Rmu_sc0001179.1_g000016

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001179.1
OG0000187
Physical Location & Seq
Forward (+)
76865 .. 77248
384 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001179.1_g000016.1.cds

Sequence Viewer

Length: 384 bp
atgagttccgttgatgtcatggctgctcgactcgcctcctctcttgcactggcagagggaaagaagaaggtagatctccgtccatcgcaaggtaagggcttgcagcaatctgaagtctttttggttgggaaacttctcactgctagggagttcaaggttcgttccttcctaggtttgtttcgatatgcttggagggtcaatgggacgctgcaagttgaagaagctgaaggaggtagggttttgttcactgtttcggatcctacagaccgggctagggtgcggaggggtgcgccatgggggttttactgtgctttcgtagttttggctaagtatgatggggttatgccaattgagaaggtgcctttggtgaagtcctcctattga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4283 RVT_1 RVT_3 zf-CCHC_4 zf-RVT

Protein Analysis

127

Amino Acids

14.07

Weight (kDa)

9.93

Isoelectric Point (pI)

48.55

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000187)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g20170 FvH4_4g06831
rosa_chinensis RchiOBHm_Chr1g0321991 RchiOBHm_Chr2g0161811
rosa_laevigata RLG00000015375 RLG00000018377
rosa_multiflora Rmu_co8011754.1_g000001 Rmu_co8019986.1_g000001 Rmu_co8067766.1_g000001 Rmu_co8156128.1_g000001 Rmu_co8219154.1_g000003 Rmu_co8297235.1_g000001 Rmu_co8345223.1_g000001 Rmu_co8364775.1_g000001 Rmu_co8465075.1_g000001 Rmu_sc0000007.1_g000002 Rmu_sc0000054.1_g000015 Rmu_sc0000054.1_g000023 Rmu_sc0000145.1_g000010 Rmu_sc0000166.1_g000006 Rmu_sc0000218.1_g000012 Rmu_sc0000339.1_g000008 Rmu_sc0000342.1_g000015 Rmu_sc0000464.1_g000008 Rmu_sc0000620.1_g000003 Rmu_sc0000638.1_g000017 Rmu_sc0000890.1_g000007 Rmu_sc0000894.1_g000024 Rmu_sc0000909.1_g000010 Rmu_sc0000928.1_g000020 Rmu_sc0000977.1_g000007 Rmu_sc0001022.1_g000003 Rmu_sc0001035.1_g000037 Rmu_sc0001060.1_g000008 Rmu_sc0001168.1_g000005 Rmu_sc0001173.1_g000022 Rmu_sc0001179.1_g000016 Rmu_sc0001408.1_g000003 Rmu_sc0001455.1_g000005 Rmu_sc0001484.1_g000008 Rmu_sc0001585.1_g000010 Rmu_sc0001702.1_g000030 Rmu_sc0001755.1_g000063 Rmu_sc0001903.1_g000009 Rmu_sc0002099.1_g000001 Rmu_sc0002142.1_g000012 Rmu_sc0002158.1_g000014 Rmu_sc0002307.1_g000009 Rmu_sc0002358.1_g000013 Rmu_sc0002421.1_g000002 Rmu_sc0002426.1_g000003 Rmu_sc0002438.1_g000001 Rmu_sc0002461.1_g000001 Rmu_sc0002508.1_g000003 Rmu_sc0002532.1_g000056 Rmu_sc0002583.1_g000002 Rmu_sc0002927.1_g000033 Rmu_sc0003033.1_g000040 Rmu_sc0003271.1_g000006 Rmu_sc0003381.1_g000006 Rmu_sc0003507.1_g000007 Rmu_sc0003578.1_g000003 Rmu_sc0003693.1_g000004 Rmu_sc0003693.1_g000005 Rmu_sc0003704.1_g000003 Rmu_sc0003840.1_g000002 Rmu_sc0004084.1_g000026 Rmu_sc0004193.1_g000007 Rmu_sc0004234.1_g000033 Rmu_sc0004235.1_g000025 Rmu_sc0004435.1_g000006 Rmu_sc0004727.1_g000003 Rmu_sc0004741.1_g000001 Rmu_sc0004926.1_g000004 Rmu_sc0005365.1_g000001 Rmu_sc0005392.1_g000007 Rmu_sc0005415.1_g000001 Rmu_sc0005539.1_g000007 Rmu_sc0005708.1_g000017 Rmu_sc0006317.1_g000007 Rmu_sc0006453.1_g000054 Rmu_sc0006536.1_g000004 Rmu_sc0006740.1_g000022 Rmu_sc0006763.1_g000012 Rmu_sc0007115.1_g000002 Rmu_sc0007115.1_g000010 Rmu_sc0007129.1_g000017 Rmu_sc0007131.1_g000010 Rmu_sc0008373.1_g000008 Rmu_sc0009005.1_g000008 Rmu_sc0009252.1_g000007 Rmu_sc0009599.1_g000022 Rmu_sc0009785.1_g000027 Rmu_sc0009891.1_g000003 Rmu_sc0010099.1_g000010 Rmu_sc0010266.1_g000008 Rmu_sc0010334.1_g000003 Rmu_sc0010381.1_g000001 Rmu_sc0010496.1_g000003 Rmu_sc0010496.1_g000004 Rmu_sc0010546.1_g000003 Rmu_sc0011482.1_g000006 Rmu_sc0011875.1_g000010 Rmu_sc0011917.1_g000006 Rmu_sc0012293.1_g000004 Rmu_sc0012847.1_g000003 Rmu_sc0013773.1_g000001 Rmu_sc0016060.1_g000003 Rmu_sc0016170.1_g000013 Rmu_sc0016393.1_g000002 Rmu_sc0017589.1_g000001 Rmu_sc0017786.1_g000005 Rmu_sc0018326.1_g000002 Rmu_sc0020760.1_g000001 Rmu_sc0021262.1_g000003 Rmu_sc0023851.1_g000002 Rmu_sc0024044.1_g000001 Rmu_sc0026820.1_g000001 Rmu_sc0032306.1_g000001 Rmu_sc0035666.1_g000001 Rmu_sc0036881.1_g000001 Rmu_sc0037030.1_g000001 Rmu_sc0037158.1_g000001 Rmu_ssc0000016.1_g000002 Rmu_ssc0000044.1_g000012 Rmu_ssc0000044.1_g000014 Rmu_ssc0000050.1_g000064 Rmu_ssc0000064.1_g000022 Rmu_ssc0000154.1_g000037 Rmu_ssc0000178.1_g000013 Rmu_ssc0000217.1_g000022 Rmu_ssc0000392.1_g000004
rosa_roxburghii Rroxscaffold_3G00242000 Rroxscaffold_3G00242530 Rroxscaffold_6G00406010
rosa_rugosa Rorug01G0062000 Rorug02G0224000 Rorug02G0262900 Rorug02G0263000 Rorug02G0358900 Rorug02G0360500 Rorug02G0378500.1 Rorug02G0378600 Rorug02G0394700 Rorug03G0122900 Rorug03G0254600 Rorug03G0254700 Rorug03G0254800 Rorug04G0042200.1 Rorug04G0378100 Rorug05G0053400 Rorug05G0238600 Rorug05G0364500 Rorug05G0562000 Rorug06G0089300 Rorug06G0089400 Rorug06G0145700 Rorug07G0111600 Rorug07G0229500.1 Rorug07G0287600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 358
AciI CCGC 1 cut(s) 280
AclWI GGATC 2 cut(s) 251, 264
AcuI CTGAAG 2 cut(s) 132, 246
AfiI CCNNNNNNNGG 2 cut(s) 89, 274
AgsI TTSAA 2 cut(s) 154, 218
AjuI GAANNNNNNNTTGG 2 cut(s) 347, 379
AluBI AGCT 1 cut(s) 224
AluI AGCT 1 cut(s) 224
AlwI GGATC 2 cut(s) 251, 264
ApeKI GCWGC 3 cut(s) 23, 103, 208
AspA2I CCTAGG 1 cut(s) 169
AspLEI GCGC 1 cut(s) 292
AsuC2I CCSGG 1 cut(s) 269
AsuHPI GGTGA 1 cut(s) 379
AvrII CCTAGG 1 cut(s) 169
BamHI GGATCC 1 cut(s) 256
BanI GGYRCC 1 cut(s) 358
BbvI GCAGC 3 cut(s) 10, 115, 195
BccI CCATC 2 cut(s) 91, 329
BcnI CCSGG 1 cut(s) 269
BfaI CTAG 3 cut(s) 144, 170, 273
BfmI CTRYAG 1 cut(s) 261
BglII AGATCT 1 cut(s) 73
BisI GCNGC 3 cut(s) 24, 104, 209
BlnI CCTAGG 1 cut(s) 169
BlsI GCNGC 3 cut(s) 25, 105, 210
Bme1390I CCNGG 1 cut(s) 269
BmiI GGNNCC 2 cut(s) 258, 360
BmrFI CCNGG 1 cut(s) 269
BpuMI CCSGG 1 cut(s) 269
BsaJI CCNNGG 2 cut(s) 169, 293
BsaXI ACNNNNNCTCC 2 cut(s) 222, 252
Bsc4I CCNNNNNNNGG 2 cut(s) 89, 274
Bse1I ACTGG 1 cut(s) 54
BseDI CCNNGG 2 cut(s) 169, 293
BseLI CCNNNNNNNGG 2 cut(s) 89, 274
BseNI ACTGG 1 cut(s) 54
BseRI GAGGAG 1 cut(s) 28
BseXI GCAGC 3 cut(s) 10, 115, 195
BshNI GGYRCC 1 cut(s) 358
BsiSI CCGG 1 cut(s) 268
BslFI GGGAC 1 cut(s) 217
BslI CCNNNNNNNGG 2 cut(s) 89, 274
BsmFI GGGAC 1 cut(s) 217
Bsp143I GATC 2 cut(s) 73, 256
Bsp19I CCATGG 1 cut(s) 293
BspACI CCGC 1 cut(s) 280
BspLI GGNNCC 2 cut(s) 258, 360
BspPI GGATC 2 cut(s) 251, 264
BspT107I GGYRCC 1 cut(s) 358
BsrI ACTGG 1 cut(s) 54
BssECI CCNNGG 2 cut(s) 169, 293
BssMI GATC 2 cut(s) 73, 256
BssT1I CCWWGG 2 cut(s) 169, 293
Bst4CI ACNGT 2 cut(s) 250, 308
BstC8I GCNNGC 1 cut(s) 101
BstDEI CTNAG 1 cut(s) 327
BstDSI CCRYGG 1 cut(s) 293
BstHHI GCGC 1 cut(s) 292
BstKTI GATC 2 cut(s) 76, 259
BstMBI GATC 2 cut(s) 73, 256
BstMWI GCNNNNNNNGC 1 cut(s) 32
BstSCI CCNGG 1 cut(s) 267
BstSFI CTRYAG 1 cut(s) 261
BstV1I GCAGC 3 cut(s) 10, 115, 195
BstX2I RGATCY 2 cut(s) 73, 256
BstYI RGATCY 2 cut(s) 73, 256
BtgI CCRYGG 1 cut(s) 293
BtgZI GCGATG 1 cut(s) 69
BtsI GCAGTG 1 cut(s) 138
BtsIMutI CAGTG 3 cut(s) 47, 138, 246
Cac8I GCNNGC 1 cut(s) 101
CfoI GCGC 1 cut(s) 292
CseI GACGC 1 cut(s) 214
CviAII CATG 2 cut(s) 19, 294
CviJI RGCY 5 cut(s) 23, 99, 224, 272, 326
CviKI_1 RGCY 5 cut(s) 23, 99, 224, 272, 326
DdeI CTNAG 1 cut(s) 327
DpnI GATC 2 cut(s) 75, 258
DpnII GATC 2 cut(s) 73, 256
Eco130I CCWWGG 2 cut(s) 169, 293
Eco57I CTGAAG 2 cut(s) 132, 246
EcoT14I CCWWGG 2 cut(s) 169, 293
ErhI CCWWGG 2 cut(s) 169, 293
FaeI CATG 2 cut(s) 22, 297
FaiI YATR 5 cut(s) 20, 186, 295, 333, 344
FaqI GGGAC 1 cut(s) 217
FatI CATG 2 cut(s) 18, 293
Fnu4HI GCNGC 3 cut(s) 24, 104, 209
Fsp4HI GCNGC 3 cut(s) 24, 104, 209
FspBI CTAG 3 cut(s) 144, 170, 273
GlaI GCGC 1 cut(s) 291
GluI GCNGC 3 cut(s) 24, 104, 209
HapII CCGG 1 cut(s) 268
HgaI GACGC 1 cut(s) 214
HhaI GCGC 1 cut(s) 292
Hin1II CATG 2 cut(s) 22, 297
Hin6I GCGC 1 cut(s) 290
HinP1I GCGC 1 cut(s) 290
HinfI GANTC 1 cut(s) 30
HpaII CCGG 1 cut(s) 268
HphI GGTGA 1 cut(s) 379
Hpy166II GTNNAC 1 cut(s) 246
Hpy188I TCNGA 2 cut(s) 112, 256
Hpy8I GTNNAC 1 cut(s) 246
HpyAV CCTTC 4 cut(s) 61, 175, 221, 349
HpyCH4III ACNGT 2 cut(s) 250, 308
HpyCH4V TGCA 3 cut(s) 47, 103, 211
HpyF10VI GCNNNNNNNGC 1 cut(s) 32
HpyF3I CTNAG 1 cut(s) 327
Hsp92II CATG 2 cut(s) 22, 297
HspAI GCGC 1 cut(s) 290
Kzo9I GATC 2 cut(s) 73, 256
LpnPI CCDG 2 cut(s) 35, 281
Lsp1109I GCAGC 3 cut(s) 10, 115, 195
MaeI CTAG 3 cut(s) 144, 170, 273
MalI GATC 2 cut(s) 75, 258
MboI GATC 2 cut(s) 73, 256
MboII GAAGA 2 cut(s) 76, 230
MfeI CAATTG 1 cut(s) 348
MflI RGATCY 2 cut(s) 73, 256
MluCI AATT 1 cut(s) 348
MlyI GAGTC 1 cut(s) 24
MnlI CCTC 6 cut(s) 46, 49, 49, 186, 224, 276
MspI CCGG 1 cut(s) 268
MspR9I CCNGG 1 cut(s) 269
MunI CAATTG 1 cut(s) 348
MwoI GCNNNNNNNGC 1 cut(s) 32
NciI CCSGG 1 cut(s) 269
NcoI CCATGG 1 cut(s) 293
NdeII GATC 2 cut(s) 73, 256
NlaIII CATG 2 cut(s) 22, 297
NlaIV GGNNCC 2 cut(s) 258, 360
PkrI GCNGC 3 cut(s) 25, 105, 210
PleI GAGTC 1 cut(s) 24
PpsI GAGTC 1 cut(s) 24
PspN4I GGNNCC 2 cut(s) 258, 360
PsuI RGATCY 2 cut(s) 73, 256
SatI GCNGC 3 cut(s) 24, 104, 209
Sau3AI GATC 2 cut(s) 73, 256
SchI GAGTC 1 cut(s) 24
ScrFI CCNGG 1 cut(s) 269
SetI ASST 7 cut(s) 72, 94, 159, 175, 226, 235, 360
SfcI CTRYAG 1 cut(s) 261
Sse9I AATT 1 cut(s) 348
SsiI CCGC 1 cut(s) 280
SspMI CTAG 3 cut(s) 144, 170, 273
StyD4I CCNGG 1 cut(s) 267
StyI CCWWGG 2 cut(s) 169, 293
TaaI ACNGT 2 cut(s) 250, 308
TaqI TCGA 2 cut(s) 28, 181
TasI AATT 1 cut(s) 348
TscAI CASTG 3 cut(s) 54, 145, 253
TseI GCWGC 3 cut(s) 23, 103, 208
TspGWI ACGGA 1 cut(s) 68
TspRI CASTG 3 cut(s) 54, 145, 253
XmaJI CCTAGG 1 cut(s) 169
XspI CTAG 3 cut(s) 144, 170, 273
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.