Rmu_ssc0000044.1_g000014

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000044.1
OG0000187
Physical Location & Seq
Reverse (-)
34828 .. 37046
2219 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000044.1_g000014.1.cds

Sequence Viewer

Length: 810 bp
atggtaattacctattcgaaactatctggaaatctagcatccacgagcggcggagccgtggtggctcacgcgctagcggaggcgcgtgctgctactgtggttggtgctagaggttgggattcttggggttgttgtaaattattcgatgccatcggcggtggtgtgtacgatgactttctggcgtctgttggggtagctgcctttgggaagttgggtttcccggtgatggcagagagaaggagagcggaagagagaggtcgggtcgagtcatggcttcgatttctcttgggtttaggtcacattttggtggaggaaacgaaagggcagagggtgttattcactctgtcggatctgtctgatctagttcggatatggcggggtgccccatgggggtataatcacacgctggtggctctagctttgtatgatggtatcataccggtggagaaagtgcccctagccatggcatcatattggataactcttcagggaataccaccatcgttcctgtctgaaagtgtcatgaccatgatcggctacacgttgggggattttcaggaaattgataagaatgctaagaagactgggaaacaccggattagggttgagataccgctgaataaaccattgcctttcaagcagtggtatttggtggaagatgaagttgagtttctctgtcaattctgttatgacaagcttttcgagagatgctctgtatgtggattagtcacacatgtgggtttgccgtgctccgaaccggcgctggatgaagacgatgatgaagccgagagaattgttttgggatcctag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00230 ko00670 ko01100 ko01110 ko01130 ko01523 map00230 map00670 map01100 map01110 map01130 map01523
Pfam Domains
Protein Families
DDE_Tnp_1_7 DUF4283 RVT_1 RVT_3 zf-CCHC_4 zf-RVT

Protein Analysis

269

Amino Acids

29.66

Weight (kDa)

5.34

Isoelectric Point (pI)

31.1

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000187)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g20170 FvH4_4g06831
rosa_chinensis RchiOBHm_Chr1g0321991 RchiOBHm_Chr2g0161811
rosa_laevigata RLG00000015375 RLG00000018377
rosa_multiflora Rmu_co8011754.1_g000001 Rmu_co8019986.1_g000001 Rmu_co8067766.1_g000001 Rmu_co8156128.1_g000001 Rmu_co8219154.1_g000003 Rmu_co8297235.1_g000001 Rmu_co8345223.1_g000001 Rmu_co8364775.1_g000001 Rmu_co8465075.1_g000001 Rmu_sc0000007.1_g000002 Rmu_sc0000054.1_g000015 Rmu_sc0000054.1_g000023 Rmu_sc0000145.1_g000010 Rmu_sc0000166.1_g000006 Rmu_sc0000218.1_g000012 Rmu_sc0000339.1_g000008 Rmu_sc0000342.1_g000015 Rmu_sc0000464.1_g000008 Rmu_sc0000620.1_g000003 Rmu_sc0000638.1_g000017 Rmu_sc0000890.1_g000007 Rmu_sc0000894.1_g000024 Rmu_sc0000909.1_g000010 Rmu_sc0000928.1_g000020 Rmu_sc0000977.1_g000007 Rmu_sc0001022.1_g000003 Rmu_sc0001035.1_g000037 Rmu_sc0001060.1_g000008 Rmu_sc0001168.1_g000005 Rmu_sc0001173.1_g000022 Rmu_sc0001179.1_g000016 Rmu_sc0001408.1_g000003 Rmu_sc0001455.1_g000005 Rmu_sc0001484.1_g000008 Rmu_sc0001585.1_g000010 Rmu_sc0001702.1_g000030 Rmu_sc0001755.1_g000063 Rmu_sc0001903.1_g000009 Rmu_sc0002099.1_g000001 Rmu_sc0002142.1_g000012 Rmu_sc0002158.1_g000014 Rmu_sc0002307.1_g000009 Rmu_sc0002358.1_g000013 Rmu_sc0002421.1_g000002 Rmu_sc0002426.1_g000003 Rmu_sc0002438.1_g000001 Rmu_sc0002461.1_g000001 Rmu_sc0002508.1_g000003 Rmu_sc0002532.1_g000056 Rmu_sc0002583.1_g000002 Rmu_sc0002927.1_g000033 Rmu_sc0003033.1_g000040 Rmu_sc0003271.1_g000006 Rmu_sc0003381.1_g000006 Rmu_sc0003507.1_g000007 Rmu_sc0003578.1_g000003 Rmu_sc0003693.1_g000004 Rmu_sc0003693.1_g000005 Rmu_sc0003704.1_g000003 Rmu_sc0003840.1_g000002 Rmu_sc0004084.1_g000026 Rmu_sc0004193.1_g000007 Rmu_sc0004234.1_g000033 Rmu_sc0004235.1_g000025 Rmu_sc0004435.1_g000006 Rmu_sc0004727.1_g000003 Rmu_sc0004741.1_g000001 Rmu_sc0004926.1_g000004 Rmu_sc0005365.1_g000001 Rmu_sc0005392.1_g000007 Rmu_sc0005415.1_g000001 Rmu_sc0005539.1_g000007 Rmu_sc0005708.1_g000017 Rmu_sc0006317.1_g000007 Rmu_sc0006453.1_g000054 Rmu_sc0006536.1_g000004 Rmu_sc0006740.1_g000022 Rmu_sc0006763.1_g000012 Rmu_sc0007115.1_g000002 Rmu_sc0007115.1_g000010 Rmu_sc0007129.1_g000017 Rmu_sc0007131.1_g000010 Rmu_sc0008373.1_g000008 Rmu_sc0009005.1_g000008 Rmu_sc0009252.1_g000007 Rmu_sc0009599.1_g000022 Rmu_sc0009785.1_g000027 Rmu_sc0009891.1_g000003 Rmu_sc0010099.1_g000010 Rmu_sc0010266.1_g000008 Rmu_sc0010334.1_g000003 Rmu_sc0010381.1_g000001 Rmu_sc0010496.1_g000003 Rmu_sc0010496.1_g000004 Rmu_sc0010546.1_g000003 Rmu_sc0011482.1_g000006 Rmu_sc0011875.1_g000010 Rmu_sc0011917.1_g000006 Rmu_sc0012293.1_g000004 Rmu_sc0012847.1_g000003 Rmu_sc0013773.1_g000001 Rmu_sc0016060.1_g000003 Rmu_sc0016170.1_g000013 Rmu_sc0016393.1_g000002 Rmu_sc0017589.1_g000001 Rmu_sc0017786.1_g000005 Rmu_sc0018326.1_g000002 Rmu_sc0020760.1_g000001 Rmu_sc0021262.1_g000003 Rmu_sc0023851.1_g000002 Rmu_sc0024044.1_g000001 Rmu_sc0026820.1_g000001 Rmu_sc0032306.1_g000001 Rmu_sc0035666.1_g000001 Rmu_sc0036881.1_g000001 Rmu_sc0037030.1_g000001 Rmu_sc0037158.1_g000001 Rmu_ssc0000016.1_g000002 Rmu_ssc0000044.1_g000012 Rmu_ssc0000044.1_g000014 Rmu_ssc0000050.1_g000064 Rmu_ssc0000064.1_g000022 Rmu_ssc0000154.1_g000037 Rmu_ssc0000178.1_g000013 Rmu_ssc0000217.1_g000022 Rmu_ssc0000392.1_g000004
rosa_roxburghii Rroxscaffold_3G00242000 Rroxscaffold_3G00242530 Rroxscaffold_6G00406010
rosa_rugosa Rorug01G0062000 Rorug02G0224000 Rorug02G0262900 Rorug02G0263000 Rorug02G0358900 Rorug02G0360500 Rorug02G0378500.1 Rorug02G0378600 Rorug02G0394700 Rorug03G0122900 Rorug03G0254600 Rorug03G0254700 Rorug03G0254800 Rorug04G0042200.1 Rorug04G0378100 Rorug05G0053400 Rorug05G0238600 Rorug05G0364500 Rorug05G0562000 Rorug06G0089300 Rorug06G0089400 Rorug06G0145700 Rorug07G0111600 Rorug07G0229500.1 Rorug07G0287600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 380
AccBSI CCGCTC 2 cut(s) 48, 245
AccII CGCG 2 cut(s) 71, 85
AciI CCGC 7 cut(s) 48, 51, 77, 156, 245, 376, 614
AclWI GGATC 2 cut(s) 357, 798
AcuI CTGAAG 1 cut(s) 470
AcyI GRCGYC 1 cut(s) 182
AfaI GTAC 1 cut(s) 167
AfiI CCNNNNNNNGG 4 cut(s) 226, 390, 463, 601
AflIII ACRYGT 2 cut(s) 540, 733
AgeI ACCGGT 1 cut(s) 439
AgsI TTSAA 1 cut(s) 637
AleI CACNNNNGTG 2 cut(s) 407, 734
AluBI AGCT 3 cut(s) 197, 419, 697
AluI AGCT 3 cut(s) 197, 419, 697
Alw21I GWGCWC 1 cut(s) 752
AlwI GGATC 2 cut(s) 357, 798
ApeKI GCWGC 2 cut(s) 89, 197
ArsI GACNNNNNNTTYG 2 cut(s) 683, 715
AsiGI ACCGGT 1 cut(s) 439
AspLEI GCGC 3 cut(s) 73, 85, 763
AsuC2I CCSGG 1 cut(s) 221
AsuHPI GGTGA 1 cut(s) 235
AsuII TTCGAA 1 cut(s) 17
AsuNHI GCTAGC 1 cut(s) 73
BaeGI GKGCMC 2 cut(s) 385, 456
BamHI GGATCC 1 cut(s) 803
BanI GGYRCC 1 cut(s) 380
BauI CACGAG 1 cut(s) 43
BbsI GAAGAC 2 cut(s) 587, 777
Bbv12I GWGCWC 1 cut(s) 752
BbvI GCAGC 2 cut(s) 76, 184
BccI CCATC 4 cut(s) 158, 220, 422, 508
BceAI ACGGC 2 cut(s) 41, 730
BcnI CCSGG 1 cut(s) 221
BfaI CTAG 7 cut(s) 35, 74, 108, 362, 416, 458, 808
BfoI RGCGCY 1 cut(s) 764
BglI GCCNNNNNGGC 1 cut(s) 62
BisI GCNGC 3 cut(s) 49, 90, 198
BlsI GCNGC 3 cut(s) 50, 91, 199
Bme1390I CCNGG 1 cut(s) 221
BmiI GGNNCC 3 cut(s) 55, 382, 805
BmrFI CCNGG 1 cut(s) 221
BmrI ACTGGG 1 cut(s) 594
BmsI GCATC 4 cut(s) 47, 136, 476, 698
BmtI GCTAGC 1 cut(s) 77
BmuI ACTGGG 1 cut(s) 594
BpiI GAAGAC 2 cut(s) 587, 777
BplI GAGNNNNNCTC 2 cut(s) 695, 727
Bpu14I TTCGAA 1 cut(s) 17
BpuMI CCSGG 1 cut(s) 221
BsaHI GRCGYC 1 cut(s) 182
BsaJI CCNNGG 3 cut(s) 57, 386, 462
BsaWI WCCGGW 2 cut(s) 439, 594
BsaXI ACNNNNNCTCC 2 cut(s) 45, 75
Bsc4I CCNNNNNNNGG 4 cut(s) 226, 390, 463, 601
Bse118I RCCGGY 2 cut(s) 439, 757
Bse1I ACTGG 1 cut(s) 589
Bse3DI GCAATG 1 cut(s) 626
BseDI CCNNGG 3 cut(s) 57, 386, 462
BseGI GGATG 2 cut(s) 38, 772
BseLI CCNNNNNNNGG 4 cut(s) 226, 390, 463, 601
BseMI GCAATG 1 cut(s) 626
BseNI ACTGG 1 cut(s) 589
BseSI GKGCMC 2 cut(s) 385, 456
BseXI GCAGC 2 cut(s) 76, 184
Bsh1236I CGCG 2 cut(s) 71, 85
BshNI GGYRCC 1 cut(s) 380
BshTI ACCGGT 1 cut(s) 439
BsiHKAI GWGCWC 1 cut(s) 752
BsiSI CCGG 4 cut(s) 221, 440, 595, 758
BslI CCNNNNNNNGG 4 cut(s) 226, 390, 463, 601
BsmI GAATGC 1 cut(s) 577
Bsp119I TTCGAA 1 cut(s) 17
Bsp1286I GDGCHC 3 cut(s) 385, 456, 752
Bsp143I GATC 4 cut(s) 349, 358, 531, 803
Bsp19I CCATGG 2 cut(s) 386, 462
BspACI CCGC 7 cut(s) 48, 51, 77, 156, 245, 376, 614
BspFNI CGCG 2 cut(s) 71, 85
BspHI TCATGA 1 cut(s) 522
BspLI GGNNCC 3 cut(s) 55, 382, 805
BspOI GCTAGC 1 cut(s) 77
BspPI GGATC 2 cut(s) 357, 798
BspT104I TTCGAA 1 cut(s) 17
BspT107I GGYRCC 1 cut(s) 380
BsrBI CCGCTC 2 cut(s) 48, 245
BsrDI GCAATG 1 cut(s) 626
BsrFI RCCGGY 2 cut(s) 439, 757
BsrI ACTGG 1 cut(s) 589
BssAI RCCGGY 2 cut(s) 439, 757
BssECI CCNNGG 3 cut(s) 57, 386, 462
BssMI GATC 4 cut(s) 349, 358, 531, 803
BssNI GRCGYC 1 cut(s) 182
BssSI CACGAG 1 cut(s) 43
BssT1I CCWWGG 2 cut(s) 386, 462
Bst2BI CACGAG 1 cut(s) 43
Bst4CI ACNGT 1 cut(s) 97
Bst6I CTCTTC 2 cut(s) 243, 489
BstACI GRCGYC 1 cut(s) 182
BstBI TTCGAA 1 cut(s) 17
BstC8I GCNNGC 2 cut(s) 75, 87
BstDEI CTNAG 1 cut(s) 576
BstDSI CCRYGG 3 cut(s) 57, 386, 462
BstF5I GGATG 2 cut(s) 38, 772
BstFNI CGCG 2 cut(s) 71, 85
BstH2I RGCGCY 1 cut(s) 764
BstHHI GCGC 3 cut(s) 73, 85, 763
BstKTI GATC 4 cut(s) 352, 361, 534, 806
BstMBI GATC 4 cut(s) 349, 358, 531, 803
BstMWI GCNNNNNNNGC 3 cut(s) 62, 89, 637
BstNSI RCATGY 1 cut(s) 737
BstSCI CCNGG 1 cut(s) 219
BstSLI GKGCMC 2 cut(s) 385, 456
BstUI CGCG 2 cut(s) 71, 85
BstV1I GCAGC 2 cut(s) 76, 184
BstV2I GAAGAC 2 cut(s) 587, 777
BstX2I RGATCY 2 cut(s) 349, 803
BstYI RGATCY 2 cut(s) 349, 803
BtgI CCRYGG 3 cut(s) 57, 386, 462
BtsCI GGATG 2 cut(s) 38, 772
BtsI GCAGTG 1 cut(s) 647
BtsIMutI CAGTG 1 cut(s) 647
Cac8I GCNNGC 2 cut(s) 75, 87
CciI TCATGA 1 cut(s) 522
CfoI GCGC 3 cut(s) 73, 85, 763
Cfr10I RCCGGY 2 cut(s) 439, 757
CseI GACGC 1 cut(s) 171
Csp6I GTAC 1 cut(s) 166
CspAI ACCGGT 1 cut(s) 439
CviAII CATG 6 cut(s) 270, 387, 463, 523, 529, 734
CviQI GTAC 1 cut(s) 166
DdeI CTNAG 1 cut(s) 576
DpnI GATC 4 cut(s) 351, 360, 533, 805
DpnII GATC 4 cut(s) 349, 358, 531, 803
Eam1104I CTCTTC 2 cut(s) 243, 489
EarI CTCTTC 2 cut(s) 243, 489
EciI GGCGGA 1 cut(s) 66
Eco130I CCWWGG 2 cut(s) 386, 462
Eco57I CTGAAG 1 cut(s) 470
EcoT14I CCWWGG 2 cut(s) 386, 462
ErhI CCWWGG 2 cut(s) 386, 462
FaeI CATG 6 cut(s) 273, 390, 466, 526, 532, 737
FatI CATG 6 cut(s) 269, 386, 462, 522, 528, 733
FauI CCCGC 1 cut(s) 369
Fnu4HI GCNGC 3 cut(s) 49, 90, 198
FokI GGATG 2 cut(s) 25, 779
Fsp4HI GCNGC 3 cut(s) 49, 90, 198
FspBI CTAG 7 cut(s) 35, 74, 108, 362, 416, 458, 808
GlaI GCGC 3 cut(s) 72, 84, 762
GluI GCNGC 3 cut(s) 49, 90, 198
HaeII RGCGCY 1 cut(s) 764
HapII CCGG 4 cut(s) 221, 440, 595, 758
HgaI GACGC 1 cut(s) 171
HhaI GCGC 3 cut(s) 73, 85, 763
Hin1I GRCGYC 1 cut(s) 182
Hin1II CATG 6 cut(s) 273, 390, 466, 526, 532, 737
Hin6I GCGC 3 cut(s) 71, 83, 761
HinP1I GCGC 3 cut(s) 71, 83, 761
HindIII AAGCTT 1 cut(s) 695
HinfI GANTC 2 cut(s) 119, 266
HpaII CCGG 4 cut(s) 221, 440, 595, 758
HphI GGTGA 1 cut(s) 235
Hpy166II GTNNAC 1 cut(s) 166
Hpy188I TCNGA 5 cut(s) 349, 358, 369, 514, 754
Hpy188III TCNNGA 4 cut(s) 27, 523, 557, 703
Hpy8I GTNNAC 1 cut(s) 166
HpyAV CCTTC 1 cut(s) 231
HpyCH4III ACNGT 1 cut(s) 97
HpyCH4IV ACGT 1 cut(s) 542
HpyF10VI GCNNNNNNNGC 3 cut(s) 62, 89, 637
HpyF3I CTNAG 1 cut(s) 576
HpySE526I ACGT 1 cut(s) 542
Hsp92I GRCGYC 1 cut(s) 182
Hsp92II CATG 6 cut(s) 273, 390, 466, 526, 532, 737
HspAI GCGC 3 cut(s) 71, 83, 761
Kzo9I GATC 4 cut(s) 349, 358, 531, 803
LmnI GCTCC 2 cut(s) 53, 755
Lsp1109I GCAGC 2 cut(s) 76, 184
LweI GCATC 4 cut(s) 47, 136, 476, 698
MaeI CTAG 7 cut(s) 35, 74, 108, 362, 416, 458, 808
MaeII ACGT 1 cut(s) 542
MaeIII GTNAC 2 cut(s) 296, 727
MalI GATC 4 cut(s) 351, 360, 533, 805
MbiI CCGCTC 2 cut(s) 48, 245
MboI GATC 4 cut(s) 349, 358, 531, 803
MboII GAAGA 5 cut(s) 260, 476, 592, 668, 782
MflI RGATCY 2 cut(s) 349, 803
MhlI GDGCHC 3 cut(s) 385, 456, 752
MluCI AATT 5 cut(s) 6, 137, 561, 680, 792
MlyI GAGTC 1 cut(s) 275
MmeI TCCRAC 1 cut(s) 327
MnlI CCTC 5 cut(s) 73, 104, 248, 304, 321
MslI CAYNNNNRTG 5 cut(s) 305, 407, 440, 527, 734
MspA1I CMGCKG 1 cut(s) 616
MspI CCGG 4 cut(s) 221, 440, 595, 758
MspR9I CCNGG 1 cut(s) 221
Mva1269I GAATGC 1 cut(s) 577
MvnI CGCG 2 cut(s) 71, 85
MwoI GCNNNNNNNGC 3 cut(s) 62, 89, 637
NciI CCSGG 1 cut(s) 221
NcoI CCATGG 2 cut(s) 386, 462
NdeII GATC 4 cut(s) 349, 358, 531, 803
NheI GCTAGC 1 cut(s) 73
NlaIII CATG 6 cut(s) 273, 390, 466, 526, 532, 737
NlaIV GGNNCC 3 cut(s) 55, 382, 805
NmuCI GTSAC 2 cut(s) 296, 727
NspI RCATGY 1 cut(s) 737
NspV TTCGAA 1 cut(s) 17
OliI CACNNNNGTG 2 cut(s) 407, 734
PagI TCATGA 1 cut(s) 522
PciI ACATGT 1 cut(s) 733
PctI GAATGC 1 cut(s) 577
PfeI GAWTC 1 cut(s) 119
PinAI ACCGGT 1 cut(s) 439
PkrI GCNGC 3 cut(s) 50, 91, 199
PleI GAGTC 1 cut(s) 274
PpsI GAGTC 1 cut(s) 274
PscI ACATGT 1 cut(s) 733
PspN4I GGNNCC 3 cut(s) 55, 382, 805
PsuI RGATCY 2 cut(s) 349, 803
RsaI GTAC 1 cut(s) 167
RsaNI GTAC 1 cut(s) 166
RseI CAYNNNNRTG 5 cut(s) 305, 407, 440, 527, 734
SatI GCNGC 3 cut(s) 49, 90, 198
Sau3AI GATC 4 cut(s) 349, 358, 531, 803
SchI GAGTC 1 cut(s) 275
ScrFI CCNGG 1 cut(s) 221
SduI GDGCHC 3 cut(s) 385, 456, 752
SetI ASST 8 cut(s) 14, 115, 199, 259, 298, 421, 545, 699
SfaNI GCATC 4 cut(s) 47, 136, 476, 698
SfuI TTCGAA 1 cut(s) 17
SmiMI CAYNNNNRTG 5 cut(s) 305, 407, 440, 527, 734
Sse9I AATT 5 cut(s) 6, 137, 561, 680, 792
SsiI CCGC 7 cut(s) 48, 51, 77, 156, 245, 376, 614
SspMI CTAG 7 cut(s) 35, 74, 108, 362, 416, 458, 808
StyD4I CCNGG 1 cut(s) 219
StyI CCWWGG 2 cut(s) 386, 462
TaaI ACNGT 1 cut(s) 97
TaiI ACGT 1 cut(s) 545
TaqI TCGA 5 cut(s) 17, 144, 264, 277, 702
TasI AATT 5 cut(s) 6, 137, 561, 680, 792
TauI GCSGC 1 cut(s) 51
TfiI GAWTC 1 cut(s) 119
TscAI CASTG 1 cut(s) 647
TseFI GTSAC 2 cut(s) 296, 727
TseI GCWGC 2 cut(s) 89, 197
Tsp45I GTSAC 2 cut(s) 296, 727
TspDTI ATGAA 3 cut(s) 675, 783, 795
TspRI CASTG 1 cut(s) 647
XceI RCATGY 1 cut(s) 737
XspI CTAG 7 cut(s) 35, 74, 108, 362, 416, 458, 808
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.