Rorug03G0254800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0000187
Physical Location & Seq
Forward (+)
24178958 .. 24179317
360 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0254800.1

Sequence Viewer

Length: 360 bp
ATGGTTTGTTTAGCTCCAAGGATACACTTCACACCATGGGAGTTAGAGCGGAACGATGGAGATCCTGACCACTTGCTGTATTTCGGTCACTTTATTAAGGACCTGCCCTTGACAGATGATGAGGAAGTACTGGCAGATGAGGAAGTGGTGAATTTGGAAGATGTTTTCAACTTTGCTCAAGTGAACCAGCCAAGTTCTGGTGTTGGACCTGGGCCAGATGTAAGTGGAAGCAGCCAACCATTTGATGGGCCAAGTGAGGTGCCAAGTGATGGGCCAAGGAATGTGAACAGAAGTAGGCCAATGAATGTCAACAGAGGTGCATGTGCAAAGGAATGGGCCAAGGAATGTGAACAGGAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

119

Amino Acids

13.21

Weight (kDa)

4.35

Isoelectric Point (pI)

47.59

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000187)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g20170 FvH4_4g06831
rosa_chinensis RchiOBHm_Chr1g0321991 RchiOBHm_Chr2g0161811
rosa_laevigata RLG00000015375 RLG00000018377
rosa_multiflora Rmu_co8011754.1_g000001 Rmu_co8019986.1_g000001 Rmu_co8067766.1_g000001 Rmu_co8156128.1_g000001 Rmu_co8219154.1_g000003 Rmu_co8297235.1_g000001 Rmu_co8345223.1_g000001 Rmu_co8364775.1_g000001 Rmu_co8465075.1_g000001 Rmu_sc0000007.1_g000002 Rmu_sc0000054.1_g000015 Rmu_sc0000054.1_g000023 Rmu_sc0000145.1_g000010 Rmu_sc0000166.1_g000006 Rmu_sc0000218.1_g000012 Rmu_sc0000339.1_g000008 Rmu_sc0000342.1_g000015 Rmu_sc0000464.1_g000008 Rmu_sc0000620.1_g000003 Rmu_sc0000638.1_g000017 Rmu_sc0000890.1_g000007 Rmu_sc0000894.1_g000024 Rmu_sc0000909.1_g000010 Rmu_sc0000928.1_g000020 Rmu_sc0000977.1_g000007 Rmu_sc0001022.1_g000003 Rmu_sc0001035.1_g000037 Rmu_sc0001060.1_g000008 Rmu_sc0001168.1_g000005 Rmu_sc0001173.1_g000022 Rmu_sc0001179.1_g000016 Rmu_sc0001408.1_g000003 Rmu_sc0001455.1_g000005 Rmu_sc0001484.1_g000008 Rmu_sc0001585.1_g000010 Rmu_sc0001702.1_g000030 Rmu_sc0001755.1_g000063 Rmu_sc0001903.1_g000009 Rmu_sc0002099.1_g000001 Rmu_sc0002142.1_g000012 Rmu_sc0002158.1_g000014 Rmu_sc0002307.1_g000009 Rmu_sc0002358.1_g000013 Rmu_sc0002421.1_g000002 Rmu_sc0002426.1_g000003 Rmu_sc0002438.1_g000001 Rmu_sc0002461.1_g000001 Rmu_sc0002508.1_g000003 Rmu_sc0002532.1_g000056 Rmu_sc0002583.1_g000002 Rmu_sc0002927.1_g000033 Rmu_sc0003033.1_g000040 Rmu_sc0003271.1_g000006 Rmu_sc0003381.1_g000006 Rmu_sc0003507.1_g000007 Rmu_sc0003578.1_g000003 Rmu_sc0003693.1_g000004 Rmu_sc0003693.1_g000005 Rmu_sc0003704.1_g000003 Rmu_sc0003840.1_g000002 Rmu_sc0004084.1_g000026 Rmu_sc0004193.1_g000007 Rmu_sc0004234.1_g000033 Rmu_sc0004235.1_g000025 Rmu_sc0004435.1_g000006 Rmu_sc0004727.1_g000003 Rmu_sc0004741.1_g000001 Rmu_sc0004926.1_g000004 Rmu_sc0005365.1_g000001 Rmu_sc0005392.1_g000007 Rmu_sc0005415.1_g000001 Rmu_sc0005539.1_g000007 Rmu_sc0005708.1_g000017 Rmu_sc0006317.1_g000007 Rmu_sc0006453.1_g000054 Rmu_sc0006536.1_g000004 Rmu_sc0006740.1_g000022 Rmu_sc0006763.1_g000012 Rmu_sc0007115.1_g000002 Rmu_sc0007115.1_g000010 Rmu_sc0007129.1_g000017 Rmu_sc0007131.1_g000010 Rmu_sc0008373.1_g000008 Rmu_sc0009005.1_g000008 Rmu_sc0009252.1_g000007 Rmu_sc0009599.1_g000022 Rmu_sc0009785.1_g000027 Rmu_sc0009891.1_g000003 Rmu_sc0010099.1_g000010 Rmu_sc0010266.1_g000008 Rmu_sc0010334.1_g000003 Rmu_sc0010381.1_g000001 Rmu_sc0010496.1_g000003 Rmu_sc0010496.1_g000004 Rmu_sc0010546.1_g000003 Rmu_sc0011482.1_g000006 Rmu_sc0011875.1_g000010 Rmu_sc0011917.1_g000006 Rmu_sc0012293.1_g000004 Rmu_sc0012847.1_g000003 Rmu_sc0013773.1_g000001 Rmu_sc0016060.1_g000003 Rmu_sc0016170.1_g000013 Rmu_sc0016393.1_g000002 Rmu_sc0017589.1_g000001 Rmu_sc0017786.1_g000005 Rmu_sc0018326.1_g000002 Rmu_sc0020760.1_g000001 Rmu_sc0021262.1_g000003 Rmu_sc0023851.1_g000002 Rmu_sc0024044.1_g000001 Rmu_sc0026820.1_g000001 Rmu_sc0032306.1_g000001 Rmu_sc0035666.1_g000001 Rmu_sc0036881.1_g000001 Rmu_sc0037030.1_g000001 Rmu_sc0037158.1_g000001 Rmu_ssc0000016.1_g000002 Rmu_ssc0000044.1_g000012 Rmu_ssc0000044.1_g000014 Rmu_ssc0000050.1_g000064 Rmu_ssc0000064.1_g000022 Rmu_ssc0000154.1_g000037 Rmu_ssc0000178.1_g000013 Rmu_ssc0000217.1_g000022 Rmu_ssc0000392.1_g000004
rosa_roxburghii Rroxscaffold_3G00242000 Rroxscaffold_3G00242530 Rroxscaffold_6G00406010
rosa_rugosa Rorug01G0062000 Rorug02G0224000 Rorug02G0262900 Rorug02G0263000 Rorug02G0358900 Rorug02G0360500 Rorug02G0378500.1 Rorug02G0378600 Rorug02G0394700 Rorug03G0122900 Rorug03G0254600 Rorug03G0254700 Rorug03G0254800 Rorug04G0042200.1 Rorug04G0378100 Rorug05G0053400 Rorug05G0238600 Rorug05G0364500 Rorug05G0562000 Rorug06G0089300 Rorug06G0089400 Rorug06G0145700 Rorug07G0111600 Rorug07G0229500.1 Rorug07G0287600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 111
AccB1I GGYRCC 1 cut(s) 259
AccB7I CCANNNNNTGG 3 cut(s) 197, 245, 269
AccBSI CCGCTC 1 cut(s) 49
AciI CCGC 1 cut(s) 49
AclWI GGATC 1 cut(s) 56
AcsI RAATTY 1 cut(s) 151
AfaI GTAC 1 cut(s) 129
AfiI CCNNNNNNNGG 3 cut(s) 197, 245, 269
AgsI TTSAA 1 cut(s) 169
AjnI CCWGG 1 cut(s) 208
AluBI AGCT 1 cut(s) 14
AluI AGCT 1 cut(s) 14
AlwI GGATC 1 cut(s) 56
AoxI GGCC 5 cut(s) 212, 248, 272, 296, 336
ApeKI GCWGC 1 cut(s) 231
ApoI RAATTY 1 cut(s) 151
AspS9I GGNCC 6 cut(s) 100, 206, 212, 248, 272, 336
AsuHPI GGTGA 1 cut(s) 160
AvaII GGWCC 2 cut(s) 100, 206
BanI GGYRCC 1 cut(s) 259
BbvI GCAGC 1 cut(s) 243
BccI CCATC 3 cut(s) 50, 239, 263
BciT130I CCWGG 1 cut(s) 210
BciVI GTATCC 1 cut(s) 15
BfuAI ACCTGC 1 cut(s) 111
BfuI GTATCC 1 cut(s) 15
BisI GCNGC 1 cut(s) 232
BlsI GCNGC 1 cut(s) 233
BmcAI AGTACT 1 cut(s) 129
Bme1390I CCNGG 1 cut(s) 210
Bme18I GGWCC 2 cut(s) 100, 206
BmgT120I GGNCC 6 cut(s) 100, 206, 212, 248, 272, 336
BmiI GGNNCC 1 cut(s) 261
BmrFI CCNGG 1 cut(s) 210
BpuEI CTTGAG 1 cut(s) 162
BsaBI GATNNNNATC 1 cut(s) 60
BsaJI CCNNGG 5 cut(s) 17, 35, 209, 275, 339
Bsc4I CCNNNNNNNGG 3 cut(s) 197, 245, 269
Bse1I ACTGG 1 cut(s) 135
Bse8I GATNNNNATC 1 cut(s) 60
BseBI CCWGG 1 cut(s) 210
BseDI CCNNGG 5 cut(s) 17, 35, 209, 275, 339
BseJI GATNNNNATC 1 cut(s) 60
BseLI CCNNNNNNNGG 3 cut(s) 197, 245, 269
BseNI ACTGG 1 cut(s) 135
BseXI GCAGC 1 cut(s) 243
BshFI GGCC 5 cut(s) 214, 250, 274, 298, 338
BshNI GGYRCC 1 cut(s) 259
BslI CCNNNNNNNGG 3 cut(s) 197, 245, 269
BsnI GGCC 5 cut(s) 214, 250, 274, 298, 338
Bsp143I GATC 1 cut(s) 61
Bsp19I CCATGG 1 cut(s) 35
BspACI CCGC 1 cut(s) 49
BspANI GGCC 5 cut(s) 214, 250, 274, 298, 338
BspLI GGNNCC 1 cut(s) 261
BspMI ACCTGC 1 cut(s) 111
BspPI GGATC 1 cut(s) 56
BspT107I GGYRCC 1 cut(s) 259
BsrBI CCGCTC 1 cut(s) 49
BsrI ACTGG 1 cut(s) 135
BssECI CCNNGG 5 cut(s) 17, 35, 209, 275, 339
BssMI GATC 1 cut(s) 61
BssT1I CCWWGG 4 cut(s) 17, 35, 275, 339
Bst2UI CCWGG 1 cut(s) 210
BstDSI CCRYGG 1 cut(s) 35
BstKTI GATC 1 cut(s) 64
BstMBI GATC 1 cut(s) 61
BstNI CCWGG 1 cut(s) 210
BstNSI RCATGY 1 cut(s) 324
BstSCI CCNGG 1 cut(s) 208
BstV1I GCAGC 1 cut(s) 243
BstX2I RGATCY 1 cut(s) 61
BstYI RGATCY 1 cut(s) 61
BsuI GTATCC 1 cut(s) 15
BsuRI GGCC 5 cut(s) 214, 250, 274, 298, 338
BtgI CCRYGG 1 cut(s) 35
BveI ACCTGC 1 cut(s) 111
Cfr13I GGNCC 6 cut(s) 100, 206, 212, 248, 272, 336
Csp6I GTAC 1 cut(s) 128
CviAII CATG 2 cut(s) 36, 321
CviJI RGCY 8 cut(s) 14, 190, 214, 234, 250, 274, 298, 338
CviKI_1 RGCY 8 cut(s) 14, 190, 214, 234, 250, 274, 298, 338
CviQI GTAC 1 cut(s) 128
DpnI GATC 1 cut(s) 63
DpnII GATC 1 cut(s) 61
Eco130I CCWWGG 4 cut(s) 17, 35, 275, 339
Eco47I GGWCC 2 cut(s) 100, 206
EcoO109I RGGNCCY 1 cut(s) 100
EcoRII CCWGG 1 cut(s) 208
EcoT14I CCWWGG 4 cut(s) 17, 35, 275, 339
ErhI CCWWGG 4 cut(s) 17, 35, 275, 339
FaeI CATG 2 cut(s) 39, 324
FaiI YATR 2 cut(s) 37, 322
FatI CATG 2 cut(s) 35, 320
Fnu4HI GCNGC 1 cut(s) 232
Fsp4HI GCNGC 1 cut(s) 232
GluI GCNGC 1 cut(s) 232
HaeIII GGCC 5 cut(s) 214, 250, 274, 298, 338
Hin1II CATG 2 cut(s) 39, 324
HincII GTYRAC 1 cut(s) 310
HindII GTYRAC 1 cut(s) 310
HphI GGTGA 1 cut(s) 160
Hpy166II GTNNAC 4 cut(s) 184, 286, 310, 350
Hpy188III TCNNGA 1 cut(s) 65
Hpy8I GTNNAC 4 cut(s) 184, 286, 310, 350
HpyCH4V TGCA 2 cut(s) 320, 326
Hsp92II CATG 2 cut(s) 39, 324
Kzo9I GATC 1 cut(s) 61
LmnI GCTCC 1 cut(s) 19
LpnPI CCDG 9 cut(s) 78, 116, 116, 183, 195, 200, 222, 228, 338
Lsp1109I GCAGC 1 cut(s) 243
MaeIII GTNAC 1 cut(s) 86
MalI GATC 1 cut(s) 63
MbiI CCGCTC 1 cut(s) 49
MboI GATC 1 cut(s) 61
MboII GAAGA 1 cut(s) 170
MflI RGATCY 1 cut(s) 61
MluCI AATT 1 cut(s) 151
MmeI TCCRAC 1 cut(s) 184
MnlI CCTC 4 cut(s) 115, 133, 250, 308
MseI TTAA 1 cut(s) 96
MspR9I CCNGG 1 cut(s) 210
MvaI CCWGG 1 cut(s) 210
NcoI CCATGG 1 cut(s) 35
NdeII GATC 1 cut(s) 61
NlaIII CATG 2 cut(s) 39, 324
NlaIV GGNNCC 1 cut(s) 261
NmuCI GTSAC 1 cut(s) 86
NspI RCATGY 1 cut(s) 324
PflMI CCANNNNNTGG 3 cut(s) 197, 245, 269
PkrI GCNGC 1 cut(s) 233
PpuMI RGGWCCY 1 cut(s) 100
Psp5II RGGWCCY 1 cut(s) 100
Psp6I CCWGG 1 cut(s) 208
PspGI CCWGG 1 cut(s) 208
PspN4I GGNNCC 1 cut(s) 261
PspPI GGNCC 6 cut(s) 100, 206, 212, 248, 272, 336
PspPPI RGGWCCY 1 cut(s) 100
PsuI RGATCY 1 cut(s) 61
RsaI GTAC 1 cut(s) 129
RsaNI GTAC 1 cut(s) 128
SaqAI TTAA 1 cut(s) 96
SatI GCNGC 1 cut(s) 232
Sau3AI GATC 1 cut(s) 61
Sau96I GGNCC 6 cut(s) 100, 206, 212, 248, 272, 336
ScaI AGTACT 1 cut(s) 129
ScrFI CCNGG 1 cut(s) 210
SetI ASST 5 cut(s) 16, 105, 211, 261, 319
SinI GGWCC 2 cut(s) 100, 206
SmlI CTYRAG 1 cut(s) 177
SmoI CTYRAG 1 cut(s) 177
Sse9I AATT 1 cut(s) 151
SsiI CCGC 1 cut(s) 49
StyD4I CCNGG 1 cut(s) 208
StyI CCWWGG 4 cut(s) 17, 35, 275, 339
TaqII GACCGA 1 cut(s) 74
TasI AATT 1 cut(s) 151
TatI WGTACW 1 cut(s) 127
Tru1I TTAA 1 cut(s) 96
Tru9I TTAA 1 cut(s) 96
TseFI GTSAC 1 cut(s) 86
TseI GCWGC 1 cut(s) 231
Tsp45I GTSAC 1 cut(s) 86
TspDTI ATGAA 1 cut(s) 317
Van91I CCANNNNNTGG 3 cut(s) 197, 245, 269
VpaK11BI GGWCC 2 cut(s) 100, 206
XapI RAATTY 1 cut(s) 151
XceI RCATGY 1 cut(s) 324
XcmI CCANNNNNNNNNTGG 2 cut(s) 194, 242
ZrmI AGTACT 1 cut(s) 129
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.