Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000031.1

Orthogroup ID

OG0001728

Physical Location & Seq

Genomic Coordinates Reverse (-)

93245 .. 94740

Gene Structure 1496 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000031.1_g000018.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 825 bp

atggtgcttggcaatcagtccattcgcgaaactcactatgacatactatctgcgaaggaagatgctagctacgaagatatccgaacaagctacagatctgccatacttaatagtcatcctgataaattacaagctgcatctgagtcaggagatagattcttgaaggtgcaaaaggcttgggaaatcctcagtgattcgaggtctcgtgcactatatgacaacatgctaatagcttctaggcatgacacttttgtagctgatgatatcagcttagaagacgtgatggctgaagatgcaggagacgtcattcagctattttaccagtgtcgatgtggtgattattactttgttgattctctggagttggagaaaatggggtatgctttgttaagagatggttctgatcccaactccccggaaatgggttcttcccagaaaagctcccaatggaggagcgtcttcgacggcgtgaaactcaagaccatcccatcagtgccagaagctctaatggccgagatcaacactgcaatttgcaatcttgaatacgcacgcgcctctgttcttctcgaatctacgtccccttcttcttcctcttcttcaatctccaagaatgagagctctgctcaacctcagtttgatgcccggaaagcggatcaggcttacaaggcaggctgtgctgccttggctgctgggaagctcgatgaggctcttctgtcattgaatgtttcgctttcgaaatgcccacctgatcagacctctgccgttgcgaagcttcattcgcttatctctctcacatctcagcagctgtacaaacccaccaactga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006417 GO:0006448 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0010608 GO:0017182 GO:0017183 GO:0018193 GO:0018202 GO:0019222 GO:0019538 GO:0031323 GO:0031326 GO:0032268 GO:0034248 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0050789 GO:0050794 GO:0051171 GO:0051246 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:1900247 GO:1901564 GO:2000112 GO:2000765

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DnaJ zf-CSL

Protein Analysis

274

Amino Acids

30.03

Weight (kDa)

4.87

Isoelectric Point (pI)

50.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001728)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G10130 AT4G10130 AT4G10130 AT4G10130 AT4G10130
fragaria_vesca	FvH4_2g34630
malus_domestica	MD08G1103500.v1.1 MD08G1103600.v1.1 MD15G1084800.v1.1 MD15G1084900.v1.1
prunus_persica	Prupe.1G438600_v2.0.a1 Prupe.1G438700_v2.0.a1
pyrus_communis	pycom08g08490 pycom08g08500 pycom15g08020
rosa_chinensis	RchiOBHm_Chr5g0002021 RchiOBHm_Chr6g0307441 RchiOBHm_Chr6g0307451 RchiOBHm_Chr7g0208301
rosa_laevigata	RLG00000003231 RLG00000010712 RLG00000010713
rosa_multiflora	Rmu_sc0000031.1_g000018 Rmu_sc0000841.1_g000020 Rmu_sc0007869.1_g000024
rosa_roxburghii	Rroxscaffold_3G00250600 Rroxscaffold_7G00160990
rosa_rugosa	Rorug01G0242800 Rorug04G0397800 Rorug06G0145700 Rorug06G0358700 Rorug06G0358700 Rorug07G0102800 Rorug07G0102800 Rorug07G0102900.1
rosa_samantha	Rh1BG163200 Rh1DG193900 Rh6BG430400 Rh6CG484400 Rh6CG484500 Rh6DG471100 Rh6DG471200 Rh7AG237200 Rh7BG232700 Rh7CG253100 Rh7DG243200
rosa_wichuraiana	Rw6G040910 Rw7G020240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	306
AccII	CGCG	2 cut(s)	27, 552
AciI	CCGC	1 cut(s)	650
AclWI	GGATC	2 cut(s)	398, 660
AcoI	YGGCCR	1 cut(s)	510
AcuI	CTGAAG	1 cut(s)	309
AcyI	GRCGYC	1 cut(s)	303
AfaI	GTAC	1 cut(s)	809
AfiI	CCNNNNNNNGG	4 cut(s)	421, 422, 450, 649
AgsI	TTSAA	4 cut(s)	163, 542, 600, 721
AjiI	CACGTC	1 cut(s)	280
Alw21I	GWGCWC	2 cut(s)	211, 620
Alw26I	GTCTC	2 cut(s)	207, 294
Alw44I	GTGCAC	1 cut(s)	207
AlwI	GGATC	2 cut(s)	398, 660
AlwNI	CAGNNNCTG	1 cut(s)	805
AoxI	GGCC	1 cut(s)	510
ApaLI	GTGCAC	1 cut(s)	207
ApeKI	GCWGC	4 cut(s)	134, 677, 686, 802
AspLEI	GCGC	1 cut(s)	554
AsuC2I	CCSGG	2 cut(s)	416, 643
AsuHPI	GGTGA	1 cut(s)	347
AsuII	TTCGAA	1 cut(s)	734
AsuNHI	GCTAGC	1 cut(s)	65
BaeGI	GKGCMC	1 cut(s)	211
BanII	GRGCYC	1 cut(s)	620
BauI	CACGAG	1 cut(s)	204
BbsI	GAAGAC	2 cut(s)	282, 451
Bbv12I	GWGCWC	2 cut(s)	211, 620
BbvI	GCAGC	4 cut(s)	121, 664, 673, 814
BccI	CCATC	4 cut(s)	277, 389, 491, 496
BceAI	ACGGC	2 cut(s)	481, 746
BclI	TGATCA	1 cut(s)	748
BcnI	CCSGG	2 cut(s)	416, 643
BcoDI	GTCTC	2 cut(s)	207, 294
BfaI	CTAG	2 cut(s)	66, 237
BfmI	CTRYAG	1 cut(s)	91
BglII	AGATCT	1 cut(s)	95
BisI	GCNGC	4 cut(s)	135, 678, 687, 803
BlsI	GCNGC	4 cut(s)	136, 679, 688, 804
Bme1390I	CCNGG	2 cut(s)	416, 643
BmgBI	CACGTC	1 cut(s)	280
BmrFI	CCNGG	2 cut(s)	416, 643
BmsI	GCATC	4 cut(s)	52, 146, 283, 628
BmtI	GCTAGC	1 cut(s)	69
BpiI	GAAGAC	2 cut(s)	282, 451
BplI	GAGNNNNNCTC	2 cut(s)	607, 639
BpmI	CTGGAG	1 cut(s)	380
Bpu14I	TTCGAA	1 cut(s)	734
BpuEI	CTTGAG	1 cut(s)	461
BpuMI	CCSGG	2 cut(s)	416, 643
BsaHI	GRCGYC	1 cut(s)	303
BsaI	GGTCTC	1 cut(s)	207
BsaJI	CCNNGG	2 cut(s)	414, 681
Bsc4I	CCNNNNNNNGG	4 cut(s)	421, 422, 450, 649
Bse1I	ACTGG	1 cut(s)	322
BseDI	CCNNGG	2 cut(s)	414, 681
BseGI	GGATG	2 cut(s)	115, 483
BseLI	CCNNNNNNNGG	4 cut(s)	421, 422, 450, 649
BseMII	CTCAG	4 cut(s)	132, 202, 644, 812
BseNI	ACTGG	1 cut(s)	322
BseRI	GAGGAG	1 cut(s)	466
BseSI	GKGCMC	1 cut(s)	211
BseXI	GCAGC	4 cut(s)	121, 664, 673, 814
BseYI	CCCAGC	1 cut(s)	689
Bsh1236I	CGCG	2 cut(s)	27, 552
BshFI	GGCC	1 cut(s)	512
BsiHKAI	GWGCWC	2 cut(s)	211, 620
BsiSI	CCGG	2 cut(s)	416, 643
BslFI	GGGAC	1 cut(s)	562
BslI	CCNNNNNNNGG	4 cut(s)	421, 422, 450, 649
BsmAI	GTCTC	2 cut(s)	207, 294
BsmBI	CGTCTC	1 cut(s)	294
BsmFI	GGGAC	1 cut(s)	562
BsnI	GGCC	1 cut(s)	512
Bso31I	GGTCTC	1 cut(s)	207
Bsp119I	TTCGAA	1 cut(s)	734
Bsp1286I	GDGCHC	2 cut(s)	211, 620
Bsp1407I	TGTACA	1 cut(s)	807
Bsp143I	GATC	5 cut(s)	95, 403, 516, 652, 748
Bsp68I	TCGCGA	1 cut(s)	27
BspACI	CCGC	1 cut(s)	650
BspANI	GGCC	1 cut(s)	512
BspCNI	CTCAG	4 cut(s)	133, 201, 643, 811
BspFNI	CGCG	2 cut(s)	27, 552
BspOI	GCTAGC	1 cut(s)	69
BspPI	GGATC	2 cut(s)	398, 660
BspQI	GCTCTTC	1 cut(s)	714
BspT104I	TTCGAA	1 cut(s)	734
BspTNI	GGTCTC	1 cut(s)	207
BsrGI	TGTACA	1 cut(s)	807
BsrI	ACTGG	1 cut(s)	322
BssECI	CCNNGG	2 cut(s)	414, 681
BssMI	GATC	5 cut(s)	95, 403, 516, 652, 748
BssNI	GRCGYC	1 cut(s)	303
BssSI	CACGAG	1 cut(s)	204
BssT1I	CCWWGG	1 cut(s)	681
Bst2BI	CACGAG	1 cut(s)	204
Bst6I	CTCTTC	2 cut(s)	598, 714
BstACI	GRCGYC	1 cut(s)	303
BstAPI	GCANNNNNTGC	1 cut(s)	674
BstAUI	TGTACA	1 cut(s)	807
BstBI	TTCGAA	1 cut(s)	734
BstC8I	GCNNGC	3 cut(s)	67, 550, 670
BstDEI	CTNAG	5 cut(s)	141, 188, 271, 630, 798
BstF5I	GGATG	2 cut(s)	115, 483
BstFNI	CGCG	2 cut(s)	27, 552
BstHHI	GCGC	1 cut(s)	554
BstKTI	GATC	5 cut(s)	98, 406, 519, 655, 751
BstMAI	GTCTC	2 cut(s)	207, 294
BstMBI	GATC	5 cut(s)	95, 403, 516, 652, 748
BstMWI	GCNNNNNNNGC	9 cut(s)	293, 509, 647, 656, 665, 674, 683, 686, 778
BstNSI	RCATGY	1 cut(s)	226
BstSCI	CCNGG	2 cut(s)	414, 641
BstSFI	CTRYAG	1 cut(s)	91
BstSLI	GKGCMC	1 cut(s)	211
BstUI	CGCG	2 cut(s)	27, 552
BstV1I	GCAGC	4 cut(s)	121, 664, 673, 814
BstV2I	GAAGAC	2 cut(s)	282, 451
BstX2I	RGATCY	1 cut(s)	95
BstYI	RGATCY	1 cut(s)	95
BsuRI	GGCC	1 cut(s)	512
BtrI	CACGTC	1 cut(s)	280
BtsCI	GGATG	2 cut(s)	115, 483
BtsI	GCAGTG	1 cut(s)	522
BtsIMutI	CAGTG	4 cut(s)	196, 329, 498, 522
BtuMI	TCGCGA	1 cut(s)	27
Cac8I	GCNNGC	3 cut(s)	67, 550, 670
CaiI	CAGNNNCTG	1 cut(s)	805
CfoI	GCGC	1 cut(s)	554
CseI	GACGC	1 cut(s)	445
Csp6I	GTAC	1 cut(s)	808
CviAII	CATG	2 cut(s)	223, 242
CviQI	GTAC	1 cut(s)	808
DdeI	CTNAG	5 cut(s)	141, 188, 271, 630, 798
DpnI	GATC	5 cut(s)	97, 405, 518, 654, 750
DpnII	GATC	5 cut(s)	95, 403, 516, 652, 748
EaeI	YGGCCR	1 cut(s)	510
Eam1104I	CTCTTC	2 cut(s)	598, 714
EarI	CTCTTC	2 cut(s)	598, 714
Ecl136II	GAGCTC	1 cut(s)	618
Eco130I	CCWWGG	1 cut(s)	681
Eco24I	GRGCYC	1 cut(s)	620
Eco31I	GGTCTC	1 cut(s)	207
Eco32I	GATATC	2 cut(s)	79, 265
Eco53kI	GAGCTC	1 cut(s)	618
Eco57I	CTGAAG	1 cut(s)	309
EcoICRI	GAGCTC	1 cut(s)	618
EcoRV	GATATC	2 cut(s)	79, 265
EcoT14I	CCWWGG	1 cut(s)	681
EcoT38I	GRGCYC	1 cut(s)	620
ErhI	CCWWGG	1 cut(s)	681
Esp3I	CGTCTC	1 cut(s)	294
FaeI	CATG	2 cut(s)	226, 245
FaiI	YATR	8 cut(s)	39, 44, 104, 214, 216, 224, 243, 381
FaqI	GGGAC	1 cut(s)	562
FatI	CATG	2 cut(s)	222, 241
FbaI	TGATCA	1 cut(s)	748
Fnu4HI	GCNGC	4 cut(s)	135, 678, 687, 803
FokI	GGATG	2 cut(s)	102, 470
FriOI	GRGCYC	1 cut(s)	620
Fsp4HI	GCNGC	4 cut(s)	135, 678, 687, 803
FspBI	CTAG	2 cut(s)	66, 237
GlaI	GCGC	1 cut(s)	553
GluI	GCNGC	4 cut(s)	135, 678, 687, 803
GsaI	CCCAGC	1 cut(s)	693
GsuI	CTGGAG	1 cut(s)	380
HaeIII	GGCC	1 cut(s)	512
HapII	CCGG	2 cut(s)	416, 643
HgaI	GACGC	1 cut(s)	445
HhaI	GCGC	1 cut(s)	554
Hin1I	GRCGYC	1 cut(s)	303
Hin1II	CATG	2 cut(s)	226, 245
Hin6I	GCGC	1 cut(s)	552
HinP1I	GCGC	1 cut(s)	552
HindIII	AAGCTT	1 cut(s)	770
HinfI	GANTC	5 cut(s)	143, 156, 194, 353, 569
HpaII	CCGG	2 cut(s)	416, 643
HphI	GGTGA	1 cut(s)	347
Hpy166II	GTNNAC	1 cut(s)	209
Hpy188I	TCNGA	4 cut(s)	83, 142, 403, 753
Hpy188III	TCNNGA	8 cut(s)	26, 119, 147, 160, 359, 478, 539, 566
Hpy8I	GTNNAC	1 cut(s)	209
Hpy99I	CGWCG	1 cut(s)	467
HpyAV	CCTTC	3 cut(s)	49, 157, 591
HpyCH4IV	ACGT	3 cut(s)	279, 303, 575
HpyCH4V	TGCA	6 cut(s)	137, 169, 209, 296, 527, 534
HpyF10VI	GCNNNNNNNGC	9 cut(s)	293, 509, 647, 656, 665, 674, 683, 686, 778
HpyF3I	CTNAG	5 cut(s)	141, 188, 271, 630, 798
HpySE526I	ACGT	3 cut(s)	279, 303, 575
Hsp92I	GRCGYC	1 cut(s)	303
Hsp92II	CATG	2 cut(s)	226, 245
HspAI	GCGC	1 cut(s)	552
Ksp22I	TGATCA	1 cut(s)	748
Kzo9I	GATC	5 cut(s)	95, 403, 516, 652, 748
LguI	GCTCTTC	1 cut(s)	714
LmnI	GCTCC	2 cut(s)	446, 453
Lsp1109I	GCAGC	4 cut(s)	121, 664, 673, 814
LweI	GCATC	4 cut(s)	52, 146, 283, 628
MaeI	CTAG	2 cut(s)	66, 237
MaeII	ACGT	3 cut(s)	279, 303, 575
MalI	GATC	5 cut(s)	97, 405, 518, 654, 750
MboI	GATC	5 cut(s)	95, 403, 516, 652, 748
MflI	RGATCY	1 cut(s)	95
MhlI	GDGCHC	2 cut(s)	211, 620
MluCI	AATT	2 cut(s)	125, 528
MlyI	GAGTC	1 cut(s)	152
MmeI	TCCRAC	1 cut(s)	345
MnlI	CCTC	8 cut(s)	192, 197, 444, 565, 601, 639, 697, 766
MseI	TTAA	2 cut(s)	108, 389
MspA1I	CMGCKG	1 cut(s)	805
MspI	CCGG	2 cut(s)	416, 643
MspR9I	CCNGG	2 cut(s)	416, 643
MvnI	CGCG	2 cut(s)	27, 552
MwoI	GCNNNNNNNGC	9 cut(s)	293, 509, 647, 656, 665, 674, 683, 686, 778
NciI	CCSGG	2 cut(s)	416, 643
NdeII	GATC	5 cut(s)	95, 403, 516, 652, 748
NheI	GCTAGC	1 cut(s)	65
NlaIII	CATG	2 cut(s)	226, 245
NmeAIII	GCCGAG	1 cut(s)	538
NruI	TCGCGA	1 cut(s)	27
NspI	RCATGY	1 cut(s)	226
NspV	TTCGAA	1 cut(s)	734
PciSI	GCTCTTC	1 cut(s)	714
PfeI	GAWTC	4 cut(s)	156, 194, 353, 569
PkrI	GCNGC	4 cut(s)	136, 679, 688, 804
PleI	GAGTC	1 cut(s)	151
PpsI	GAGTC	1 cut(s)	151
Psp124BI	GAGCTC	1 cut(s)	620
PspFI	CCCAGC	1 cut(s)	689
PstNI	CAGNNNCTG	1 cut(s)	805
PsuI	RGATCY	1 cut(s)	95
PvuII	CAGCTG	1 cut(s)	805
RruI	TCGCGA	1 cut(s)	27
RsaI	GTAC	1 cut(s)	809
RsaNI	GTAC	1 cut(s)	808
SacI	GAGCTC	1 cut(s)	620
SapI	GCTCTTC	1 cut(s)	714
SaqAI	TTAA	2 cut(s)	108, 389
SatI	GCNGC	4 cut(s)	135, 678, 687, 803
Sau3AI	GATC	5 cut(s)	95, 403, 516, 652, 748
SchI	GAGTC	1 cut(s)	152
ScrFI	CCNGG	2 cut(s)	416, 643
SduI	GDGCHC	2 cut(s)	211, 620
SfaNI	GCATC	4 cut(s)	52, 146, 283, 628
SfcI	CTRYAG	1 cut(s)	91
SfuI	TTCGAA	1 cut(s)	734
SmlI	CTYRAG	1 cut(s)	476
SmoI	CTYRAG	1 cut(s)	476
Sse9I	AATT	2 cut(s)	125, 528
SsiI	CCGC	1 cut(s)	650
SspMI	CTAG	2 cut(s)	66, 237
SstI	GAGCTC	1 cut(s)	620
StyD4I	CCNGG	2 cut(s)	414, 641
StyI	CCWWGG	1 cut(s)	681
TaiI	ACGT	3 cut(s)	282, 306, 578
TaqI	TCGA	6 cut(s)	197, 328, 462, 567, 699, 734
TasI	AATT	2 cut(s)	125, 528
TatI	WGTACW	1 cut(s)	807
TfiI	GAWTC	4 cut(s)	156, 194, 353, 569
Tru1I	TTAA	2 cut(s)	108, 389
Tru9I	TTAA	2 cut(s)	108, 389
TscAI	CASTG	4 cut(s)	196, 329, 498, 529
TseI	GCWGC	4 cut(s)	134, 677, 686, 802
TspDTI	ATGAA	1 cut(s)	764
TspRI	CASTG	4 cut(s)	196, 329, 498, 529
VneI	GTGCAC	1 cut(s)	207
XceI	RCATGY	1 cut(s)	226
XcmI	CCANNNNNNNNNTGG	1 cut(s)	329
XspI	CTAG	2 cut(s)	66, 237
ZraI	GACGTC	1 cut(s)	304

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.