Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0001728

Physical Location & Seq

Genomic Coordinates Forward (+)

3851074 .. 3855046

Gene Structure 3973 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00160990.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1002 bp

ATGTCATCACGAACGCAGGTTAATGGATTTGATCGATGCTCAGACTATTATGTCGATGCCTACCTAAATCTTAAGGAGGTCCAAGCTTCATGTAAAACCTACACATTGGTCAGCTTGCAGCAAGTAGAGCTCCCCACCATGGTGCTTGGCAATCAGTCCATTCGCGAAACTCACTATGGCATACTATCTGTGAAGGAAGATGCTAGCTATGAAGATATCCGAACAAGTTACAGATCTGCCATACTTAATAGTCATCCTGATAAATTACAAGCTACATCTGAGTCGGGAGATAGATTCTTGAAGGTGCAAAAGGCTTGGGAAATCCTCAGTGATTCGAGGTCTCGTGCACTATATGACAACATGCTAATAGCTTCTAGACATGACACTTTTGTAGCCGATGATATCAGCTTAGAAGACGTGATGGCTGAAGATGCAGGAGACGTCGTTCAGCTATTTTACCAGTGTCGATGTGGTGATTATTACTTTGTTGATTCTTCGGAGTTGGAGAAAATGGGGTATGCTTTGTTAAGAGATGGTAGCAAGCTATCTTTTGAGGCACAAAATGCTTTGCCAGCATCACTAGTCCTTCCTTGTGGATCCTGTTCTTTGAAAAAAAGCTCCCAATGGAGGAGCGTCTTCGACGGCGTGAAACTCAAGACCATCCCATCAGTGCCAGAAGTTCTAATGGCCGAGATCAACACTGCAATTTGCAATCTTGAATACGCACGCGCCTCTGTTCTTCTCGAATCTACGTCCCCTTCTTCTTCCTCTTCATCAATCTCGAAGAATGAGAGCTCTGCTCAACCTCAGTTTGATGCCCGGAAAGCGGATCAGGCTTACAAGGCAGGCTGTGCTGCCTTGGCTGCTGGGAAGCTCGATGAGGCTCTTCTGTCATTGAATGTTTCGCTTTCGAACTGCCCACCTGATCAGACCTCTGCCGTTGCGAAGCTTCATTCGCTTATCTCTCTCACATCTCAGCAGCTGCACAAACCCACCAGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006417 GO:0006448 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0010608 GO:0017182 GO:0017183 GO:0018193 GO:0018202 GO:0019222 GO:0019538 GO:0031323 GO:0031326 GO:0032268 GO:0034248 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0050789 GO:0050794 GO:0051171 GO:0051246 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:1900247 GO:1901564 GO:2000112 GO:2000765

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DnaJ zf-CSL

Protein Analysis

333

Amino Acids

36.53

Weight (kDa)

5.15

Isoelectric Point (pI)

47.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DnaJ	PF00226	57 - 119	1.6e-17	DnaJ domain
Zn_ribbon_CSL	PF05207	133 - 203	4.4e-07	CSL zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001728)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G10130 AT4G10130 AT4G10130 AT4G10130 AT4G10130
fragaria_vesca	FvH4_2g34630
malus_domestica	MD08G1103500.v1.1 MD08G1103600.v1.1 MD15G1084800.v1.1 MD15G1084900.v1.1
prunus_persica	Prupe.1G438600_v2.0.a1 Prupe.1G438700_v2.0.a1
pyrus_communis	pycom08g08490 pycom08g08500 pycom15g08020
rosa_chinensis	RchiOBHm_Chr5g0002021 RchiOBHm_Chr6g0307441 RchiOBHm_Chr6g0307451 RchiOBHm_Chr7g0208301
rosa_laevigata	RLG00000003231 RLG00000010712 RLG00000010713
rosa_multiflora	Rmu_sc0000031.1_g000018 Rmu_sc0000841.1_g000020 Rmu_sc0007869.1_g000024
rosa_roxburghii	Rroxscaffold_3G00250600 Rroxscaffold_7G00160990
rosa_rugosa	Rorug01G0242800 Rorug04G0397800 Rorug06G0145700 Rorug06G0358700 Rorug06G0358700 Rorug07G0102800 Rorug07G0102800 Rorug07G0102900.1
rosa_samantha	Rh1BG163200 Rh1DG193900 Rh6BG430400 Rh6CG484400 Rh6CG484500 Rh6DG471100 Rh6DG471200 Rh7AG237200 Rh7BG232700 Rh7CG253100 Rh7DG243200
rosa_wichuraiana	Rw6G040910 Rw7G020240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	50
AatII	GACGTC	1 cut(s)	444
Acc36I	ACCTGC	1 cut(s)	7
AccII	CGCG	2 cut(s)	165, 729
AciI	CCGC	1 cut(s)	827
AclWI	GGATC	3 cut(s)	591, 604, 837
AcoI	YGGCCR	1 cut(s)	687
AcuI	CTGAAG	1 cut(s)	447
AcyI	GRCGYC	1 cut(s)	441
AfiI	CCNNNNNNNGG	3 cut(s)	139, 627, 826
AflII	CTTAAG	1 cut(s)	71
AgsI	TTSAA	4 cut(s)	301, 610, 719, 898
AhlI	ACTAGT	1 cut(s)	580
AjiI	CACGTC	1 cut(s)	418
AleI	CACNNNNGTG	1 cut(s)	140
AloI	GAACNNNNNNTCC	2 cut(s)	429, 461
Alw21I	GWGCWC	3 cut(s)	132, 349, 797
Alw26I	GTCTC	2 cut(s)	345, 432
Alw44I	GTGCAC	1 cut(s)	345
AlwI	GGATC	3 cut(s)	591, 604, 837
AlwNI	CAGNNNCTG	1 cut(s)	982
AoxI	GGCC	1 cut(s)	687
ApaLI	GTGCAC	1 cut(s)	345
ApeKI	GCWGC	5 cut(s)	118, 854, 863, 979, 982
AspLEI	GCGC	1 cut(s)	731
AspS9I	GGNCC	1 cut(s)	79
AsuC2I	CCSGG	1 cut(s)	820
AsuHPI	GGTGA	1 cut(s)	485
AsuII	TTCGAA	1 cut(s)	911
AsuNHI	GCTAGC	1 cut(s)	203
AvaII	GGWCC	1 cut(s)	79
BaeGI	GKGCMC	1 cut(s)	349
BamHI	GGATCC	1 cut(s)	596
BanII	GRGCYC	2 cut(s)	132, 797
BauI	CACGAG	1 cut(s)	342
BbsI	GAAGAC	2 cut(s)	420, 628
Bbv12I	GWGCWC	3 cut(s)	132, 349, 797
BbvI	GCAGC	5 cut(s)	130, 841, 850, 969, 991
BccI	CCATC	4 cut(s)	415, 527, 668, 673
BceAI	ACGGC	2 cut(s)	658, 923
BclI	TGATCA	1 cut(s)	925
BcnI	CCSGG	1 cut(s)	820
BcoDI	GTCTC	2 cut(s)	345, 432
BcuI	ACTAGT	1 cut(s)	580
BfaI	CTAG	3 cut(s)	204, 375, 581
BfrI	CTTAAG	1 cut(s)	71
BfuAI	ACCTGC	1 cut(s)	7
BglII	AGATCT	1 cut(s)	233
BisI	GCNGC	5 cut(s)	119, 855, 864, 980, 983
BlsI	GCNGC	5 cut(s)	120, 856, 865, 981, 984
Bme1390I	CCNGG	1 cut(s)	820
Bme18I	GGWCC	1 cut(s)	79
BmgBI	CACGTC	1 cut(s)	418
BmgT120I	GGNCC	1 cut(s)	79
BmiI	GGNNCC	1 cut(s)	598
BmrFI	CCNGG	1 cut(s)	820
BmsI	GCATC	6 cut(s)	26, 46, 190, 421, 584, 805
BmtI	GCTAGC	1 cut(s)	207
BpiI	GAAGAC	2 cut(s)	420, 628
BplI	GAGNNNNNCTC	2 cut(s)	784, 816
Bpu14I	TTCGAA	1 cut(s)	911
BpuEI	CTTGAG	1 cut(s)	638
BpuMI	CCSGG	1 cut(s)	820
Bsa29I	ATCGAT	1 cut(s)	34
BsaHI	GRCGYC	1 cut(s)	441
BsaI	GGTCTC	1 cut(s)	345
BsaJI	CCNNGG	2 cut(s)	138, 858
BsaXI	ACNNNNNCTCC	2 cut(s)	429, 459
Bsc4I	CCNNNNNNNGG	3 cut(s)	139, 627, 826
Bse1I	ACTGG	1 cut(s)	460
BseCI	ATCGAT	1 cut(s)	34
BseDI	CCNNGG	2 cut(s)	138, 858
BseGI	GGATG	2 cut(s)	253, 660
BseLI	CCNNNNNNNGG	3 cut(s)	139, 627, 826
BseMII	CTCAG	5 cut(s)	54, 270, 340, 821, 989
BseNI	ACTGG	1 cut(s)	460
BseRI	GAGGAG	1 cut(s)	643
BseSI	GKGCMC	1 cut(s)	349
BseXI	GCAGC	5 cut(s)	130, 841, 850, 969, 991
BseYI	CCCAGC	1 cut(s)	866
BsgI	GTGCAG	1 cut(s)	968
Bsh1236I	CGCG	2 cut(s)	165, 729
BshFI	GGCC	1 cut(s)	689
BshVI	ATCGAT	1 cut(s)	34
BsiHKAI	GWGCWC	3 cut(s)	132, 349, 797
BsiSI	CCGG	1 cut(s)	820
BslFI	GGGAC	1 cut(s)	739
BslI	CCNNNNNNNGG	3 cut(s)	139, 627, 826
BsmAI	GTCTC	2 cut(s)	345, 432
BsmBI	CGTCTC	1 cut(s)	432
BsmFI	GGGAC	1 cut(s)	739
BsnI	GGCC	1 cut(s)	689
Bso31I	GGTCTC	1 cut(s)	345
Bsp119I	TTCGAA	1 cut(s)	911
Bsp1286I	GDGCHC	3 cut(s)	132, 349, 797
Bsp143I	GATC	6 cut(s)	31, 233, 596, 693, 829, 925
Bsp19I	CCATGG	1 cut(s)	138
Bsp68I	TCGCGA	1 cut(s)	165
BspACI	CCGC	1 cut(s)	827
BspANI	GGCC	1 cut(s)	689
BspCNI	CTCAG	5 cut(s)	53, 271, 339, 820, 988
BspDI	ATCGAT	1 cut(s)	34
BspFNI	CGCG	2 cut(s)	165, 729
BspLI	GGNNCC	1 cut(s)	598
BspMI	ACCTGC	1 cut(s)	7
BspOI	GCTAGC	1 cut(s)	207
BspPI	GGATC	3 cut(s)	591, 604, 837
BspQI	GCTCTTC	1 cut(s)	891
BspT104I	TTCGAA	1 cut(s)	911
BspTI	CTTAAG	1 cut(s)	71
BspTNI	GGTCTC	1 cut(s)	345
BsrI	ACTGG	1 cut(s)	460
BssECI	CCNNGG	2 cut(s)	138, 858
BssMI	GATC	6 cut(s)	31, 233, 596, 693, 829, 925
BssNI	GRCGYC	1 cut(s)	441
BssSI	CACGAG	1 cut(s)	342
BssT1I	CCWWGG	2 cut(s)	138, 858
Bst2BI	CACGAG	1 cut(s)	342
Bst6I	CTCTTC	2 cut(s)	775, 891
BstACI	GRCGYC	1 cut(s)	441
BstAFI	CTTAAG	1 cut(s)	71
BstAPI	GCANNNNNTGC	2 cut(s)	563, 851
BstBI	TTCGAA	1 cut(s)	911
BstC8I	GCNNGC	6 cut(s)	116, 205, 542, 573, 727, 847
BstDEI	CTNAG	6 cut(s)	40, 279, 326, 409, 807, 975
BstDSI	CCRYGG	1 cut(s)	138
BstF5I	GGATG	2 cut(s)	253, 660
BstFNI	CGCG	2 cut(s)	165, 729
BstHHI	GCGC	1 cut(s)	731
BstKTI	GATC	6 cut(s)	34, 236, 599, 696, 832, 928
BstMAI	GTCTC	2 cut(s)	345, 432
BstMBI	GATC	6 cut(s)	31, 233, 596, 693, 829, 925
BstNSI	RCATGY	1 cut(s)	364
BstSCI	CCNGG	1 cut(s)	818
BstSLI	GKGCMC	1 cut(s)	349
BstUI	CGCG	2 cut(s)	165, 729
BstV1I	GCAGC	5 cut(s)	130, 841, 850, 969, 991
BstV2I	GAAGAC	2 cut(s)	420, 628
BstX2I	RGATCY	2 cut(s)	233, 596
BstYI	RGATCY	2 cut(s)	233, 596
Bsu15I	ATCGAT	1 cut(s)	34
BsuRI	GGCC	1 cut(s)	689
BsuTUI	ATCGAT	1 cut(s)	34
BtgI	CCRYGG	1 cut(s)	138
BtrI	CACGTC	1 cut(s)	418
BtsCI	GGATG	2 cut(s)	253, 660
BtsI	GCAGTG	1 cut(s)	699
BtsIMutI	CAGTG	4 cut(s)	334, 467, 675, 699
BtuMI	TCGCGA	1 cut(s)	165
BveI	ACCTGC	1 cut(s)	7
Cac8I	GCNNGC	6 cut(s)	116, 205, 542, 573, 727, 847
CaiI	CAGNNNCTG	1 cut(s)	982
CfoI	GCGC	1 cut(s)	731
Cfr13I	GGNCC	1 cut(s)	79
ClaI	ATCGAT	1 cut(s)	34
CseI	GACGC	1 cut(s)	622
CviAII	CATG	4 cut(s)	90, 139, 361, 380
DdeI	CTNAG	6 cut(s)	40, 279, 326, 409, 807, 975
DpnI	GATC	6 cut(s)	33, 235, 598, 695, 831, 927
DpnII	GATC	6 cut(s)	31, 233, 596, 693, 829, 925
DrdI	GACNNNNNNGTC	1 cut(s)	50
DseDI	GACNNNNNNGTC	1 cut(s)	50
EaeI	YGGCCR	1 cut(s)	687
Eam1104I	CTCTTC	2 cut(s)	775, 891
EarI	CTCTTC	2 cut(s)	775, 891
Ecl136II	GAGCTC	2 cut(s)	130, 795
Eco130I	CCWWGG	2 cut(s)	138, 858
Eco24I	GRGCYC	2 cut(s)	132, 797
Eco31I	GGTCTC	1 cut(s)	345
Eco32I	GATATC	2 cut(s)	217, 403
Eco47I	GGWCC	1 cut(s)	79
Eco53kI	GAGCTC	2 cut(s)	130, 795
Eco57I	CTGAAG	1 cut(s)	447
EcoICRI	GAGCTC	2 cut(s)	130, 795
EcoRV	GATATC	2 cut(s)	217, 403
EcoT14I	CCWWGG	2 cut(s)	138, 858
EcoT38I	GRGCYC	2 cut(s)	132, 797
ErhI	CCWWGG	2 cut(s)	138, 858
Esp3I	CGTCTC	1 cut(s)	432
FaeI	CATG	4 cut(s)	93, 142, 364, 383
FaqI	GGGAC	1 cut(s)	739
FatI	CATG	4 cut(s)	89, 138, 360, 379
FbaI	TGATCA	1 cut(s)	925
Fnu4HI	GCNGC	5 cut(s)	119, 855, 864, 980, 983
FokI	GGATG	2 cut(s)	240, 647
FriOI	GRGCYC	2 cut(s)	132, 797
Fsp4HI	GCNGC	5 cut(s)	119, 855, 864, 980, 983
FspBI	CTAG	3 cut(s)	204, 375, 581
GlaI	GCGC	1 cut(s)	730
GluI	GCNGC	5 cut(s)	119, 855, 864, 980, 983
GsaI	CCCAGC	1 cut(s)	870
HaeIII	GGCC	1 cut(s)	689
HapII	CCGG	1 cut(s)	820
HgaI	GACGC	1 cut(s)	622
HhaI	GCGC	1 cut(s)	731
Hin1I	GRCGYC	1 cut(s)	441
Hin1II	CATG	4 cut(s)	93, 142, 364, 383
Hin6I	GCGC	1 cut(s)	729
HinP1I	GCGC	1 cut(s)	729
HindIII	AAGCTT	2 cut(s)	84, 947
HinfI	GANTC	5 cut(s)	281, 294, 332, 491, 746
HpaII	CCGG	1 cut(s)	820
HphI	GGTGA	1 cut(s)	485
Hpy166II	GTNNAC	1 cut(s)	347
Hpy188I	TCNGA	5 cut(s)	43, 221, 280, 499, 930
Hpy8I	GTNNAC	1 cut(s)	347
Hpy99I	CGWCG	2 cut(s)	446, 644
HpyAV	CCTTC	4 cut(s)	187, 295, 596, 768
HpyCH4IV	ACGT	3 cut(s)	417, 441, 752
HpyCH4V	TGCA	7 cut(s)	118, 307, 347, 434, 704, 711, 985
HpyF3I	CTNAG	6 cut(s)	40, 279, 326, 409, 807, 975
HpySE526I	ACGT	3 cut(s)	417, 441, 752
Hsp92I	GRCGYC	1 cut(s)	441
Hsp92II	CATG	4 cut(s)	93, 142, 364, 383
HspAI	GCGC	1 cut(s)	729
Ksp22I	TGATCA	1 cut(s)	925
Kzo9I	GATC	6 cut(s)	31, 233, 596, 693, 829, 925
LguI	GCTCTTC	1 cut(s)	891
LmnI	GCTCC	3 cut(s)	135, 623, 630
Lsp1109I	GCAGC	5 cut(s)	130, 841, 850, 969, 991
LweI	GCATC	6 cut(s)	26, 46, 190, 421, 584, 805
MaeI	CTAG	3 cut(s)	204, 375, 581
MaeII	ACGT	3 cut(s)	417, 441, 752
MaeIII	GTNAC	1 cut(s)	227
MalI	GATC	6 cut(s)	33, 235, 598, 695, 831, 927
MboI	GATC	6 cut(s)	31, 233, 596, 693, 829, 925
MflI	RGATCY	2 cut(s)	233, 596
MhlI	GDGCHC	3 cut(s)	132, 349, 797
MluCI	AATT	2 cut(s)	263, 705
MlyI	GAGTC	1 cut(s)	290
MmeI	TCCRAC	1 cut(s)	483
MseI	TTAA	4 cut(s)	21, 72, 246, 527
MslI	CAYNNNNRTG	1 cut(s)	140
MspA1I	CMGCKG	1 cut(s)	982
MspCI	CTTAAG	1 cut(s)	71
MspI	CCGG	1 cut(s)	820
MspR9I	CCNGG	1 cut(s)	820
MvnI	CGCG	2 cut(s)	165, 729
NciI	CCSGG	1 cut(s)	820
NcoI	CCATGG	1 cut(s)	138
NdeII	GATC	6 cut(s)	31, 233, 596, 693, 829, 925
NheI	GCTAGC	1 cut(s)	203
NlaIII	CATG	4 cut(s)	93, 142, 364, 383
NlaIV	GGNNCC	1 cut(s)	598
NmeAIII	GCCGAG	1 cut(s)	715
NruI	TCGCGA	1 cut(s)	165
NspI	RCATGY	1 cut(s)	364
NspV	TTCGAA	1 cut(s)	911
OliI	CACNNNNGTG	1 cut(s)	140
PciSI	GCTCTTC	1 cut(s)	891
PfeI	GAWTC	4 cut(s)	294, 332, 491, 746
PkrI	GCNGC	5 cut(s)	120, 856, 865, 981, 984
PleI	GAGTC	1 cut(s)	289
PpsI	GAGTC	1 cut(s)	289
Psp124BI	GAGCTC	2 cut(s)	132, 797
PspFI	CCCAGC	1 cut(s)	866
PspN4I	GGNNCC	1 cut(s)	598
PspPI	GGNCC	1 cut(s)	79
PstNI	CAGNNNCTG	1 cut(s)	982
PsuI	RGATCY	2 cut(s)	233, 596
PvuII	CAGCTG	1 cut(s)	982
RruI	TCGCGA	1 cut(s)	165
RseI	CAYNNNNRTG	1 cut(s)	140
SacI	GAGCTC	2 cut(s)	132, 797
SapI	GCTCTTC	1 cut(s)	891
SaqAI	TTAA	4 cut(s)	21, 72, 246, 527
SatI	GCNGC	5 cut(s)	119, 855, 864, 980, 983
Sau3AI	GATC	6 cut(s)	31, 233, 596, 693, 829, 925
Sau96I	GGNCC	1 cut(s)	79
SchI	GAGTC	1 cut(s)	290
ScrFI	CCNGG	1 cut(s)	820
SduI	GDGCHC	3 cut(s)	132, 349, 797
SfaNI	GCATC	6 cut(s)	26, 46, 190, 421, 584, 805
SfuI	TTCGAA	1 cut(s)	911
SinI	GGWCC	1 cut(s)	79
SmiMI	CAYNNNNRTG	1 cut(s)	140
SmlI	CTYRAG	2 cut(s)	71, 653
SmoI	CTYRAG	2 cut(s)	71, 653
SpeI	ACTAGT	1 cut(s)	580
Sse9I	AATT	2 cut(s)	263, 705
SsiI	CCGC	1 cut(s)	827
SspMI	CTAG	3 cut(s)	204, 375, 581
SstI	GAGCTC	2 cut(s)	132, 797
StyD4I	CCNGG	1 cut(s)	818
StyI	CCWWGG	2 cut(s)	138, 858
TaiI	ACGT	3 cut(s)	420, 444, 755
TaqI	TCGA	9 cut(s)	34, 54, 335, 466, 639, 744, 782, 876, 911
TasI	AATT	2 cut(s)	263, 705
TfiI	GAWTC	4 cut(s)	294, 332, 491, 746
Tru1I	TTAA	4 cut(s)	21, 72, 246, 527
Tru9I	TTAA	4 cut(s)	21, 72, 246, 527
TscAI	CASTG	4 cut(s)	334, 467, 675, 706
TseI	GCWGC	5 cut(s)	118, 854, 863, 979, 982
TspDTI	ATGAA	4 cut(s)	78, 225, 762, 941
TspRI	CASTG	4 cut(s)	334, 467, 675, 706
Vha464I	CTTAAG	1 cut(s)	71
VneI	GTGCAC	1 cut(s)	345
VpaK11BI	GGWCC	1 cut(s)	79
XbaI	TCTAGA	1 cut(s)	374
XceI	RCATGY	1 cut(s)	364
XcmI	CCANNNNNNNNNTGG	1 cut(s)	467
XspI	CTAG	3 cut(s)	204, 375, 581
ZraI	GACGTC	1 cut(s)	442

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.