TGATCA	1 cut(s)	486
FokI	GGATG	4 cut(s)	89, 102, 434, 493
FspBI	CTAG	1 cut(s)	237
GlaI	GCGC	2 cut(s)	208, 223
HaeIII	GGCC	1 cut(s)	305
HapII	CCGG	1 cut(s)	328
HhaI	GCGC	2 cut(s)	209, 224
Hin6I	GCGC	2 cut(s)	207, 222
HinP1I	GCGC	2 cut(s)	207, 222
HinfI	GANTC	3 cut(s)	156, 194, 353
HpaII	CCGG	1 cut(s)	328
HphI	GGTGA	1 cut(s)	347
Hpy188I	TCNGA	3 cut(s)	83, 480, 496
Hpy188III	TCNNGA	6 cut(s)	26, 119, 141, 147, 160, 242
HpyAV	CCTTC	2 cut(s)	157, 393
HpyCH4V	TGCA	4 cut(s)	12, 65, 169, 257
HpyF10VI	GCNNNNNNNGC	7 cut(s)	230, 254, 293, 302, 425, 434, 439
HspAI	GCGC	2 cut(s)	207, 222
Ksp22I	TGATCA	1 cut(s)	486
Kzo9I	GATC	3 cut(s)	95, 143, 486
LpnPI	CCDG	8 cut(s)	11, 126, 132, 173, 335, 341, 447, 466
LweI	GCATC	4 cut(s)	52, 235, 283, 446
MaeI	CTAG	1 cut(s)	237
MaeIII	GTNAC	2 cut(s)	335, 505
MalI	GATC	3 cut(s)	97, 145, 488
MboI	GATC	3 cut(s)	95, 143, 486
MboII	GAAGA	5 cut(s)	86, 272, 302, 337, 382
MluCI	AATT	2 cut(s)	16, 490
MmeI	TCCRAC	1 cut(s)	345
MnlI	CCTC	3 cut(s)	148, 295, 409
MseI	TTAA	2 cut(s)	272, 389
MspI	CCGG	1 cut(s)	328
MvnI	CGCG	1 cut(s)	207
MwoI	GCNNNNNNNGC	7 cut(s)	230, 254, 293, 302, 425, 434, 439
NdeII	GATC	3 cut(s)	95, 143, 486
NmuCI	GTSAC	1 cut(s)	335
PfeI	GAWTC	3 cut(s)	156, 194, 353
RsaI	GTAC	1 cut(s)	136
RsaNI	GTAC	1 cut(s)	135
SaqAI	TTAA	2 cut(s)	272, 389
Sau3AI	GATC	3 cut(s)	95, 143, 486
SetI	ASST	8 cut(s)	71, 92, 140, 168, 203, 235, 272, 315
SfaNI	GCATC	4 cut(s)	52, 235, 283, 446
Sse9I	AATT	2 cut(s)	16, 490
SsiI	CCGC	2 cut(s)	296, 456
SspMI	CTAG	1 cut(s)	237
StyI	CCWWGG	1 cut(s)	187
TaqI	TCGA	2 cut(s)	94, 414
TasI	AATT	2 cut(s)	16, 490
TfiI	GAWTC	3 cut(s)	156, 194, 353
Tru1I	TTAA	2 cut(s)	272, 389
Tru9I	TTAA	2 cut(s)	272, 389
TscAI	CASTG	2 cut(s)	231, 329
TseFI	GTSAC	1 cut(s)	335
Tsp45I	GTSAC	1 cut(s)	335
TspDTI	ATGAA	2 cut(s)	54, 87
TspGWI	ACGGA	1 cut(s)	40
TspRI	CASTG	2 cut(s)	231, 329
XcmI	CCANNNNNNNNNTGG	1 cut(s)	329
XspI	CTAG	1 cut(s)	237

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.