ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| DUF8204 | PF26631 | 14 - 74 | 6.5e-23 | Domain of unknown function (DUF8204) |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 2 cut(s) | 188, 237 |
| AclWI | GGATC | 1 cut(s) | 164 |
| AcsI | RAATTY | 1 cut(s) | 394 |
| AfaI | GTAC | 2 cut(s) | 122, 341 |
| AgsI | TTSAA | 3 cut(s) | 90, 165, 327 |
| AjnI | CCWGG | 2 cut(s) | 243, 347 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 270, 302 |
| AluBI | AGCT | 3 cut(s) | 57, 86, 312 |
| AluI | AGCT | 3 cut(s) | 57, 86, 312 |
| Alw26I | GTCTC | 1 cut(s) | 273 |
| AlwI | GGATC | 1 cut(s) | 164 |
| AoxI | GGCC | 1 cut(s) | 367 |
| ApeKI | GCWGC | 1 cut(s) | 102 |
| ApoI | RAATTY | 1 cut(s) | 394 |
| AseI | ATTAAT | 1 cut(s) | 8 |
| AspS9I | GGNCC | 1 cut(s) | 453 |
| AvaII | GGWCC | 1 cut(s) | 453 |
| BbvI | GCAGC | 1 cut(s) | 114 |
| BccI | CCATC | 1 cut(s) | 15 |
| BciT130I | CCWGG | 2 cut(s) | 245, 349 |
| BcoDI | GTCTC | 1 cut(s) | 273 |
| BfaI | CTAG | 2 cut(s) | 371, 390 |
| BisI | GCNGC | 1 cut(s) | 103 |
| BlsI | GCNGC | 1 cut(s) | 104 |
| Bme1390I | CCNGG | 2 cut(s) | 245, 349 |
| Bme18I | GGWCC | 1 cut(s) | 453 |
| BmgT120I | GGNCC | 1 cut(s) | 453 |
| BmrFI | CCNGG | 2 cut(s) | 245, 349 |
| BmsI | GCATC | 1 cut(s) | 386 |
| BpuEI | CTTGAG | 1 cut(s) | 233 |
| BsaWI | WCCGGW | 1 cut(s) | 329 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 270, 300 |
| BseBI | CCWGG | 2 cut(s) | 245, 349 |
| BseXI | GCAGC | 1 cut(s) | 114 |
| BseYI | CCCAGC | 1 cut(s) | 53 |
| Bsh1285I | CGRYCG | 1 cut(s) | 100 |
| BshFI | GGCC | 1 cut(s) | 369 |
| BsiEI | CGRYCG | 1 cut(s) | 100 |
| BsiSI | CCGG | 1 cut(s) | 330 |
| BsmAI | GTCTC | 1 cut(s) | 273 |
| BsnI | GGCC | 1 cut(s) | 369 |
| Bsp143I | GATC | 2 cut(s) | 97, 169 |
| BspACI | CCGC | 2 cut(s) | 188, 237 |
| BspANI | GGCC | 1 cut(s) | 369 |
| BspPI | GGATC | 1 cut(s) | 164 |
| BssMI | GATC | 2 cut(s) | 97, 169 |
| Bst2UI | CCWGG | 2 cut(s) | 245, 349 |
| BstC8I | GCNNGC | 1 cut(s) | 367 |
| BstDEI | CTNAG | 1 cut(s) | 148 |
| BstKTI | GATC | 2 cut(s) | 100, 172 |
| BstMAI | GTCTC | 1 cut(s) | 273 |
| BstMBI | GATC | 2 cut(s) | 97, 169 |
| BstMCI | CGRYCG | 1 cut(s) | 100 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 92, 245 |
| BstNI | CCWGG | 2 cut(s) | 245, 349 |
| BstSCI | CCNGG | 2 cut(s) | 243, 347 |
| BstV1I | GCAGC | 1 cut(s) | 114 |
| BsuRI | GGCC | 1 cut(s) | 369 |
| Cac8I | GCNNGC | 1 cut(s) | 367 |
| Cfr13I | GGNCC | 1 cut(s) | 453 |
| CsiI | ACCWGGT | 1 cut(s) | 347 |
| Csp6I | GTAC | 2 cut(s) | 121, 340 |
| CviAII | CATG | 1 cut(s) | 251 |
| CviJI | RGCY | 7 cut(s) | 57, 86, 95, 105, 248, 312, 369 |
| CviKI_1 | RGCY | 7 cut(s) | 57, 86, 95, 105, 248, 312, 369 |
| CviQI | GTAC | 2 cut(s) | 121, 340 |
| DdeI | CTNAG | 1 cut(s) | 148 |
| DpnI | GATC | 2 cut(s) | 99, 171 |
| DpnII | GATC | 2 cut(s) | 97, 169 |
| DraI | TTTAAA | 1 cut(s) | 399 |
| EciI | GGCGGA | 1 cut(s) | 203 |
| Eco47I | GGWCC | 1 cut(s) | 453 |
| EcoRII | CCWGG | 2 cut(s) | 243, 347 |
| FaeI | CATG | 1 cut(s) | 254 |
| FatI | CATG | 1 cut(s) | 250 |
| FauI | CCCGC | 1 cut(s) | 244 |
| Fnu4HI | GCNGC | 1 cut(s) | 103 |
| Fsp4HI | GCNGC | 1 cut(s) | 103 |
| FspBI | CTAG | 2 cut(s) | 371, 390 |
| GluI | GCNGC | 1 cut(s) | 103 |
| GsaI | CCCAGC | 1 cut(s) | 57 |
| HaeIII | GGCC | 1 cut(s) | 369 |
| HapII | CCGG | 1 cut(s) | 330 |
| Hin1II | CATG | 1 cut(s) | 254 |
| HindIII | AAGCTT | 1 cut(s) | 84 |
| HinfI | GANTC | 1 cut(s) | 161 |
| HpaII | CCGG | 1 cut(s) | 330 |
| Hpy188I | TCNGA | 1 cut(s) | 449 |
| Hpy188III | TCNNGA | 1 cut(s) | 212 |
| HpyAV | CCTTC | 1 cut(s) | 444 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 92, 245 |
| HpyF3I | CTNAG | 1 cut(s) | 148 |
| Hsp92II | CATG | 1 cut(s) | 254 |
| Kzo9I | GATC | 2 cut(s) | 97, 169 |
| LmnI | GCTCC | 1 cut(s) | 259 |
| Lsp1109I | GCAGC | 1 cut(s) | 114 |
| LweI | GCATC | 1 cut(s) | 386 |
| MabI | ACCWGGT | 1 cut(s) | 347 |
| MaeI | CTAG | 2 cut(s) | 371, 390 |
| MaeIII | GTNAC | 2 cut(s) | 31, 134 |
| MalI | GATC | 2 cut(s) | 99, 171 |
| MboI | GATC | 2 cut(s) | 97, 169 |
| MluCI | AATT | 2 cut(s) | 191, 394 |
| MmeI | TCCRAC | 1 cut(s) | 60 |
| MnlI | CCTC | 4 cut(s) | 303, 309, 315, 351 |
| MseI | TTAA | 4 cut(s) | 8, 117, 354, 398 |
| MspI | CCGG | 1 cut(s) | 330 |
| MspR9I | CCNGG | 2 cut(s) | 245, 349 |
| MvaI | CCWGG | 2 cut(s) | 245, 349 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 92, 245 |
| NdeII | GATC | 2 cut(s) | 97, 169 |
| NlaIII | CATG | 1 cut(s) | 254 |
| PfeI | GAWTC | 1 cut(s) | 161 |
| PkrI | GCNGC | 1 cut(s) | 104 |
| Ple19I | CGATCG | 1 cut(s) | 100 |
| PshBI | ATTAAT | 1 cut(s) | 8 |
| Psp6I | CCWGG | 2 cut(s) | 243, 347 |
| PspFI | CCCAGC | 1 cut(s) | 53 |
| PspGI | CCWGG | 2 cut(s) | 243, 347 |
| PspPI | GGNCC | 1 cut(s) | 453 |
| PvuI | CGATCG | 1 cut(s) | 100 |
| RsaI | GTAC | 2 cut(s) | 122, 341 |
| RsaNI | GTAC | 2 cut(s) | 121, 340 |
| SaqAI | TTAA | 4 cut(s) | 8, 117, 354, 398 |
| SatI | GCNGC | 1 cut(s) | 103 |
| Sau3AI | GATC | 2 cut(s) | 97, 169 |
| Sau96I | GGNCC | 1 cut(s) | 453 |
| ScrFI | CCNGG | 2 cut(s) | 245, 349 |
| SexAI | ACCWGGT | 1 cut(s) | 347 |
| SfaNI | GCATC | 1 cut(s) | 386 |
| SinI | GGWCC | 1 cut(s) | 453 |
| SmlI | CTYRAG | 1 cut(s) | 212 |
| SmoI | CTYRAG | 1 cut(s) | 212 |
| Sse9I | AATT | 2 cut(s) | 191, 394 |
| SsiI | CCGC | 2 cut(s) | 188, 237 |
| SspMI | CTAG | 2 cut(s) | 371, 390 |
| StyD4I | CCNGG | 2 cut(s) | 243, 347 |
| TaqI | TCGA | 2 cut(s) | 289, 307 |
| TasI | AATT | 2 cut(s) | 191, 394 |
| TfiI | GAWTC | 1 cut(s) | 161 |
| Tru1I | TTAA | 4 cut(s) | 8, 117, 354, 398 |
| Tru9I | TTAA | 4 cut(s) | 8, 117, 354, 398 |
| TseI | GCWGC | 1 cut(s) | 102 |
| TspDTI | ATGAA | 2 cut(s) | 30, 37 |
| TspGWI | ACGGA | 2 cut(s) | 89, 125 |
| VpaK11BI | GGWCC | 1 cut(s) | 453 |
| VspI | ATTAAT | 1 cut(s) | 8 |
| XapI | RAATTY | 1 cut(s) | 394 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 61 |
| XspI | CTAG | 2 cut(s) | 371, 390 |