Rmu_sc0016060.1_g000003

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0016060.1
OG0000187
Physical Location & Seq
Reverse (-)
10899 .. 11707
809 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0016060.1_g000003.1.cds

Sequence Viewer

Length: 720 bp
atgacttctgttgatgctatggctgctcaactagcttcttctcttgcaattgctaagggaaagaaacaggtcgatctacaaccaacgcaaggaaaaggtgacaggcagatgtgtttttgggtggacgcagcggagggacagagggttcttatcactttgatgaacattactgacagtgatcagatctggaagggatctccatggggatataatcacactccaactgcactagcttactatgatggcgtggcggccattgaatcggtcccactcattgtatcttcgtactggatcacactgcagggcatacctcctgtgttcctctcagagaaggtgatgactatgatcgggtttacccttggcgatttcaaggagattgataaacaggccaataaggttggaaagcttcaaatcagggtagagattcatttcacccggcctttttccttccaccattggtattgggtagaggatgaggtcaagtttctctgcaaatttcattttgataaactatttggtcgatgctcgatttgcggccatgttactcaagtaggtctgccttgttcggggcctcaattagaggagaaggatgaggcagaacgcacgattatgggtgcgtcacagatgggtaacccttctacattggagatgcagctcgttgggaacaataactcgagctctggctcgacatcttctagtacactgtgtgcagaaacttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4283 RVT_1 RVT_3 zf-CCHC_4 zf-RVT

Protein Analysis

239

Amino Acids

26.42

Weight (kDa)

5.67

Isoelectric Point (pI)

28.6

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000187)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g20170 FvH4_4g06831
rosa_chinensis RchiOBHm_Chr1g0321991 RchiOBHm_Chr2g0161811
rosa_laevigata RLG00000015375 RLG00000018377
rosa_multiflora Rmu_co8011754.1_g000001 Rmu_co8019986.1_g000001 Rmu_co8067766.1_g000001 Rmu_co8156128.1_g000001 Rmu_co8219154.1_g000003 Rmu_co8297235.1_g000001 Rmu_co8345223.1_g000001 Rmu_co8364775.1_g000001 Rmu_co8465075.1_g000001 Rmu_sc0000007.1_g000002 Rmu_sc0000054.1_g000015 Rmu_sc0000054.1_g000023 Rmu_sc0000145.1_g000010 Rmu_sc0000166.1_g000006 Rmu_sc0000218.1_g000012 Rmu_sc0000339.1_g000008 Rmu_sc0000342.1_g000015 Rmu_sc0000464.1_g000008 Rmu_sc0000620.1_g000003 Rmu_sc0000638.1_g000017 Rmu_sc0000890.1_g000007 Rmu_sc0000894.1_g000024 Rmu_sc0000909.1_g000010 Rmu_sc0000928.1_g000020 Rmu_sc0000977.1_g000007 Rmu_sc0001022.1_g000003 Rmu_sc0001035.1_g000037 Rmu_sc0001060.1_g000008 Rmu_sc0001168.1_g000005 Rmu_sc0001173.1_g000022 Rmu_sc0001179.1_g000016 Rmu_sc0001408.1_g000003 Rmu_sc0001455.1_g000005 Rmu_sc0001484.1_g000008 Rmu_sc0001585.1_g000010 Rmu_sc0001702.1_g000030 Rmu_sc0001755.1_g000063 Rmu_sc0001903.1_g000009 Rmu_sc0002099.1_g000001 Rmu_sc0002142.1_g000012 Rmu_sc0002158.1_g000014 Rmu_sc0002307.1_g000009 Rmu_sc0002358.1_g000013 Rmu_sc0002421.1_g000002 Rmu_sc0002426.1_g000003 Rmu_sc0002438.1_g000001 Rmu_sc0002461.1_g000001 Rmu_sc0002508.1_g000003 Rmu_sc0002532.1_g000056 Rmu_sc0002583.1_g000002 Rmu_sc0002927.1_g000033 Rmu_sc0003033.1_g000040 Rmu_sc0003271.1_g000006 Rmu_sc0003381.1_g000006 Rmu_sc0003507.1_g000007 Rmu_sc0003578.1_g000003 Rmu_sc0003693.1_g000004 Rmu_sc0003693.1_g000005 Rmu_sc0003704.1_g000003 Rmu_sc0003840.1_g000002 Rmu_sc0004084.1_g000026 Rmu_sc0004193.1_g000007 Rmu_sc0004234.1_g000033 Rmu_sc0004235.1_g000025 Rmu_sc0004435.1_g000006 Rmu_sc0004727.1_g000003 Rmu_sc0004741.1_g000001 Rmu_sc0004926.1_g000004 Rmu_sc0005365.1_g000001 Rmu_sc0005392.1_g000007 Rmu_sc0005415.1_g000001 Rmu_sc0005539.1_g000007 Rmu_sc0005708.1_g000017 Rmu_sc0006317.1_g000007 Rmu_sc0006453.1_g000054 Rmu_sc0006536.1_g000004 Rmu_sc0006740.1_g000022 Rmu_sc0006763.1_g000012 Rmu_sc0007115.1_g000002 Rmu_sc0007115.1_g000010 Rmu_sc0007129.1_g000017 Rmu_sc0007131.1_g000010 Rmu_sc0008373.1_g000008 Rmu_sc0009005.1_g000008 Rmu_sc0009252.1_g000007 Rmu_sc0009599.1_g000022 Rmu_sc0009785.1_g000027 Rmu_sc0009891.1_g000003 Rmu_sc0010099.1_g000010 Rmu_sc0010266.1_g000008 Rmu_sc0010334.1_g000003 Rmu_sc0010381.1_g000001 Rmu_sc0010496.1_g000003 Rmu_sc0010496.1_g000004 Rmu_sc0010546.1_g000003 Rmu_sc0011482.1_g000006 Rmu_sc0011875.1_g000010 Rmu_sc0011917.1_g000006 Rmu_sc0012293.1_g000004 Rmu_sc0012847.1_g000003 Rmu_sc0013773.1_g000001 Rmu_sc0016060.1_g000003 Rmu_sc0016170.1_g000013 Rmu_sc0016393.1_g000002 Rmu_sc0017589.1_g000001 Rmu_sc0017786.1_g000005 Rmu_sc0018326.1_g000002 Rmu_sc0020760.1_g000001 Rmu_sc0021262.1_g000003 Rmu_sc0023851.1_g000002 Rmu_sc0024044.1_g000001 Rmu_sc0026820.1_g000001 Rmu_sc0032306.1_g000001 Rmu_sc0035666.1_g000001 Rmu_sc0036881.1_g000001 Rmu_sc0037030.1_g000001 Rmu_sc0037158.1_g000001 Rmu_ssc0000016.1_g000002 Rmu_ssc0000044.1_g000012 Rmu_ssc0000044.1_g000014 Rmu_ssc0000050.1_g000064 Rmu_ssc0000064.1_g000022 Rmu_ssc0000154.1_g000037 Rmu_ssc0000178.1_g000013 Rmu_ssc0000217.1_g000022 Rmu_ssc0000392.1_g000004
rosa_roxburghii Rroxscaffold_3G00242000 Rroxscaffold_3G00242530 Rroxscaffold_6G00406010
rosa_rugosa Rorug01G0062000 Rorug02G0224000 Rorug02G0262900 Rorug02G0263000 Rorug02G0358900 Rorug02G0360500 Rorug02G0378500.1 Rorug02G0378600 Rorug02G0394700 Rorug03G0122900 Rorug03G0254600 Rorug03G0254700 Rorug03G0254800 Rorug04G0042200.1 Rorug04G0378100 Rorug05G0053400 Rorug05G0238600 Rorug05G0364500 Rorug05G0562000 Rorug06G0089300 Rorug06G0089400 Rorug06G0145700 Rorug07G0111600 Rorug07G0229500.1 Rorug07G0287600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 131, 251, 534
AclWI GGATC 2 cut(s) 202, 299
AcoI YGGCCR 2 cut(s) 252, 535
AcsI RAATTY 1 cut(s) 494
AdeI CACNNNGTG 1 cut(s) 707
AfaI GTAC 2 cut(s) 287, 700
AfiI CCNNNNNNNGG 2 cut(s) 89, 566
AgsI TTSAA 3 cut(s) 260, 370, 410
AloI GAACNNNNNNTCC 2 cut(s) 129, 161
AluBI AGCT 5 cut(s) 35, 233, 406, 655, 678
AluI AGCT 5 cut(s) 35, 233, 406, 655, 678
Alw21I GWGCWC 1 cut(s) 680
AlwI GGATC 2 cut(s) 202, 299
Ama87I CYCGRG 1 cut(s) 673
AoxI GGCC 5 cut(s) 252, 387, 437, 535, 569
ApeKI GCWGC 3 cut(s) 23, 128, 652
ApoI RAATTY 1 cut(s) 494
AspS9I GGNCC 2 cut(s) 265, 569
AsuC2I CCSGG 1 cut(s) 436
AsuHPI GGTGA 3 cut(s) 110, 346, 424
AvaI CYCGRG 1 cut(s) 673
AvaII GGWCC 1 cut(s) 265
BanII GRGCYC 1 cut(s) 680
Bbv12I GWGCWC 1 cut(s) 680
BbvI GCAGC 3 cut(s) 10, 140, 664
BccI CCATC 2 cut(s) 236, 619
BclI TGATCA 1 cut(s) 178
BcnI CCSGG 1 cut(s) 436
BfaI CTAG 3 cut(s) 32, 230, 696
BfmI CTRYAG 1 cut(s) 299
BglII AGATCT 1 cut(s) 183
BisI GCNGC 5 cut(s) 24, 129, 252, 535, 653
BlsI GCNGC 5 cut(s) 25, 130, 253, 536, 654
Bme1390I CCNGG 1 cut(s) 436
Bme18I GGWCC 1 cut(s) 265
BmeT110I CYCGRG 1 cut(s) 673
BmgT120I GGNCC 2 cut(s) 265, 569
BmiI GGNNCC 2 cut(s) 267, 570
BmrFI CCNGG 1 cut(s) 436
BmsI GCATC 3 cut(s) 4, 512, 639
Bpu10I CCTNAGC 1 cut(s) 54
BpuEI CTTGAG 1 cut(s) 531
BpuMI CCSGG 1 cut(s) 436
BsaJI CCNNGG 2 cut(s) 200, 358
Bsc4I CCNNNNNNNGG 2 cut(s) 89, 566
Bse1I ACTGG 1 cut(s) 293
BseDI CCNNGG 2 cut(s) 200, 358
BseGI GGATG 2 cut(s) 478, 595
BseLI CCNNNNNNNGG 2 cut(s) 89, 566
BseMII CTCAG 1 cut(s) 339
BseNI ACTGG 1 cut(s) 293
BseRI GAGGAG 1 cut(s) 596
BseXI GCAGC 3 cut(s) 10, 140, 664
BsgI GTGCAG 1 cut(s) 210
BshFI GGCC 5 cut(s) 254, 389, 439, 537, 571
BsiHKAI GWGCWC 1 cut(s) 680
BsiHKCI CYCGRG 1 cut(s) 673
BsiSI CCGG 1 cut(s) 436
BslFI GGGAC 2 cut(s) 150, 251
BslI CCNNNNNNNGG 2 cut(s) 89, 566
BsmFI GGGAC 2 cut(s) 150, 251
BsnI GGCC 5 cut(s) 254, 389, 439, 537, 571
BsoBI CYCGRG 1 cut(s) 673
Bsp1286I GDGCHC 1 cut(s) 680
Bsp143I GATC 6 cut(s) 73, 178, 183, 194, 291, 345
Bsp19I CCATGG 1 cut(s) 200
BspACI CCGC 3 cut(s) 131, 251, 534
BspANI GGCC 5 cut(s) 254, 389, 439, 537, 571
BspCNI CTCAG 1 cut(s) 338
BspLI GGNNCC 2 cut(s) 267, 570
BspMAI CTGCAG 1 cut(s) 303
BspPI GGATC 2 cut(s) 202, 299
BsrI ACTGG 1 cut(s) 293
BssECI CCNNGG 2 cut(s) 200, 358
BssMI GATC 6 cut(s) 73, 178, 183, 194, 291, 345
BssT1I CCWWGG 2 cut(s) 200, 358
Bst4CI ACNGT 2 cut(s) 176, 705
BstDEI CTNAG 3 cut(s) 54, 325, 717
BstDSI CCRYGG 1 cut(s) 200
BstEII GGTNACC 1 cut(s) 629
BstF5I GGATG 2 cut(s) 478, 595
BstKTI GATC 6 cut(s) 76, 181, 186, 197, 294, 348
BstMBI GATC 6 cut(s) 73, 178, 183, 194, 291, 345
BstMWI GCNNNNNNNGC 3 cut(s) 23, 32, 531
BstPI GGTNACC 1 cut(s) 629
BstSCI CCNGG 1 cut(s) 434
BstSFI CTRYAG 1 cut(s) 299
BstV1I GCAGC 3 cut(s) 10, 140, 664
BstX2I RGATCY 2 cut(s) 183, 194
BstYI RGATCY 2 cut(s) 183, 194
BsuRI GGCC 5 cut(s) 254, 389, 439, 537, 571
BtgI CCRYGG 1 cut(s) 200
BtsCI GGATG 2 cut(s) 478, 595
BtsI GCAGTG 1 cut(s) 296
BtsIMutI CAGTG 3 cut(s) 181, 296, 701
Cfr13I GGNCC 2 cut(s) 265, 569
CseI GACGC 2 cut(s) 134, 606
Csp6I GTAC 2 cut(s) 286, 699
CviAII CATG 2 cut(s) 201, 539
CviQI GTAC 2 cut(s) 286, 699
DdeI CTNAG 3 cut(s) 54, 325, 717
DpnI GATC 6 cut(s) 75, 180, 185, 196, 293, 347
DpnII GATC 6 cut(s) 73, 178, 183, 194, 291, 345
DraIII CACNNNGTG 1 cut(s) 707
EaeI YGGCCR 2 cut(s) 252, 535
Ecl136II GAGCTC 1 cut(s) 678
Eco130I CCWWGG 2 cut(s) 200, 358
Eco24I GRGCYC 1 cut(s) 680
Eco47I GGWCC 1 cut(s) 265
Eco53kI GAGCTC 1 cut(s) 678
Eco88I CYCGRG 1 cut(s) 673
Eco91I GGTNACC 1 cut(s) 629
EcoICRI GAGCTC 1 cut(s) 678
EcoO109I RGGNCCY 1 cut(s) 569
EcoO65I GGTNACC 1 cut(s) 629
EcoT14I CCWWGG 2 cut(s) 200, 358
EcoT38I GRGCYC 1 cut(s) 680
ErhI CCWWGG 2 cut(s) 200, 358
FaeI CATG 2 cut(s) 204, 542
FaiI YATR 8 cut(s) 20, 202, 210, 240, 308, 344, 540, 611
FaqI GGGAC 2 cut(s) 150, 251
FatI CATG 2 cut(s) 200, 538
FbaI TGATCA 1 cut(s) 178
Fnu4HI GCNGC 5 cut(s) 24, 129, 252, 535, 653
FokI GGATG 2 cut(s) 485, 602
FriOI GRGCYC 1 cut(s) 680
Fsp4HI GCNGC 5 cut(s) 24, 129, 252, 535, 653
FspBI CTAG 3 cut(s) 32, 230, 696
GluI GCNGC 5 cut(s) 24, 129, 252, 535, 653
HaeIII GGCC 5 cut(s) 254, 389, 439, 537, 571
HapII CCGG 1 cut(s) 436
HgaI GACGC 2 cut(s) 134, 606
Hin1II CATG 2 cut(s) 204, 542
HindIII AAGCTT 1 cut(s) 404
HinfI GANTC 2 cut(s) 260, 424
HpaII CCGG 1 cut(s) 436
HphI GGTGA 3 cut(s) 110, 346, 424
Hpy166II GTNNAC 3 cut(s) 124, 354, 701
Hpy188I TCNGA 2 cut(s) 183, 328
Hpy188III TCNNGA 1 cut(s) 187
Hpy8I GTNNAC 3 cut(s) 124, 354, 701
HpyAV CCTTC 5 cut(s) 184, 325, 457, 580, 645
HpyCH4III ACNGT 2 cut(s) 176, 705
HpyCH4V TGCA 6 cut(s) 47, 227, 301, 492, 652, 710
HpyF10VI GCNNNNNNNGC 3 cut(s) 23, 32, 531
HpyF3I CTNAG 3 cut(s) 54, 325, 717
Hsp92II CATG 2 cut(s) 204, 542
Ksp22I TGATCA 1 cut(s) 178
Kzo9I GATC 6 cut(s) 73, 178, 183, 194, 291, 345
Lsp1109I GCAGC 3 cut(s) 10, 140, 664
LweI GCATC 3 cut(s) 4, 512, 639
MaeI CTAG 3 cut(s) 32, 230, 696
MaeIII GTNAC 4 cut(s) 98, 541, 618, 629
MalI GATC 6 cut(s) 75, 180, 185, 196, 293, 347
MboI GATC 6 cut(s) 73, 178, 183, 194, 291, 345
MboII GAAGA 3 cut(s) 30, 273, 684
MfeI CAATTG 1 cut(s) 48
MflI RGATCY 2 cut(s) 183, 194
MhlI GDGCHC 1 cut(s) 680
MluCI AATT 3 cut(s) 48, 494, 575
MmeI TCCRAC 2 cut(s) 245, 379
MnlI CCTC 9 cut(s) 127, 135, 321, 332, 463, 469, 574, 582, 586
MslI CAYNNNNRTG 2 cut(s) 158, 608
MspA1I CMGCKG 1 cut(s) 131
MspI CCGG 1 cut(s) 436
MspR9I CCNGG 1 cut(s) 436
MunI CAATTG 1 cut(s) 48
MwoI GCNNNNNNNGC 3 cut(s) 23, 32, 531
NciI CCSGG 1 cut(s) 436
NcoI CCATGG 1 cut(s) 200
NdeII GATC 6 cut(s) 73, 178, 183, 194, 291, 345
NlaIII CATG 2 cut(s) 204, 542
NlaIV GGNNCC 2 cut(s) 267, 570
NmuCI GTSAC 2 cut(s) 98, 618
PaeR7I CTCGAG 1 cut(s) 673
PfeI GAWTC 2 cut(s) 260, 424
PkrI GCNGC 5 cut(s) 25, 130, 253, 536, 654
Psp124BI GAGCTC 1 cut(s) 680
PspEI GGTNACC 1 cut(s) 629
PspN4I GGNNCC 2 cut(s) 267, 570
PspPI GGNCC 2 cut(s) 265, 569
PspXI VCTCGAGB 1 cut(s) 673
PstI CTGCAG 1 cut(s) 303
PsuI RGATCY 2 cut(s) 183, 194
RsaI GTAC 2 cut(s) 287, 700
RsaNI GTAC 2 cut(s) 286, 699
RseI CAYNNNNRTG 2 cut(s) 158, 608
SacI GAGCTC 1 cut(s) 680
SatI GCNGC 5 cut(s) 24, 129, 252, 535, 653
Sau3AI GATC 6 cut(s) 73, 178, 183, 194, 291, 345
Sau96I GGNCC 2 cut(s) 265, 569
ScrFI CCNGG 1 cut(s) 436
SduI GDGCHC 1 cut(s) 680
SfaNI GCATC 3 cut(s) 4, 512, 639
SfcI CTRYAG 1 cut(s) 299
Sfr274I CTCGAG 1 cut(s) 673
SinI GGWCC 1 cut(s) 265
SlaI CTCGAG 1 cut(s) 673
SmiMI CAYNNNNRTG 2 cut(s) 158, 608
SmlI CTYRAG 2 cut(s) 546, 673
SmoI CTYRAG 2 cut(s) 546, 673
Sse9I AATT 3 cut(s) 48, 494, 575
SsiI CCGC 3 cut(s) 131, 251, 534
SspMI CTAG 3 cut(s) 32, 230, 696
SstI GAGCTC 1 cut(s) 680
StyD4I CCNGG 1 cut(s) 434
StyI CCWWGG 2 cut(s) 200, 358
TaaI ACNGT 2 cut(s) 176, 705
TaqI TCGA 5 cut(s) 72, 520, 527, 674, 686
TaqII GACCGA 1 cut(s) 253
TasI AATT 3 cut(s) 48, 494, 575
TatI WGTACW 1 cut(s) 698
TauI GCSGC 2 cut(s) 254, 537
TfiI GAWTC 2 cut(s) 260, 424
TscAI CASTG 3 cut(s) 181, 303, 708
TseFI GTSAC 2 cut(s) 98, 618
TseI GCWGC 3 cut(s) 23, 128, 652
Tsp45I GTSAC 2 cut(s) 98, 618
TspDTI ATGAA 3 cut(s) 176, 416, 488
TspRI CASTG 3 cut(s) 181, 303, 708
VpaK11BI GGWCC 1 cut(s) 265
XapI RAATTY 1 cut(s) 494
XhoI CTCGAG 1 cut(s) 673
XspI CTAG 3 cut(s) 32, 230, 696
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.