Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0001728

Physical Location & Seq

Genomic Coordinates Reverse (-)

20328144 .. 20329166

Gene Structure 1023 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG232700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 528 bp

ATGGTGCTTGGCAATAACTTCATTCTCGAAACTCACTATGACATACTATCTGTGAAGGAAGATGCAAGCTATGAAGATATCCGAACAAGCTACAGATCTGCCATCCTTAATAGTCATCCTGATAAACTACAAGCTACATCTGAGTCAGGAGATAGATTCTTGAAGGTGCAAAAGGCTTGGGAAATCCTCAGTGATTCGAGGTCTCGTGCACTTGATGACAATATGCTAATAGCTTCTAGACATGACACCTTTGTAGCCGATGATATCAGCTTAGAAGACGTGATGGCTGAAGATGCAGGAGACGTCATTCAACTCTTTTACCAGTGTCGATGTGGTGATTATTACTTTGTTGATTCTTCGGAGTTGGAGAAAATGGGGTATGCTTTGTTAAGAGATGGTAGCAAGCTATGTTTTGAGGCACAAAATGGTTTGCCAGCATCACTAGTCCTTCCTTGCGGGTCTTGTTCTTTGAAAGTTCGTATATTGATCAATCCAGACGATTTTGTTTCTATTGGTCATCATCACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006417 GO:0006448 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0010608 GO:0017182 GO:0017183 GO:0018193 GO:0018202 GO:0019222 GO:0019538 GO:0031323 GO:0031326 GO:0032268 GO:0034248 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0050789 GO:0050794 GO:0051171 GO:0051246 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:1900247 GO:1901564 GO:2000112 GO:2000765

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DnaJ zf-CSL

Protein Analysis

175

Amino Acids

19.66

Weight (kDa)

4.69

Isoelectric Point (pI)

43.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DnaJ	PF00226	11 - 70	9e-17	DnaJ domain
Zn_ribbon_CSL	PF05207	87 - 162	2.1e-09	CSL zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001728)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G10130 AT4G10130 AT4G10130 AT4G10130 AT4G10130
fragaria_vesca	FvH4_2g34630
malus_domestica	MD08G1103500.v1.1 MD08G1103600.v1.1 MD15G1084800.v1.1 MD15G1084900.v1.1
prunus_persica	Prupe.1G438600_v2.0.a1 Prupe.1G438700_v2.0.a1
pyrus_communis	pycom08g08490 pycom08g08500 pycom15g08020
rosa_chinensis	RchiOBHm_Chr5g0002021 RchiOBHm_Chr6g0307441 RchiOBHm_Chr6g0307451 RchiOBHm_Chr7g0208301
rosa_laevigata	RLG00000003231 RLG00000010712 RLG00000010713
rosa_multiflora	Rmu_sc0000031.1_g000018 Rmu_sc0000841.1_g000020 Rmu_sc0007869.1_g000024
rosa_roxburghii	Rroxscaffold_3G00250600 Rroxscaffold_7G00160990
rosa_rugosa	Rorug01G0242800 Rorug04G0397800 Rorug06G0145700 Rorug06G0358700 Rorug06G0358700 Rorug07G0102800 Rorug07G0102800 Rorug07G0102900.1
rosa_samantha	Rh1BG163200 Rh1DG193900 Rh6BG430400 Rh6CG484400 Rh6CG484500 Rh6DG471100 Rh6DG471200 Rh7AG237200 Rh7BG232700 Rh7CG253100 Rh7DG243200
rosa_wichuraiana	Rw6G040910 Rw7G020240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	306
AciI	CCGC	1 cut(s)	456
AcuI	CTGAAG	1 cut(s)	309
AcyI	GRCGYC	1 cut(s)	303
AgsI	TTSAA	3 cut(s)	163, 311, 472
AhlI	ACTAGT	1 cut(s)	442
AjiI	CACGTC	1 cut(s)	280
AluBI	AGCT	6 cut(s)	69, 90, 134, 233, 270, 406
AluI	AGCT	6 cut(s)	69, 90, 134, 233, 270, 406
Alw21I	GWGCWC	1 cut(s)	211
Alw26I	GTCTC	2 cut(s)	207, 294
Alw44I	GTGCAC	1 cut(s)	207
ApaLI	GTGCAC	1 cut(s)	207
AsuHPI	GGTGA	1 cut(s)	347
BaeGI	GKGCMC	1 cut(s)	211
BauI	CACGAG	1 cut(s)	204
BbsI	GAAGAC	1 cut(s)	282
Bbv12I	GWGCWC	1 cut(s)	211
BccI	CCATC	3 cut(s)	110, 277, 389
BclI	TGATCA	1 cut(s)	486
BcoDI	GTCTC	2 cut(s)	207, 294
BcuI	ACTAGT	1 cut(s)	442
BfaI	CTAG	2 cut(s)	237, 443
BfmI	CTRYAG	1 cut(s)	91
BglII	AGATCT	1 cut(s)	95
BmgBI	CACGTC	1 cut(s)	280
BmsI	GCATC	3 cut(s)	52, 283, 446
BpiI	GAAGAC	1 cut(s)	282
BsaHI	GRCGYC	1 cut(s)	303
BsaI	GGTCTC	1 cut(s)	207
Bse1I	ACTGG	1 cut(s)	322
BseGI	GGATG	2 cut(s)	102, 115
BseMII	CTCAG	2 cut(s)	132, 202
BseNI	ACTGG	1 cut(s)	322
BseSI	GKGCMC	1 cut(s)	211
BsiHKAI	GWGCWC	1 cut(s)	211
BsmAI	GTCTC	2 cut(s)	207, 294
BsmBI	CGTCTC	1 cut(s)	294
Bso31I	GGTCTC	1 cut(s)	207
Bsp1286I	GDGCHC	1 cut(s)	211
Bsp143I	GATC	2 cut(s)	95, 486
BspACI	CCGC	1 cut(s)	456
BspCNI	CTCAG	2 cut(s)	133, 201
BspTNI	GGTCTC	1 cut(s)	207
BsrI	ACTGG	1 cut(s)	322
BssMI	GATC	2 cut(s)	95, 486
BssNI	GRCGYC	1 cut(s)	303
BssSI	CACGAG	1 cut(s)	204
Bst2BI	CACGAG	1 cut(s)	204
BstACI	GRCGYC	1 cut(s)	303
BstC8I	GCNNGC	3 cut(s)	67, 404, 435
BstDEI	CTNAG	3 cut(s)	141, 188, 271
BstF5I	GGATG	2 cut(s)	102, 115
BstKTI	GATC	2 cut(s)	98, 489
BstMAI	GTCTC	2 cut(s)	207, 294
BstMBI	GATC	2 cut(s)	95, 486
BstMWI	GCNNNNNNNGC	1 cut(s)	293
BstSFI	CTRYAG	1 cut(s)	91
BstSLI	GKGCMC	1 cut(s)	211
BstV2I	GAAGAC	1 cut(s)	282
BstX2I	RGATCY	1 cut(s)	95
BstYI	RGATCY	1 cut(s)	95
BtrI	CACGTC	1 cut(s)	280
BtsCI	GGATG	2 cut(s)	102, 115
BtsIMutI	CAGTG	3 cut(s)	196, 329, 523
Cac8I	GCNNGC	3 cut(s)	67, 404, 435
CviAII	CATG	1 cut(s)	242
CviJI	RGCY	9 cut(s)	69, 90, 134, 176, 233, 257, 270, 287, 406
CviKI_1	RGCY	9 cut(s)	69, 90, 134, 176, 233, 257, 270, 287, 406
DdeI	CTNAG	3 cut(s)	141, 188, 271
DpnI	GATC	2 cut(s)	97, 488
DpnII	GATC	2 cut(s)	95, 486
Eco31I	GGTCTC	1 cut(s)	207
Eco32I	GATATC	2 cut(s)	79, 265
Eco57I	CTGAAG	1 cut(s)	309
EcoRV	GATATC	2 cut(s)	79, 265
Esp3I	CGTCTC	1 cut(s)	294
FaeI	CATG	1 cut(s)	245
FaiI	YATR	8 cut(s)	39, 44, 72, 224, 243, 381, 409, 482
FatI	CATG	1 cut(s)	241
FauI	CCCGC	1 cut(s)	449
FbaI	TGATCA	1 cut(s)	486
FokI	GGATG	2 cut(s)	89, 102
FspBI	CTAG	2 cut(s)	237, 443
Hin1I	GRCGYC	1 cut(s)	303
Hin1II	CATG	1 cut(s)	245
HinfI	GANTC	4 cut(s)	143, 156, 194, 353
HphI	GGTGA	1 cut(s)	347
Hpy166II	GTNNAC	1 cut(s)	209
Hpy188I	TCNGA	3 cut(s)	83, 142, 361
Hpy188III	TCNNGA	6 cut(s)	26, 119, 147, 160, 237, 494
Hpy8I	GTNNAC	1 cut(s)	209
HpyAV	CCTTC	3 cut(s)	49, 157, 458
HpyCH4IV	ACGT	2 cut(s)	279, 303
HpyCH4V	TGCA	4 cut(s)	65, 169, 209, 296
HpyF10VI	GCNNNNNNNGC	1 cut(s)	293
HpyF3I	CTNAG	3 cut(s)	141, 188, 271
HpySE526I	ACGT	2 cut(s)	279, 303
Hsp92I	GRCGYC	1 cut(s)	303
Hsp92II	CATG	1 cut(s)	245
Ksp22I	TGATCA	1 cut(s)	486
Kzo9I	GATC	2 cut(s)	95, 486
LpnPI	CCDG	6 cut(s)	132, 132, 282, 335, 447, 507
LweI	GCATC	3 cut(s)	52, 283, 446
MaeI	CTAG	2 cut(s)	237, 443
MaeII	ACGT	2 cut(s)	279, 303
MalI	GATC	2 cut(s)	97, 488
MboI	GATC	2 cut(s)	95, 486
MboII	GAAGA	5 cut(s)	71, 86, 287, 302, 348
MflI	RGATCY	1 cut(s)	95
MhlI	GDGCHC	1 cut(s)	211
MlyI	GAGTC	1 cut(s)	152
MmeI	TCCRAC	1 cut(s)	345
MnlI	CCTC	3 cut(s)	192, 197, 409
MseI	TTAA	2 cut(s)	108, 389
MwoI	GCNNNNNNNGC	1 cut(s)	293
NdeII	GATC	2 cut(s)	95, 486
NlaIII	CATG	1 cut(s)	245
PfeI	GAWTC	3 cut(s)	156, 194, 353
PleI	GAGTC	1 cut(s)	151
PpsI	GAGTC	1 cut(s)	151
PsuI	RGATCY	1 cut(s)	95
SaqAI	TTAA	2 cut(s)	108, 389
Sau3AI	GATC	2 cut(s)	95, 486
SchI	GAGTC	1 cut(s)	152
SduI	GDGCHC	1 cut(s)	211
SfaNI	GCATC	3 cut(s)	52, 283, 446
SfcI	CTRYAG	1 cut(s)	91
SpeI	ACTAGT	1 cut(s)	442
SsiI	CCGC	1 cut(s)	456
SspMI	CTAG	2 cut(s)	237, 443
TaiI	ACGT	2 cut(s)	282, 306
TaqI	TCGA	3 cut(s)	27, 197, 328
TfiI	GAWTC	3 cut(s)	156, 194, 353
Tru1I	TTAA	2 cut(s)	108, 389
Tru9I	TTAA	2 cut(s)	108, 389
TscAI	CASTG	2 cut(s)	196, 329
TspDTI	ATGAA	2 cut(s)	10, 87
TspRI	CASTG	2 cut(s)	196, 329
VneI	GTGCAC	1 cut(s)	207
XbaI	TCTAGA	1 cut(s)	236
XcmI	CCANNNNNNNNNTGG	1 cut(s)	329
XspI	CTAG	2 cut(s)	237, 443
ZraI	GACGTC	1 cut(s)	304

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.