Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0001728

Physical Location & Seq

Genomic Coordinates Forward (+)

5857376 .. 5858585

Gene Structure 1210 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1084900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 324 bp

ATGCCGGAAGCTCTAATGGCGGAGATCAACACAGCAATCTGCAATCTCGAGTACGCACGCGCCACCGCTCTTGTCGACTCTCCGTCTTCTTTGTCTTCGACGGCGAAAACCGAGATCCCTGATCAACCGGAATACAATGCACGAATGGCGGACCAAGCCTACAAGGCAGGCTGCGCAGCCTTGGCAGCTGGGAAACTCGACGAGGCCCTTCTCTCTCTGAACACTTCTCTCTCTATGTGCCCGCCTGATCAGACCTCTGCGGTGACCAAGCTCCACTCTTTGATCTCTCTCACATCTCGGCAGCTCCATAAGTCCACCAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

108

Amino Acids

11.31

Weight (kDa)

5.19

Isoelectric Point (pI)

41.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001728)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G10130 AT4G10130 AT4G10130 AT4G10130 AT4G10130
fragaria_vesca	FvH4_2g34630
malus_domestica	MD08G1103500.v1.1 MD08G1103600.v1.1 MD15G1084800.v1.1 MD15G1084900.v1.1
prunus_persica	Prupe.1G438600_v2.0.a1 Prupe.1G438700_v2.0.a1
pyrus_communis	pycom08g08490 pycom08g08500 pycom15g08020
rosa_chinensis	RchiOBHm_Chr5g0002021 RchiOBHm_Chr6g0307441 RchiOBHm_Chr6g0307451 RchiOBHm_Chr7g0208301
rosa_laevigata	RLG00000003231 RLG00000010712 RLG00000010713
rosa_multiflora	Rmu_sc0000031.1_g000018 Rmu_sc0000841.1_g000020 Rmu_sc0007869.1_g000024
rosa_roxburghii	Rroxscaffold_3G00250600 Rroxscaffold_7G00160990
rosa_rugosa	Rorug01G0242800 Rorug04G0397800 Rorug06G0145700 Rorug06G0358700 Rorug06G0358700 Rorug07G0102800 Rorug07G0102800 Rorug07G0102900.1
rosa_samantha	Rh1BG163200 Rh1DG193900 Rh6BG430400 Rh6CG484400 Rh6CG484500 Rh6DG471100 Rh6DG471200 Rh7AG237200 Rh7BG232700 Rh7CG253100 Rh7DG243200
rosa_wichuraiana	Rw6G040910 Rw7G020240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	175
AccBSI	CCGCTC	1 cut(s)	68
AccI	GTMKAC	1 cut(s)	75
AccII	CGCG	1 cut(s)	60
AciI	CCGC	5 cut(s)	20, 66, 149, 242, 260
AclWI	GGATC	1 cut(s)	109
AfaI	GTAC	1 cut(s)	53
AhdI	GACNNNNNGTC	1 cut(s)	82
AluBI	AGCT	5 cut(s)	11, 188, 271, 304, 321
AluI	AGCT	5 cut(s)	11, 188, 271, 304, 321
AlwI	GGATC	1 cut(s)	109
Ama87I	CYCGRG	1 cut(s)	47
AoxI	GGCC	1 cut(s)	204
ApeKI	GCWGC	4 cut(s)	171, 176, 185, 301
AspLEI	GCGC	2 cut(s)	62, 176
AspS9I	GGNCC	2 cut(s)	151, 205
AsuHPI	GGTGA	1 cut(s)	274
AvaI	CYCGRG	1 cut(s)	47
AvaII	GGWCC	1 cut(s)	151
BaeGI	GKGCMC	1 cut(s)	242
BbsI	GAAGAC	2 cut(s)	78, 87
BbvI	GCAGC	4 cut(s)	158, 188, 197, 313
BceAI	ACGGC	1 cut(s)	117
BclI	TGATCA	2 cut(s)	121, 247
BglI	GCCNNNNNGGC	1 cut(s)	164
BisI	GCNGC	4 cut(s)	172, 177, 186, 302
BlsI	GCNGC	4 cut(s)	173, 178, 187, 303
Bme18I	GGWCC	1 cut(s)	151
BmeRI	GACNNNNNGTC	1 cut(s)	82
BmeT110I	CYCGRG	1 cut(s)	47
BmgT120I	GGNCC	2 cut(s)	151, 205
BpiI	GAAGAC	2 cut(s)	78, 87
BsaJI	CCNNGG	1 cut(s)	180
BsaWI	WCCGGW	1 cut(s)	127
BseDI	CCNNGG	1 cut(s)	180
BseSI	GKGCMC	1 cut(s)	242
BseXI	GCAGC	4 cut(s)	158, 188, 197, 313
BseYI	CCCAGC	1 cut(s)	188
Bsh1236I	CGCG	1 cut(s)	60
BshFI	GGCC	1 cut(s)	206
BsiHKCI	CYCGRG	1 cut(s)	47
BsiSI	CCGG	2 cut(s)	5, 128
BsnI	GGCC	1 cut(s)	206
BsoBI	CYCGRG	1 cut(s)	47
Bsp1286I	GDGCHC	1 cut(s)	242
Bsp143I	GATC	5 cut(s)	24, 114, 121, 247, 282
BspACI	CCGC	5 cut(s)	20, 66, 149, 242, 260
BspANI	GGCC	1 cut(s)	206
BspFNI	CGCG	1 cut(s)	60
BspPI	GGATC	1 cut(s)	109
BsrBI	CCGCTC	1 cut(s)	68
BssECI	CCNNGG	1 cut(s)	180
BssMI	GATC	5 cut(s)	24, 114, 121, 247, 282
BssT1I	CCWWGG	1 cut(s)	180
BstC8I	GCNNGC	3 cut(s)	58, 169, 242
BstEII	GGTNACC	1 cut(s)	262
BstFNI	CGCG	1 cut(s)	60
BstHHI	GCGC	2 cut(s)	62, 176
BstKTI	GATC	5 cut(s)	27, 117, 124, 250, 285
BstMBI	GATC	5 cut(s)	24, 114, 121, 247, 282
BstMWI	GCNNNNNNNGC	7 cut(s)	17, 146, 155, 164, 173, 182, 185
BstPI	GGTNACC	1 cut(s)	262
BstSLI	GKGCMC	1 cut(s)	242
BstUI	CGCG	1 cut(s)	60
BstV1I	GCAGC	4 cut(s)	158, 188, 197, 313
BstV2I	GAAGAC	2 cut(s)	78, 87
BstX2I	RGATCY	1 cut(s)	114
BstYI	RGATCY	1 cut(s)	114
BsuRI	GGCC	1 cut(s)	206
Cac8I	GCNNGC	3 cut(s)	58, 169, 242
CfoI	GCGC	2 cut(s)	62, 176
Cfr13I	GGNCC	2 cut(s)	151, 205
Csp6I	GTAC	1 cut(s)	52
CspCI	CAANNNNNGTGG	2 cut(s)	52, 87
CviJI	RGCY	9 cut(s)	11, 158, 171, 179, 188, 206, 271, 304, 321
CviKI_1	RGCY	9 cut(s)	11, 158, 171, 179, 188, 206, 271, 304, 321
CviQI	GTAC	1 cut(s)	52
DpnI	GATC	5 cut(s)	26, 116, 123, 249, 284
DpnII	GATC	5 cut(s)	24, 114, 121, 247, 282
DriI	GACNNNNNGTC	1 cut(s)	82
Eam1105I	GACNNNNNGTC	1 cut(s)	82
EciI	GGCGGA	2 cut(s)	35, 164
Eco130I	CCWWGG	1 cut(s)	180
Eco47I	GGWCC	1 cut(s)	151
Eco88I	CYCGRG	1 cut(s)	47
Eco91I	GGTNACC	1 cut(s)	262
EcoO109I	RGGNCCY	1 cut(s)	205
EcoO65I	GGTNACC	1 cut(s)	262
EcoT14I	CCWWGG	1 cut(s)	180
ErhI	CCWWGG	1 cut(s)	180
FaiI	YATR	2 cut(s)	236, 309
FauI	CCCGC	1 cut(s)	249
FbaI	TGATCA	2 cut(s)	121, 247
FblI	GTMKAC	1 cut(s)	75
Fnu4HI	GCNGC	4 cut(s)	172, 177, 186, 302
Fsp4HI	GCNGC	4 cut(s)	172, 177, 186, 302
FspI	TGCGCA	1 cut(s)	175
GlaI	GCGC	2 cut(s)	61, 175
GluI	GCNGC	4 cut(s)	172, 177, 186, 302
GsaI	CCCAGC	1 cut(s)	192
HaeIII	GGCC	1 cut(s)	206
HapII	CCGG	2 cut(s)	5, 128
HhaI	GCGC	2 cut(s)	62, 176
Hin6I	GCGC	2 cut(s)	60, 174
HinP1I	GCGC	2 cut(s)	60, 174
HincII	GTYRAC	1 cut(s)	76
HindII	GTYRAC	1 cut(s)	76
HinfI	GANTC	1 cut(s)	77
HpaII	CCGG	2 cut(s)	5, 128
HphI	GGTGA	1 cut(s)	274
Hpy166II	GTNNAC	2 cut(s)	76, 315
Hpy188I	TCNGA	2 cut(s)	219, 252
Hpy188III	TCNNGA	1 cut(s)	47
Hpy8I	GTNNAC	2 cut(s)	76, 315
Hpy99I	CGWCG	2 cut(s)	103, 203
HpyAV	CCTTC	1 cut(s)	218
HpyCH4V	TGCA	2 cut(s)	42, 140
HpyF10VI	GCNNNNNNNGC	7 cut(s)	17, 146, 155, 164, 173, 182, 185
HspAI	GCGC	2 cut(s)	60, 174
Ksp22I	TGATCA	2 cut(s)	121, 247
Kzo9I	GATC	5 cut(s)	24, 114, 121, 247, 282
LmnI	GCTCC	2 cut(s)	276, 309
LpnPI	CCDG	6 cut(s)	18, 132, 141, 153, 174, 258
Lsp1109I	GCAGC	4 cut(s)	158, 188, 197, 313
MaeIII	GTNAC	1 cut(s)	262
MalI	GATC	5 cut(s)	26, 116, 123, 249, 284
MbiI	CCGCTC	1 cut(s)	68
MboI	GATC	5 cut(s)	24, 114, 121, 247, 282
MboII	GAAGA	2 cut(s)	78, 87
MflI	RGATCY	1 cut(s)	114
MhlI	GDGCHC	1 cut(s)	242
MlyI	GAGTC	1 cut(s)	71
MnlI	CCTC	2 cut(s)	196, 265
MspA1I	CMGCKG	2 cut(s)	188, 321
MspI	CCGG	2 cut(s)	5, 128
MvnI	CGCG	1 cut(s)	60
MwoI	GCNNNNNNNGC	7 cut(s)	17, 146, 155, 164, 173, 182, 185
NdeII	GATC	5 cut(s)	24, 114, 121, 247, 282
NmeAIII	GCCGAG	1 cut(s)	277
NmuCI	GTSAC	1 cut(s)	262
NsbI	TGCGCA	1 cut(s)	175
PaeR7I	CTCGAG	1 cut(s)	47
PkrI	GCNGC	4 cut(s)	173, 178, 187, 303
PleI	GAGTC	1 cut(s)	71
PpsI	GAGTC	1 cut(s)	71
PspEI	GGTNACC	1 cut(s)	262
PspFI	CCCAGC	1 cut(s)	188
PspPI	GGNCC	2 cut(s)	151, 205
PsuI	RGATCY	1 cut(s)	114
PvuII	CAGCTG	2 cut(s)	188, 321
RsaI	GTAC	1 cut(s)	53
RsaNI	GTAC	1 cut(s)	52
SalI	GTCGAC	1 cut(s)	74
SatI	GCNGC	4 cut(s)	172, 177, 186, 302
Sau3AI	GATC	5 cut(s)	24, 114, 121, 247, 282
Sau96I	GGNCC	2 cut(s)	151, 205
SchI	GAGTC	1 cut(s)	71
SduI	GDGCHC	1 cut(s)	242
SetI	ASST	6 cut(s)	13, 190, 257, 273, 306, 323
Sfr274I	CTCGAG	1 cut(s)	47
SinI	GGWCC	1 cut(s)	151
SlaI	CTCGAG	1 cut(s)	47
SmlI	CTYRAG	1 cut(s)	47
SmoI	CTYRAG	1 cut(s)	47
SsiI	CCGC	5 cut(s)	20, 66, 149, 242, 260
StyI	CCWWGG	1 cut(s)	180
TaqI	TCGA	4 cut(s)	48, 75, 98, 198
TseFI	GTSAC	1 cut(s)	262
TseI	GCWGC	4 cut(s)	171, 176, 185, 301
Tsp45I	GTSAC	1 cut(s)	262
TspGWI	ACGGA	1 cut(s)	72
VpaK11BI	GGWCC	1 cut(s)	151
XhoI	CTCGAG	1 cut(s)	47
XmiI	GTMKAC	1 cut(s)	75

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.