Rmu_sc0017786.1_g000005

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0017786.1
OG0000187
Physical Location & Seq
Reverse (-)
13681 .. 14442
762 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0017786.1_g000005.1.cds

Sequence Viewer

Length: 762 bp
atgttccgcaatgcatggcgggtgaatggatcactaagggtggaggaagcgaagggacagagggttctcatcactttgtcggacgctactgaccgagatcggatctggaagggatctccatggggatataatcacgctccgattgccctagcttactatgatggtgcggcggccatggactcggtccctttcaccgtatcctcatactggattacactgcaaggaatccctcctgcgttctgctcggagaggatgatgactatgattgggtttacccttggtgatttcaaggagattgataaacaggccaagaaggttggaaagctcctaatcagggtggagatccctttcaaccggcctctgtccttccaacgctggtattgggtagaggatgaggtcgagttcctctgcaagtttccgtttgataaactttttggtcgatgctcgatttgtggctatgttactcacgtaggtctaccttgctcgggacctccattggaggagaatgatgtggcagaacgcacggttctgggtgcgtcacagatggggcaccctaactcgacctctggttcggcatcatctagcacagtgtgtgcaggaactcgggctagggtttgcatgggaggtccggatgtggtcttccgtactgtgcttcccaaccaactgtcggagcgattgcttcacaatccggcagtgctgctacaacggccccggcgtccaactcatatcagagagctgcctgagatgatggttgtcccataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4283 RVT_1 RVT_3 zf-CCHC_4 zf-RVT

Protein Analysis

253

Amino Acids

28.35

Weight (kDa)

8.69

Isoelectric Point (pI)

39.71

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000187)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g20170 FvH4_4g06831
rosa_chinensis RchiOBHm_Chr1g0321991 RchiOBHm_Chr2g0161811
rosa_laevigata RLG00000015375 RLG00000018377
rosa_multiflora Rmu_co8011754.1_g000001 Rmu_co8019986.1_g000001 Rmu_co8067766.1_g000001 Rmu_co8156128.1_g000001 Rmu_co8219154.1_g000003 Rmu_co8297235.1_g000001 Rmu_co8345223.1_g000001 Rmu_co8364775.1_g000001 Rmu_co8465075.1_g000001 Rmu_sc0000007.1_g000002 Rmu_sc0000054.1_g000015 Rmu_sc0000054.1_g000023 Rmu_sc0000145.1_g000010 Rmu_sc0000166.1_g000006 Rmu_sc0000218.1_g000012 Rmu_sc0000339.1_g000008 Rmu_sc0000342.1_g000015 Rmu_sc0000464.1_g000008 Rmu_sc0000620.1_g000003 Rmu_sc0000638.1_g000017 Rmu_sc0000890.1_g000007 Rmu_sc0000894.1_g000024 Rmu_sc0000909.1_g000010 Rmu_sc0000928.1_g000020 Rmu_sc0000977.1_g000007 Rmu_sc0001022.1_g000003 Rmu_sc0001035.1_g000037 Rmu_sc0001060.1_g000008 Rmu_sc0001168.1_g000005 Rmu_sc0001173.1_g000022 Rmu_sc0001179.1_g000016 Rmu_sc0001408.1_g000003 Rmu_sc0001455.1_g000005 Rmu_sc0001484.1_g000008 Rmu_sc0001585.1_g000010 Rmu_sc0001702.1_g000030 Rmu_sc0001755.1_g000063 Rmu_sc0001903.1_g000009 Rmu_sc0002099.1_g000001 Rmu_sc0002142.1_g000012 Rmu_sc0002158.1_g000014 Rmu_sc0002307.1_g000009 Rmu_sc0002358.1_g000013 Rmu_sc0002421.1_g000002 Rmu_sc0002426.1_g000003 Rmu_sc0002438.1_g000001 Rmu_sc0002461.1_g000001 Rmu_sc0002508.1_g000003 Rmu_sc0002532.1_g000056 Rmu_sc0002583.1_g000002 Rmu_sc0002927.1_g000033 Rmu_sc0003033.1_g000040 Rmu_sc0003271.1_g000006 Rmu_sc0003381.1_g000006 Rmu_sc0003507.1_g000007 Rmu_sc0003578.1_g000003 Rmu_sc0003693.1_g000004 Rmu_sc0003693.1_g000005 Rmu_sc0003704.1_g000003 Rmu_sc0003840.1_g000002 Rmu_sc0004084.1_g000026 Rmu_sc0004193.1_g000007 Rmu_sc0004234.1_g000033 Rmu_sc0004235.1_g000025 Rmu_sc0004435.1_g000006 Rmu_sc0004727.1_g000003 Rmu_sc0004741.1_g000001 Rmu_sc0004926.1_g000004 Rmu_sc0005365.1_g000001 Rmu_sc0005392.1_g000007 Rmu_sc0005415.1_g000001 Rmu_sc0005539.1_g000007 Rmu_sc0005708.1_g000017 Rmu_sc0006317.1_g000007 Rmu_sc0006453.1_g000054 Rmu_sc0006536.1_g000004 Rmu_sc0006740.1_g000022 Rmu_sc0006763.1_g000012 Rmu_sc0007115.1_g000002 Rmu_sc0007115.1_g000010 Rmu_sc0007129.1_g000017 Rmu_sc0007131.1_g000010 Rmu_sc0008373.1_g000008 Rmu_sc0009005.1_g000008 Rmu_sc0009252.1_g000007 Rmu_sc0009599.1_g000022 Rmu_sc0009785.1_g000027 Rmu_sc0009891.1_g000003 Rmu_sc0010099.1_g000010 Rmu_sc0010266.1_g000008 Rmu_sc0010334.1_g000003 Rmu_sc0010381.1_g000001 Rmu_sc0010496.1_g000003 Rmu_sc0010496.1_g000004 Rmu_sc0010546.1_g000003 Rmu_sc0011482.1_g000006 Rmu_sc0011875.1_g000010 Rmu_sc0011917.1_g000006 Rmu_sc0012293.1_g000004 Rmu_sc0012847.1_g000003 Rmu_sc0013773.1_g000001 Rmu_sc0016060.1_g000003 Rmu_sc0016170.1_g000013 Rmu_sc0016393.1_g000002 Rmu_sc0017589.1_g000001 Rmu_sc0017786.1_g000005 Rmu_sc0018326.1_g000002 Rmu_sc0020760.1_g000001 Rmu_sc0021262.1_g000003 Rmu_sc0023851.1_g000002 Rmu_sc0024044.1_g000001 Rmu_sc0026820.1_g000001 Rmu_sc0032306.1_g000001 Rmu_sc0035666.1_g000001 Rmu_sc0036881.1_g000001 Rmu_sc0037030.1_g000001 Rmu_sc0037158.1_g000001 Rmu_ssc0000016.1_g000002 Rmu_ssc0000044.1_g000012 Rmu_ssc0000044.1_g000014 Rmu_ssc0000050.1_g000064 Rmu_ssc0000064.1_g000022 Rmu_ssc0000154.1_g000037 Rmu_ssc0000178.1_g000013 Rmu_ssc0000217.1_g000022 Rmu_ssc0000392.1_g000004
rosa_roxburghii Rroxscaffold_3G00242000 Rroxscaffold_3G00242530 Rroxscaffold_6G00406010
rosa_rugosa Rorug01G0062000 Rorug02G0224000 Rorug02G0262900 Rorug02G0263000 Rorug02G0358900 Rorug02G0360500 Rorug02G0378500.1 Rorug02G0378600 Rorug02G0394700 Rorug03G0122900 Rorug03G0254600 Rorug03G0254700 Rorug03G0254800 Rorug04G0042200.1 Rorug04G0378100 Rorug05G0053400 Rorug05G0238600 Rorug05G0364500 Rorug05G0562000 Rorug06G0089300 Rorug06G0089400 Rorug06G0145700 Rorug07G0111600 Rorug07G0229500.1 Rorug07G0287600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 549
AccI GTMKAC 1 cut(s) 475
AccIII TCCGGA 1 cut(s) 628
AciI CCGC 4 cut(s) 7, 19, 167, 170
AclWI GGATC 4 cut(s) 37, 110, 121, 337
AcoI YGGCCR 1 cut(s) 171
AcyI GRCGYC 1 cut(s) 715
AdeI CACNNNGTG 1 cut(s) 591
AfaI GTAC 1 cut(s) 646
AfiI CCNNNNNNNGG 4 cut(s) 207, 334, 485, 667
AgsI TTSAA 2 cut(s) 289, 352
AloI GAACNNNNNNTCC 2 cut(s) 48, 80
AluBI AGCT 3 cut(s) 152, 325, 736
AluI AGCT 3 cut(s) 152, 325, 736
AlwI GGATC 4 cut(s) 37, 110, 121, 337
Ama87I CYCGRG 2 cut(s) 484, 603
Aor13HI TCCGGA 1 cut(s) 628
AoxI GGCC 4 cut(s) 171, 306, 356, 707
ApeKI GCWGC 2 cut(s) 697, 736
ArsI GACNNNNNNTTYG 2 cut(s) 553, 585
AspS9I GGNCC 4 cut(s) 184, 488, 626, 708
AsuC2I CCSGG 1 cut(s) 712
AsuHPI GGTGA 3 cut(s) 34, 184, 293
AvaI CYCGRG 2 cut(s) 484, 603
AvaII GGWCC 3 cut(s) 184, 488, 626
BaeGI GKGCMC 1 cut(s) 552
BanI GGYRCC 1 cut(s) 549
BbsI GAAGAC 1 cut(s) 631
BbvI GCAGC 2 cut(s) 684, 723
BccI CCATC 3 cut(s) 155, 538, 742
BceAI ACGGC 1 cut(s) 722
BciVI GTATCC 1 cut(s) 208
BcnI CCSGG 1 cut(s) 712
BfaI CTAG 3 cut(s) 149, 582, 609
BfuI GTATCC 1 cut(s) 208
BisI GCNGC 4 cut(s) 168, 171, 698, 737
BlsI GCNGC 4 cut(s) 169, 172, 699, 738
Bme1390I CCNGG 1 cut(s) 712
Bme18I GGWCC 3 cut(s) 184, 488, 626
BmeT110I CYCGRG 2 cut(s) 484, 603
BmgT120I GGNCC 4 cut(s) 184, 488, 626, 708
BmiI GGNNCC 4 cut(s) 186, 489, 551, 710
BmrFI CCNGG 1 cut(s) 712
BmsI GCATC 2 cut(s) 431, 584
BpiI GAAGAC 1 cut(s) 631
BpuMI CCSGG 1 cut(s) 712
BsaAI YACGTR 1 cut(s) 469
BsaHI GRCGYC 1 cut(s) 715
BsaJI CCNNGG 4 cut(s) 119, 174, 277, 710
BsaWI WCCGGW 1 cut(s) 628
Bsc4I CCNNNNNNNGG 4 cut(s) 207, 334, 485, 667
Bse118I RCCGGY 1 cut(s) 354
Bse1I ACTGG 1 cut(s) 212
Bse3DI GCAATG 1 cut(s) 16
BseAI TCCGGA 1 cut(s) 628
BseDI CCNNGG 4 cut(s) 119, 174, 277, 710
BseGI GGATG 3 cut(s) 258, 397, 637
BseLI CCNNNNNNNGG 4 cut(s) 207, 334, 485, 667
BseMI GCAATG 1 cut(s) 16
BseMII CTCAG 1 cut(s) 732
BseNI ACTGG 1 cut(s) 212
BseRI GAGGAG 1 cut(s) 515
BseSI GKGCMC 1 cut(s) 552
BseXI GCAGC 2 cut(s) 684, 723
BsgI GTGCAG 1 cut(s) 615
BshFI GGCC 4 cut(s) 173, 308, 358, 709
BshNI GGYRCC 1 cut(s) 549
BsiHKCI CYCGRG 2 cut(s) 484, 603
BsiSI CCGG 4 cut(s) 355, 629, 689, 712
BslFI GGGAC 4 cut(s) 69, 170, 501, 740
BslI CCNNNNNNNGG 4 cut(s) 207, 334, 485, 667
BsmFI GGGAC 4 cut(s) 69, 170, 501, 740
BsnI GGCC 4 cut(s) 173, 308, 358, 709
BsoBI CYCGRG 2 cut(s) 484, 603
Bsp1286I GDGCHC 1 cut(s) 552
Bsp13I TCCGGA 1 cut(s) 628
Bsp143I GATC 5 cut(s) 29, 97, 102, 113, 342
Bsp19I CCATGG 2 cut(s) 119, 174
BspACI CCGC 4 cut(s) 7, 19, 167, 170
BspANI GGCC 4 cut(s) 173, 308, 358, 709
BspCNI CTCAG 1 cut(s) 733
BspEI TCCGGA 1 cut(s) 628
BspLI GGNNCC 4 cut(s) 186, 489, 551, 710
BspPI GGATC 4 cut(s) 37, 110, 121, 337
BspT107I GGYRCC 1 cut(s) 549
BsrDI GCAATG 1 cut(s) 16
BsrFI RCCGGY 1 cut(s) 354
BsrI ACTGG 1 cut(s) 212
BssAI RCCGGY 1 cut(s) 354
BssECI CCNNGG 4 cut(s) 119, 174, 277, 710
BssMI GATC 5 cut(s) 29, 97, 102, 113, 342
BssNI GRCGYC 1 cut(s) 715
BssT1I CCWWGG 3 cut(s) 119, 174, 277
Bst4CI ACNGT 5 cut(s) 196, 526, 589, 649, 666
BstACI GRCGYC 1 cut(s) 715
BstBAI YACGTR 1 cut(s) 469
BstDEI CTNAG 2 cut(s) 35, 741
BstDSI CCRYGG 2 cut(s) 119, 174
BstF5I GGATG 3 cut(s) 258, 397, 637
BstKTI GATC 5 cut(s) 32, 100, 105, 116, 345
BstMBI GATC 5 cut(s) 29, 97, 102, 113, 342
BstMWI GCNNNNNNNGC 2 cut(s) 143, 706
BstSCI CCNGG 1 cut(s) 710
BstSLI GKGCMC 1 cut(s) 552
BstV1I GCAGC 2 cut(s) 684, 723
BstV2I GAAGAC 1 cut(s) 631
BstX2I RGATCY 3 cut(s) 102, 113, 342
BstYI RGATCY 3 cut(s) 102, 113, 342
BsuI GTATCC 1 cut(s) 208
BsuRI GGCC 4 cut(s) 173, 308, 358, 709
BtgI CCRYGG 2 cut(s) 119, 174
BtsCI GGATG 3 cut(s) 258, 397, 637
BtsI GCAGTG 2 cut(s) 215, 699
BtsIMutI CAGTG 3 cut(s) 215, 594, 699
Cfr10I RCCGGY 1 cut(s) 354
Cfr13I GGNCC 4 cut(s) 184, 488, 626, 708
CseI GACGC 3 cut(s) 92, 525, 704
Csp6I GTAC 1 cut(s) 645
CviAII CATG 4 cut(s) 15, 120, 175, 619
CviJI RGCY 9 cut(s) 152, 173, 308, 325, 358, 456, 608, 709, 736
CviKI_1 RGCY 9 cut(s) 152, 173, 308, 325, 358, 456, 608, 709, 736
CviQI GTAC 1 cut(s) 645
DdeI CTNAG 2 cut(s) 35, 741
DpnI GATC 5 cut(s) 31, 99, 104, 115, 344
DpnII GATC 5 cut(s) 29, 97, 102, 113, 342
DraIII CACNNNGTG 1 cut(s) 591
EaeI YGGCCR 1 cut(s) 171
Eco130I CCWWGG 3 cut(s) 119, 174, 277
Eco47I GGWCC 3 cut(s) 184, 488, 626
Eco88I CYCGRG 2 cut(s) 484, 603
EcoO109I RGGNCCY 1 cut(s) 488
EcoT14I CCWWGG 3 cut(s) 119, 174, 277
EcoT22I ATGCAT 1 cut(s) 16
ErhI CCWWGG 3 cut(s) 119, 174, 277
FaeI CATG 4 cut(s) 18, 123, 178, 622
FaqI GGGAC 4 cut(s) 69, 170, 501, 740
FatI CATG 4 cut(s) 14, 119, 174, 618
FauI CCCGC 1 cut(s) 12
FblI GTMKAC 1 cut(s) 475
Fnu4HI GCNGC 4 cut(s) 168, 171, 698, 737
FokI GGATG 3 cut(s) 265, 404, 644
Fsp4HI GCNGC 4 cut(s) 168, 171, 698, 737
FspBI CTAG 3 cut(s) 149, 582, 609
GluI GCNGC 4 cut(s) 168, 171, 698, 737
HaeIII GGCC 4 cut(s) 173, 308, 358, 709
HapII CCGG 4 cut(s) 355, 629, 689, 712
HgaI GACGC 3 cut(s) 92, 525, 704
Hin1I GRCGYC 1 cut(s) 715
Hin1II CATG 4 cut(s) 18, 123, 178, 622
HinfI GANTC 2 cut(s) 179, 225
HpaII CCGG 4 cut(s) 355, 629, 689, 712
HphI GGTGA 3 cut(s) 34, 184, 293
Hpy166II GTNNAC 2 cut(s) 273, 476
Hpy188I TCNGA 6 cut(s) 82, 102, 141, 247, 670, 731
Hpy188III TCNNGA 3 cut(s) 106, 486, 629
Hpy8I GTNNAC 2 cut(s) 273, 476
HpyAV CCTTC 4 cut(s) 46, 103, 307, 376
HpyCH4III ACNGT 5 cut(s) 196, 526, 589, 649, 666
HpyCH4IV ACGT 1 cut(s) 468
HpyCH4V TGCA 5 cut(s) 14, 220, 411, 596, 618
HpyF10VI GCNNNNNNNGC 2 cut(s) 143, 706
HpyF3I CTNAG 2 cut(s) 35, 741
HpySE526I ACGT 1 cut(s) 468
Hsp92I GRCGYC 1 cut(s) 715
Hsp92II CATG 4 cut(s) 18, 123, 178, 622
Kpn2I TCCGGA 1 cut(s) 628
Kzo9I GATC 5 cut(s) 29, 97, 102, 113, 342
LmnI GCTCC 3 cut(s) 142, 330, 670
Lsp1109I GCAGC 2 cut(s) 684, 723
LweI GCATC 2 cut(s) 431, 584
MaeI CTAG 3 cut(s) 149, 582, 609
MaeII ACGT 1 cut(s) 468
MaeIII GTNAC 2 cut(s) 460, 537
MalI GATC 5 cut(s) 31, 99, 104, 115, 344
MboI GATC 5 cut(s) 29, 97, 102, 113, 342
MboII GAAGA 1 cut(s) 631
MflI RGATCY 3 cut(s) 102, 113, 342
MhlI GDGCHC 1 cut(s) 552
MlyI GAGTC 1 cut(s) 173
MmeI TCCRAC 5 cut(s) 60, 298, 394, 648, 743
Mph1103I ATGCAT 1 cut(s) 16
MroI TCCGGA 1 cut(s) 628
MspI CCGG 4 cut(s) 355, 629, 689, 712
MspR9I CCNGG 1 cut(s) 712
MwoI GCNNNNNNNGC 2 cut(s) 143, 706
NciI CCSGG 1 cut(s) 712
NcoI CCATGG 2 cut(s) 119, 174
NdeII GATC 5 cut(s) 29, 97, 102, 113, 342
NlaIII CATG 4 cut(s) 18, 123, 178, 622
NlaIV GGNNCC 4 cut(s) 186, 489, 551, 710
NmuCI GTSAC 1 cut(s) 537
NsiI ATGCAT 1 cut(s) 16
PcsI WCGNNNNNNNCGW 1 cut(s) 712
PfeI GAWTC 1 cut(s) 225
PflFI GACNNNGTC 1 cut(s) 182
PkrI GCNGC 4 cut(s) 169, 172, 699, 738
PleI GAGTC 1 cut(s) 173
PpsI GAGTC 1 cut(s) 173
Ppu21I YACGTR 1 cut(s) 469
PpuMI RGGWCCY 1 cut(s) 488
Psp5II RGGWCCY 1 cut(s) 488
PspN4I GGNNCC 4 cut(s) 186, 489, 551, 710
PspPI GGNCC 4 cut(s) 184, 488, 626, 708
PspPPI RGGWCCY 1 cut(s) 488
PsuI RGATCY 3 cut(s) 102, 113, 342
PsyI GACNNNGTC 1 cut(s) 182
RsaI GTAC 1 cut(s) 646
RsaNI GTAC 1 cut(s) 645
SatI GCNGC 4 cut(s) 168, 171, 698, 737
Sau3AI GATC 5 cut(s) 29, 97, 102, 113, 342
Sau96I GGNCC 4 cut(s) 184, 488, 626, 708
SchI GAGTC 1 cut(s) 173
ScrFI CCNGG 1 cut(s) 712
SduI GDGCHC 1 cut(s) 552
SfaNI GCATC 2 cut(s) 431, 584
SinI GGWCC 3 cut(s) 184, 488, 626
SsiI CCGC 4 cut(s) 7, 19, 167, 170
SspMI CTAG 3 cut(s) 149, 582, 609
StyD4I CCNGG 1 cut(s) 710
StyI CCWWGG 3 cut(s) 119, 174, 277
TaaI ACNGT 5 cut(s) 196, 526, 589, 649, 666
TaiI ACGT 1 cut(s) 471
TaqI TCGA 4 cut(s) 399, 439, 446, 560
TaqII GACCGA 2 cut(s) 108, 172
TauI GCSGC 2 cut(s) 170, 173
TfiI GAWTC 1 cut(s) 225
TscAI CASTG 3 cut(s) 222, 594, 699
TseFI GTSAC 1 cut(s) 537
TseI GCWGC 2 cut(s) 697, 736
Tsp45I GTSAC 1 cut(s) 537
TspGWI ACGGA 2 cut(s) 408, 632
TspRI CASTG 3 cut(s) 222, 594, 699
Tth111I GACNNNGTC 1 cut(s) 182
VpaK11BI GGWCC 3 cut(s) 184, 488, 626
XmiI GTMKAC 1 cut(s) 475
XspI CTAG 3 cut(s) 149, 582, 609
Zsp2I ATGCAT 1 cut(s) 16
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.