Rmu_sc0007115.1_g000010

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0007115.1
OG0000187
Physical Location & Seq
Reverse (-)
28742 .. 29840
1099 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0007115.1_g000010.1.cds

Sequence Viewer

Length: 939 bp
atgtttcagaatgcatggagggtacacggatcgttgcgtgtggaggaagcggaggggcaaagggttcttgtcactctgtctgatgctacaattcaggatcagatctggaagggaggtctatggggttataatcacgctctaattgccctagcttactacgatggtgtggttgccattgaatcggtctccttcaccacatcgtcatactggatcactttgcaaggcatcccccctgcgttccgttccgaaagagtgatgactatgatcggctttactcttggtctcccatgctcagggcctcctttggaagagaatgatgaggcagaacgcacggtcctgggtgcgtcacagactagtcaccttgctgcaccggagccgcagtctgctgggcaacttatctcaacctcaagttgggcttcaactagcacagtgaatgcaggagttcgggctagggtttctttgggtggcaaggacgttgttttccgtattgtgcttcccaactctatgctggagcgactactccataattcggcgctgttgatgcgtcgacctcggcatcaagctaagatacgagaactgcctgagataatggctgtacctgacagcatcataggaaagaggagactgagggaggatgataccattattatatctccaaagaagctcaaactgagccttgccgttggaaaaagaaatttgaatatggaatcggagcaactaggtttagtaccggtgctgcaaactgaggaacagcccctccaggtgaagagaaagagggggagacctgtaggtagtaagaacaaattatcctatggggaaaagaagaaagcaaagcagggggacaagaccagggtaaagaaaaagcttctccccaagcttgacaaggcaagtggcagatcaggctccaatccgaaagggaaggagctaactcttttctaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4283 RVT_1 RVT_3 zf-CCHC_4 zf-RVT

Protein Analysis

312

Amino Acids

34.45

Weight (kDa)

10.02

Isoelectric Point (pI)

48.6

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000187)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g20170 FvH4_4g06831
rosa_chinensis RchiOBHm_Chr1g0321991 RchiOBHm_Chr2g0161811
rosa_laevigata RLG00000015375 RLG00000018377
rosa_multiflora Rmu_co8011754.1_g000001 Rmu_co8019986.1_g000001 Rmu_co8067766.1_g000001 Rmu_co8156128.1_g000001 Rmu_co8219154.1_g000003 Rmu_co8297235.1_g000001 Rmu_co8345223.1_g000001 Rmu_co8364775.1_g000001 Rmu_co8465075.1_g000001 Rmu_sc0000007.1_g000002 Rmu_sc0000054.1_g000015 Rmu_sc0000054.1_g000023 Rmu_sc0000145.1_g000010 Rmu_sc0000166.1_g000006 Rmu_sc0000218.1_g000012 Rmu_sc0000339.1_g000008 Rmu_sc0000342.1_g000015 Rmu_sc0000464.1_g000008 Rmu_sc0000620.1_g000003 Rmu_sc0000638.1_g000017 Rmu_sc0000890.1_g000007 Rmu_sc0000894.1_g000024 Rmu_sc0000909.1_g000010 Rmu_sc0000928.1_g000020 Rmu_sc0000977.1_g000007 Rmu_sc0001022.1_g000003 Rmu_sc0001035.1_g000037 Rmu_sc0001060.1_g000008 Rmu_sc0001168.1_g000005 Rmu_sc0001173.1_g000022 Rmu_sc0001179.1_g000016 Rmu_sc0001408.1_g000003 Rmu_sc0001455.1_g000005 Rmu_sc0001484.1_g000008 Rmu_sc0001585.1_g000010 Rmu_sc0001702.1_g000030 Rmu_sc0001755.1_g000063 Rmu_sc0001903.1_g000009 Rmu_sc0002099.1_g000001 Rmu_sc0002142.1_g000012 Rmu_sc0002158.1_g000014 Rmu_sc0002307.1_g000009 Rmu_sc0002358.1_g000013 Rmu_sc0002421.1_g000002 Rmu_sc0002426.1_g000003 Rmu_sc0002438.1_g000001 Rmu_sc0002461.1_g000001 Rmu_sc0002508.1_g000003 Rmu_sc0002532.1_g000056 Rmu_sc0002583.1_g000002 Rmu_sc0002927.1_g000033 Rmu_sc0003033.1_g000040 Rmu_sc0003271.1_g000006 Rmu_sc0003381.1_g000006 Rmu_sc0003507.1_g000007 Rmu_sc0003578.1_g000003 Rmu_sc0003693.1_g000004 Rmu_sc0003693.1_g000005 Rmu_sc0003704.1_g000003 Rmu_sc0003840.1_g000002 Rmu_sc0004084.1_g000026 Rmu_sc0004193.1_g000007 Rmu_sc0004234.1_g000033 Rmu_sc0004235.1_g000025 Rmu_sc0004435.1_g000006 Rmu_sc0004727.1_g000003 Rmu_sc0004741.1_g000001 Rmu_sc0004926.1_g000004 Rmu_sc0005365.1_g000001 Rmu_sc0005392.1_g000007 Rmu_sc0005415.1_g000001 Rmu_sc0005539.1_g000007 Rmu_sc0005708.1_g000017 Rmu_sc0006317.1_g000007 Rmu_sc0006453.1_g000054 Rmu_sc0006536.1_g000004 Rmu_sc0006740.1_g000022 Rmu_sc0006763.1_g000012 Rmu_sc0007115.1_g000002 Rmu_sc0007115.1_g000010 Rmu_sc0007129.1_g000017 Rmu_sc0007131.1_g000010 Rmu_sc0008373.1_g000008 Rmu_sc0009005.1_g000008 Rmu_sc0009252.1_g000007 Rmu_sc0009599.1_g000022 Rmu_sc0009785.1_g000027 Rmu_sc0009891.1_g000003 Rmu_sc0010099.1_g000010 Rmu_sc0010266.1_g000008 Rmu_sc0010334.1_g000003 Rmu_sc0010381.1_g000001 Rmu_sc0010496.1_g000003 Rmu_sc0010496.1_g000004 Rmu_sc0010546.1_g000003 Rmu_sc0011482.1_g000006 Rmu_sc0011875.1_g000010 Rmu_sc0011917.1_g000006 Rmu_sc0012293.1_g000004 Rmu_sc0012847.1_g000003 Rmu_sc0013773.1_g000001 Rmu_sc0016060.1_g000003 Rmu_sc0016170.1_g000013 Rmu_sc0016393.1_g000002 Rmu_sc0017589.1_g000001 Rmu_sc0017786.1_g000005 Rmu_sc0018326.1_g000002 Rmu_sc0020760.1_g000001 Rmu_sc0021262.1_g000003 Rmu_sc0023851.1_g000002 Rmu_sc0024044.1_g000001 Rmu_sc0026820.1_g000001 Rmu_sc0032306.1_g000001 Rmu_sc0035666.1_g000001 Rmu_sc0036881.1_g000001 Rmu_sc0037030.1_g000001 Rmu_sc0037158.1_g000001 Rmu_ssc0000016.1_g000002 Rmu_ssc0000044.1_g000012 Rmu_ssc0000044.1_g000014 Rmu_ssc0000050.1_g000064 Rmu_ssc0000064.1_g000022 Rmu_ssc0000154.1_g000037 Rmu_ssc0000178.1_g000013 Rmu_ssc0000217.1_g000022 Rmu_ssc0000392.1_g000004
rosa_roxburghii Rroxscaffold_3G00242000 Rroxscaffold_3G00242530 Rroxscaffold_6G00406010
rosa_rugosa Rorug01G0062000 Rorug02G0224000 Rorug02G0262900 Rorug02G0263000 Rorug02G0358900 Rorug02G0360500 Rorug02G0378500.1 Rorug02G0378600 Rorug02G0394700 Rorug03G0122900 Rorug03G0254600 Rorug03G0254700 Rorug03G0254800 Rorug04G0042200.1 Rorug04G0378100 Rorug05G0053400 Rorug05G0238600 Rorug05G0364500 Rorug05G0562000 Rorug06G0089300 Rorug06G0089400 Rorug06G0145700 Rorug07G0111600 Rorug07G0229500.1 Rorug07G0287600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 129
AccI GTMKAC 1 cut(s) 547
AciI CCGC 2 cut(s) 50, 377
AclWI GGATC 3 cut(s) 37, 105, 218
AcsI RAATTY 1 cut(s) 694
AfaI GTAC 3 cut(s) 24, 597, 729
AfiI CCNNNNNNNGG 3 cut(s) 293, 411, 529
AgeI ACCGGT 1 cut(s) 730
AgsI TTSAA 3 cut(s) 179, 420, 700
AhlI ACTAGT 1 cut(s) 353
AjnI CCWGG 3 cut(s) 336, 759, 848
AloI GAACNNNNNNTCC 6 cut(s) 318, 350, 741, 773, 791, 823
AluBI AGCT 6 cut(s) 152, 563, 664, 865, 877, 925
AluI AGCT 6 cut(s) 152, 563, 664, 865, 877, 925
Alw26I GTCTC 4 cut(s) 190, 287, 616, 775
AlwI GGATC 3 cut(s) 37, 105, 218
AoxI GGCC 1 cut(s) 296
ApeKI GCWGC 2 cut(s) 365, 736
ApoI RAATTY 1 cut(s) 694
AsiGI ACCGGT 1 cut(s) 730
AspLEI GCGC 1 cut(s) 535
AspS9I GGNCC 2 cut(s) 296, 334
AsuHPI GGTGA 3 cut(s) 184, 350, 775
AvaII GGWCC 1 cut(s) 334
BbvI GCAGC 2 cut(s) 352, 723
BccI CCATC 1 cut(s) 155
BceAI ACGGC 1 cut(s) 665
BciT130I CCWGG 3 cut(s) 338, 761, 850
BcoDI GTCTC 4 cut(s) 190, 287, 616, 775
BcuI ACTAGT 1 cut(s) 353
BfaI CTAG 5 cut(s) 149, 354, 423, 450, 719
BfmI CTRYAG 1 cut(s) 786
BfoI RGCGCY 1 cut(s) 536
BglII AGATCT 1 cut(s) 102
BisI GCNGC 3 cut(s) 366, 377, 737
BlsI GCNGC 3 cut(s) 367, 378, 738
Bme1390I CCNGG 3 cut(s) 338, 761, 850
Bme18I GGWCC 1 cut(s) 334
BmgT120I GGNCC 2 cut(s) 296, 334
BmiI GGNNCC 2 cut(s) 375, 904
BmrFI CCNGG 3 cut(s) 338, 761, 850
BmsI GCATC 5 cut(s) 73, 234, 531, 565, 615
BpmI CTGGAG 2 cut(s) 530, 743
Bpu10I CCTNAGC 1 cut(s) 292
BpuEI CTTGAG 1 cut(s) 391
BsaI GGTCTC 3 cut(s) 190, 287, 775
BsaJI CCNNGG 3 cut(s) 337, 551, 849
BsaWI WCCGGW 2 cut(s) 370, 730
BsaXI ACNNNNNCTCC 4 cut(s) 365, 395, 741, 771
Bsc4I CCNNNNNNNGG 3 cut(s) 293, 411, 529
Bse118I RCCGGY 1 cut(s) 730
Bse1I ACTGG 1 cut(s) 212
BseBI CCWGG 3 cut(s) 338, 761, 850
BseDI CCNNGG 3 cut(s) 337, 551, 849
BseGI GGATG 2 cut(s) 225, 640
BseLI CCNNNNNNNGG 3 cut(s) 293, 411, 529
BseMII CTCAG 5 cut(s) 306, 573, 617, 662, 735
BseNI ACTGG 1 cut(s) 212
BseRI GAGGAG 1 cut(s) 634
BseXI GCAGC 2 cut(s) 352, 723
BseYI CCCAGC 1 cut(s) 386
BsgI GTGCAG 1 cut(s) 351
BshFI GGCC 1 cut(s) 298
BshTI ACCGGT 1 cut(s) 730
BsiSI CCGG 2 cut(s) 371, 731
BslFI GGGAC 1 cut(s) 854
BslI CCNNNNNNNGG 3 cut(s) 293, 411, 529
BsmAI GTCTC 4 cut(s) 190, 287, 616, 775
BsmFI GGGAC 1 cut(s) 854
BsmI GAATGC 2 cut(s) 16, 439
BsnI GGCC 1 cut(s) 298
Bso31I GGTCTC 3 cut(s) 190, 287, 775
Bsp143I GATC 6 cut(s) 29, 97, 102, 210, 264, 896
BspACI CCGC 2 cut(s) 50, 377
BspANI GGCC 1 cut(s) 298
BspCNI CTCAG 5 cut(s) 305, 574, 618, 663, 736
BspLI GGNNCC 2 cut(s) 375, 904
BspPI GGATC 3 cut(s) 37, 105, 218
BspTNI GGTCTC 3 cut(s) 190, 287, 775
BsrFI RCCGGY 1 cut(s) 730
BsrI ACTGG 1 cut(s) 212
BssAI RCCGGY 1 cut(s) 730
BssECI CCNNGG 3 cut(s) 337, 551, 849
BssMI GATC 6 cut(s) 29, 97, 102, 210, 264, 896
Bst2UI CCWGG 3 cut(s) 338, 761, 850
Bst4CI ACNGT 2 cut(s) 334, 430
Bst6I CTCTTC 2 cut(s) 303, 761
BstDEI CTNAG 6 cut(s) 292, 564, 582, 626, 671, 744
BstF5I GGATG 2 cut(s) 225, 640
BstH2I RGCGCY 1 cut(s) 536
BstHHI GCGC 1 cut(s) 535
BstKTI GATC 6 cut(s) 32, 100, 105, 213, 267, 899
BstMAI GTCTC 4 cut(s) 190, 287, 616, 775
BstMBI GATC 6 cut(s) 29, 97, 102, 210, 264, 896
BstMWI GCNNNNNNNGC 3 cut(s) 143, 541, 900
BstNI CCWGG 3 cut(s) 338, 761, 850
BstSCI CCNGG 3 cut(s) 336, 759, 848
BstSFI CTRYAG 1 cut(s) 786
BstV1I GCAGC 2 cut(s) 352, 723
BstX2I RGATCY 1 cut(s) 102
BstYI RGATCY 1 cut(s) 102
BsuRI GGCC 1 cut(s) 298
BtsCI GGATG 2 cut(s) 225, 640
BtsIMutI CAGTG 1 cut(s) 435
CfoI GCGC 1 cut(s) 535
Cfr10I RCCGGY 1 cut(s) 730
Cfr13I GGNCC 2 cut(s) 296, 334
CseI GACGC 2 cut(s) 333, 533
Csp6I GTAC 3 cut(s) 23, 596, 728
CspAI ACCGGT 1 cut(s) 730
CspCI CAANNNNNGTGG 2 cut(s) 871, 906
CviAII CATG 2 cut(s) 15, 288
CviQI GTAC 3 cut(s) 23, 596, 728
DdeI CTNAG 6 cut(s) 292, 564, 582, 626, 671, 744
DpnI GATC 6 cut(s) 31, 99, 104, 212, 266, 898
DpnII GATC 6 cut(s) 29, 97, 102, 210, 264, 896
Eam1104I CTCTTC 2 cut(s) 303, 761
EarI CTCTTC 2 cut(s) 303, 761
Eco31I GGTCTC 3 cut(s) 190, 287, 775
Eco47I GGWCC 1 cut(s) 334
EcoO109I RGGNCCY 1 cut(s) 296
EcoRII CCWGG 3 cut(s) 336, 759, 848
EcoT22I ATGCAT 1 cut(s) 16
FaeI CATG 2 cut(s) 18, 291
FalI AAGNNNNNCTT 2 cut(s) 400, 432
FaqI GGGAC 1 cut(s) 854
FatI CATG 2 cut(s) 14, 287
FblI GTMKAC 1 cut(s) 547
Fnu4HI GCNGC 3 cut(s) 366, 377, 737
FokI GGATG 2 cut(s) 212, 647
Fsp4HI GCNGC 3 cut(s) 366, 377, 737
FspBI CTAG 5 cut(s) 149, 354, 423, 450, 719
GlaI GCGC 1 cut(s) 534
GluI GCNGC 3 cut(s) 366, 377, 737
GsaI CCCAGC 1 cut(s) 390
GsuI CTGGAG 2 cut(s) 530, 743
HaeII RGCGCY 1 cut(s) 536
HaeIII GGCC 1 cut(s) 298
HapII CCGG 2 cut(s) 371, 731
HgaI GACGC 2 cut(s) 333, 533
HhaI GCGC 1 cut(s) 535
Hin1II CATG 2 cut(s) 18, 291
Hin6I GCGC 1 cut(s) 533
HinP1I GCGC 1 cut(s) 533
HincII GTYRAC 1 cut(s) 548
HindII GTYRAC 1 cut(s) 548
HindIII AAGCTT 2 cut(s) 863, 875
HinfI GANTC 2 cut(s) 179, 707
HpaII CCGG 2 cut(s) 371, 731
HphI GGTGA 3 cut(s) 184, 350, 775
Hpy166II GTNNAC 2 cut(s) 25, 548
Hpy188I TCNGA 6 cut(s) 9, 82, 102, 247, 712, 912
Hpy188III TCNNGA 2 cut(s) 95, 106
Hpy8I GTNNAC 2 cut(s) 25, 548
Hpy99I CGWCG 1 cut(s) 549
HpyAV CCTTC 3 cut(s) 103, 199, 913
HpyCH4III ACNGT 2 cut(s) 334, 430
HpyCH4IV ACGT 1 cut(s) 474
HpyCH4V TGCA 5 cut(s) 14, 220, 368, 437, 739
HpyF10VI GCNNNNNNNGC 3 cut(s) 143, 541, 900
HpyF3I CTNAG 6 cut(s) 292, 564, 582, 626, 671, 744
HpySE526I ACGT 1 cut(s) 474
Hsp92II CATG 2 cut(s) 18, 291
HspAI GCGC 1 cut(s) 533
Kzo9I GATC 6 cut(s) 29, 97, 102, 210, 264, 896
LmnI GCTCC 5 cut(s) 373, 511, 712, 908, 922
Lsp1109I GCAGC 2 cut(s) 352, 723
LweI GCATC 5 cut(s) 73, 234, 531, 565, 615
MaeI CTAG 5 cut(s) 149, 354, 423, 450, 719
MaeII ACGT 1 cut(s) 474
MaeIII GTNAC 3 cut(s) 70, 345, 356
MalI GATC 6 cut(s) 31, 99, 104, 212, 266, 898
MboI GATC 6 cut(s) 29, 97, 102, 210, 264, 896
MboII GAAGA 3 cut(s) 320, 778, 835
MflI RGATCY 1 cut(s) 102
MluCI AATT 5 cut(s) 90, 141, 526, 694, 803
MmeI TCCRAC 1 cut(s) 664
Mph1103I ATGCAT 1 cut(s) 16
MspI CCGG 2 cut(s) 371, 731
MspR9I CCNGG 3 cut(s) 338, 761, 850
Mva1269I GAATGC 2 cut(s) 16, 439
MvaI CCWGG 3 cut(s) 338, 761, 850
MwoI GCNNNNNNNGC 3 cut(s) 143, 541, 900
NdeII GATC 6 cut(s) 29, 97, 102, 210, 264, 896
NlaIII CATG 2 cut(s) 18, 291
NlaIV GGNNCC 2 cut(s) 375, 904
NmeAIII GCCGAG 1 cut(s) 532
NmuCI GTSAC 3 cut(s) 70, 345, 356
NsiI ATGCAT 1 cut(s) 16
PctI GAATGC 2 cut(s) 16, 439
PfeI GAWTC 2 cut(s) 179, 707
PinAI ACCGGT 1 cut(s) 730
PkrI GCNGC 3 cut(s) 367, 378, 738
PsiI TTATAA 1 cut(s) 129
Psp6I CCWGG 3 cut(s) 336, 759, 848
PspFI CCCAGC 1 cut(s) 386
PspGI CCWGG 3 cut(s) 336, 759, 848
PspN4I GGNNCC 2 cut(s) 375, 904
PspPI GGNCC 2 cut(s) 296, 334
PsuI RGATCY 1 cut(s) 102
RsaI GTAC 3 cut(s) 24, 597, 729
RsaNI GTAC 3 cut(s) 23, 596, 728
SalI GTCGAC 1 cut(s) 546
SatI GCNGC 3 cut(s) 366, 377, 737
Sau3AI GATC 6 cut(s) 29, 97, 102, 210, 264, 896
Sau96I GGNCC 2 cut(s) 296, 334
ScrFI CCNGG 3 cut(s) 338, 761, 850
SfaNI GCATC 5 cut(s) 73, 234, 531, 565, 615
SfcI CTRYAG 1 cut(s) 786
SinI GGWCC 1 cut(s) 334
SmlI CTYRAG 1 cut(s) 406
SmoI CTYRAG 1 cut(s) 406
SpeI ACTAGT 1 cut(s) 353
Sse9I AATT 5 cut(s) 90, 141, 526, 694, 803
SsiI CCGC 2 cut(s) 50, 377
SspMI CTAG 5 cut(s) 149, 354, 423, 450, 719
StyD4I CCNGG 3 cut(s) 336, 759, 848
TaaI ACNGT 2 cut(s) 334, 430
TaiI ACGT 1 cut(s) 477
TaqI TCGA 1 cut(s) 547
TaqII GACCGA 1 cut(s) 172
TasI AATT 5 cut(s) 90, 141, 526, 694, 803
TauI GCSGC 1 cut(s) 379
TfiI GAWTC 2 cut(s) 179, 707
TscAI CASTG 1 cut(s) 435
TseFI GTSAC 3 cut(s) 70, 345, 356
TseI GCWGC 2 cut(s) 365, 736
Tsp45I GTSAC 3 cut(s) 70, 345, 356
TspGWI ACGGA 3 cut(s) 42, 230, 473
TspRI CASTG 1 cut(s) 435
VpaK11BI GGWCC 1 cut(s) 334
XapI RAATTY 1 cut(s) 694
XcmI CCANNNNNNNNNTGG 1 cut(s) 505
XmiI GTMKAC 1 cut(s) 547
XspI CTAG 5 cut(s) 149, 354, 423, 450, 719
Zsp2I ATGCAT 1 cut(s) 16
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.