ribonuclease H protein
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccBSI | CCGCTC | 2 cut(s) | 23, 297 |
| AciI | CCGC | 6 cut(s) | 21, 61, 73, 104, 224, 295 |
| AclWI | GGATC | 5 cut(s) | 91, 159, 164, 175, 232 |
| AcoI | YGGCCR | 1 cut(s) | 225 |
| AfaI | GTAC | 1 cut(s) | 32 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 51, 261 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 102, 134 |
| AluBI | AGCT | 2 cut(s) | 13, 206 |
| AluI | AGCT | 2 cut(s) | 13, 206 |
| AlwI | GGATC | 5 cut(s) | 91, 159, 164, 175, 232 |
| Ama87I | CYCGRG | 1 cut(s) | 24 |
| AoxI | GGCC | 1 cut(s) | 225 |
| ApeKI | GCWGC | 1 cut(s) | 13 |
| AsuC2I | CCSGG | 1 cut(s) | 149 |
| AsuHPI | GGTGA | 3 cut(s) | 88, 238, 319 |
| AvaI | CYCGRG | 1 cut(s) | 24 |
| BccI | CCATC | 1 cut(s) | 209 |
| BciVI | GTATCC | 1 cut(s) | 262 |
| BcnI | CCSGG | 1 cut(s) | 149 |
| BfaI | CTAG | 1 cut(s) | 203 |
| BfuI | GTATCC | 1 cut(s) | 262 |
| BisI | GCNGC | 2 cut(s) | 14, 225 |
| BlsI | GCNGC | 2 cut(s) | 15, 226 |
| Bme1390I | CCNGG | 1 cut(s) | 149 |
| BmeT110I | CYCGRG | 1 cut(s) | 24 |
| BmrFI | CCNGG | 1 cut(s) | 149 |
| BpuMI | CCSGG | 1 cut(s) | 149 |
| BsaJI | CCNNGG | 3 cut(s) | 173, 228, 331 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 51, 261 |
| Bse1I | ACTGG | 1 cut(s) | 266 |
| Bse3DI | GCAATG | 1 cut(s) | 70 |
| BseDI | CCNNGG | 3 cut(s) | 173, 228, 331 |
| BseGI | GGATG | 1 cut(s) | 60 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 51, 261 |
| BseMI | GCAATG | 1 cut(s) | 70 |
| BseNI | ACTGG | 1 cut(s) | 266 |
| BshFI | GGCC | 1 cut(s) | 227 |
| BsiHKCI | CYCGRG | 1 cut(s) | 24 |
| BsiSI | CCGG | 1 cut(s) | 148 |
| BslFI | GGGAC | 1 cut(s) | 123 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 51, 261 |
| BsmFI | GGGAC | 1 cut(s) | 123 |
| BsnI | GGCC | 1 cut(s) | 227 |
| BsoBI | CYCGRG | 1 cut(s) | 24 |
| Bsp143I | GATC | 5 cut(s) | 83, 151, 156, 167, 237 |
| Bsp19I | CCATGG | 2 cut(s) | 173, 228 |
| BspACI | CCGC | 6 cut(s) | 21, 61, 73, 104, 224, 295 |
| BspANI | GGCC | 1 cut(s) | 227 |
| BspPI | GGATC | 5 cut(s) | 91, 159, 164, 175, 232 |
| BsrBI | CCGCTC | 2 cut(s) | 23, 297 |
| BsrDI | GCAATG | 1 cut(s) | 70 |
| BsrI | ACTGG | 1 cut(s) | 266 |
| BssECI | CCNNGG | 3 cut(s) | 173, 228, 331 |
| BssMI | GATC | 5 cut(s) | 83, 151, 156, 167, 237 |
| BssT1I | CCWWGG | 3 cut(s) | 173, 228, 331 |
| Bst4CI | ACNGT | 1 cut(s) | 250 |
| BstDEI | CTNAG | 1 cut(s) | 89 |
| BstDSI | CCRYGG | 2 cut(s) | 173, 228 |
| BstF5I | GGATG | 1 cut(s) | 60 |
| BstKTI | GATC | 5 cut(s) | 86, 154, 159, 170, 240 |
| BstMBI | GATC | 5 cut(s) | 83, 151, 156, 167, 237 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 197 |
| BstSCI | CCNGG | 1 cut(s) | 147 |
| BstX2I | RGATCY | 2 cut(s) | 156, 167 |
| BstYI | RGATCY | 2 cut(s) | 156, 167 |
| BsuI | GTATCC | 1 cut(s) | 262 |
| BsuRI | GGCC | 1 cut(s) | 227 |
| BtgI | CCRYGG | 2 cut(s) | 173, 228 |
| BtsCI | GGATG | 1 cut(s) | 60 |
| BtsI | GCAGTG | 1 cut(s) | 269 |
| BtsIMutI | CAGTG | 1 cut(s) | 269 |
| CseI | GACGC | 1 cut(s) | 146 |
| Csp6I | GTAC | 1 cut(s) | 31 |
| CviAII | CATG | 3 cut(s) | 69, 174, 229 |
| CviJI | RGCY | 3 cut(s) | 13, 206, 227 |
| CviKI_1 | RGCY | 3 cut(s) | 13, 206, 227 |
| CviQI | GTAC | 1 cut(s) | 31 |
| DdeI | CTNAG | 1 cut(s) | 89 |
| DpnI | GATC | 5 cut(s) | 85, 153, 158, 169, 239 |
| DpnII | GATC | 5 cut(s) | 83, 151, 156, 167, 237 |
| EaeI | YGGCCR | 1 cut(s) | 225 |
| Eco130I | CCWWGG | 3 cut(s) | 173, 228, 331 |
| Eco88I | CYCGRG | 1 cut(s) | 24 |
| EcoT14I | CCWWGG | 3 cut(s) | 173, 228, 331 |
| EcoT22I | ATGCAT | 1 cut(s) | 70 |
| ErhI | CCWWGG | 3 cut(s) | 173, 228, 331 |
| FaeI | CATG | 3 cut(s) | 72, 177, 232 |
| FaiI | YATR | 7 cut(s) | 50, 70, 175, 183, 213, 230, 317 |
| FaqI | GGGAC | 1 cut(s) | 123 |
| FatI | CATG | 3 cut(s) | 68, 173, 228 |
| FauI | CCCGC | 1 cut(s) | 66 |
| Fnu4HI | GCNGC | 2 cut(s) | 14, 225 |
| FokI | GGATG | 1 cut(s) | 67 |
| Fsp4HI | GCNGC | 2 cut(s) | 14, 225 |
| FspBI | CTAG | 1 cut(s) | 203 |
| GluI | GCNGC | 2 cut(s) | 14, 225 |
| HaeIII | GGCC | 1 cut(s) | 227 |
| HapII | CCGG | 1 cut(s) | 148 |
| HgaI | GACGC | 1 cut(s) | 146 |
| Hin1II | CATG | 3 cut(s) | 72, 177, 232 |
| HinfI | GANTC | 3 cut(s) | 37, 233, 279 |
| HpaII | CCGG | 1 cut(s) | 148 |
| HphI | GGTGA | 3 cut(s) | 88, 238, 319 |
| Hpy166II | GTNNAC | 1 cut(s) | 327 |
| Hpy188I | TCNGA | 4 cut(s) | 136, 156, 195, 301 |
| Hpy188III | TCNNGA | 2 cut(s) | 26, 160 |
| Hpy8I | GTNNAC | 1 cut(s) | 327 |
| HpyAV | CCTTC | 1 cut(s) | 157 |
| HpyCH4III | ACNGT | 1 cut(s) | 250 |
| HpyCH4V | TGCA | 2 cut(s) | 68, 274 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 197 |
| HpyF3I | CTNAG | 1 cut(s) | 89 |
| Hsp92II | CATG | 3 cut(s) | 72, 177, 232 |
| Kzo9I | GATC | 5 cut(s) | 83, 151, 156, 167, 237 |
| LmnI | GCTCC | 2 cut(s) | 47, 196 |
| LpnPI | CCDG | 4 cut(s) | 145, 161, 247, 300 |
| MaeI | CTAG | 1 cut(s) | 203 |
| MalI | GATC | 5 cut(s) | 85, 153, 158, 169, 239 |
| MbiI | CCGCTC | 2 cut(s) | 23, 297 |
| MboI | GATC | 5 cut(s) | 83, 151, 156, 167, 237 |
| MflI | RGATCY | 2 cut(s) | 156, 167 |
| MlyI | GAGTC | 2 cut(s) | 31, 227 |
| MmeI | TCCRAC | 1 cut(s) | 114 |
| MnlI | CCTC | 6 cut(s) | 91, 100, 108, 265, 294, 297 |
| Mph1103I | ATGCAT | 1 cut(s) | 70 |
| MspI | CCGG | 1 cut(s) | 148 |
| MspR9I | CCNGG | 1 cut(s) | 149 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 197 |
| NciI | CCSGG | 1 cut(s) | 149 |
| NcoI | CCATGG | 2 cut(s) | 173, 228 |
| NdeII | GATC | 5 cut(s) | 83, 151, 156, 167, 237 |
| NlaIII | CATG | 3 cut(s) | 72, 177, 232 |
| NsiI | ATGCAT | 1 cut(s) | 70 |
| PfeI | GAWTC | 1 cut(s) | 279 |
| PkrI | GCNGC | 2 cut(s) | 15, 226 |
| PleI | GAGTC | 2 cut(s) | 31, 227 |
| PpsI | GAGTC | 2 cut(s) | 31, 227 |
| PsuI | RGATCY | 2 cut(s) | 156, 167 |
| RsaI | GTAC | 1 cut(s) | 32 |
| RsaNI | GTAC | 1 cut(s) | 31 |
| SatI | GCNGC | 2 cut(s) | 14, 225 |
| Sau3AI | GATC | 5 cut(s) | 83, 151, 156, 167, 237 |
| SchI | GAGTC | 2 cut(s) | 31, 227 |
| ScrFI | CCNGG | 1 cut(s) | 149 |
| SetI | ASST | 2 cut(s) | 15, 208 |
| SsiI | CCGC | 6 cut(s) | 21, 61, 73, 104, 224, 295 |
| SspMI | CTAG | 1 cut(s) | 203 |
| StyD4I | CCNGG | 1 cut(s) | 147 |
| StyI | CCWWGG | 3 cut(s) | 173, 228, 331 |
| TaaI | ACNGT | 1 cut(s) | 250 |
| TaqI | TCGA | 1 cut(s) | 236 |
| TatI | WGTACW | 1 cut(s) | 30 |
| TauI | GCSGC | 1 cut(s) | 227 |
| TfiI | GAWTC | 1 cut(s) | 279 |
| TscAI | CASTG | 1 cut(s) | 276 |
| TseI | GCWGC | 1 cut(s) | 13 |
| TspRI | CASTG | 1 cut(s) | 276 |
| XspI | CTAG | 1 cut(s) | 203 |
| Zsp2I | ATGCAT | 1 cut(s) | 70 |